-
1
-
-
73949118739
-
Molecular mechanisms of Escherichia coli pathogenicity
-
Croxen M.A., Finlay B.B. Molecular mechanisms of Escherichia coli pathogenicity. Nat. Rev. Microbiol. 2010, 8:26-38.
-
(2010)
Nat. Rev. Microbiol.
, vol.8
, pp. 26-38
-
-
Croxen, M.A.1
Finlay, B.B.2
-
2
-
-
33745282930
-
Sex and virulence in Escherichia coli: an evolutionary perspective
-
Wirth T., Falush D., Lan R., Colles F., Mensa P., Wieler L.H., Karch H., Reeves P.R., Maiden M.C., Ochman H., Achtman M. Sex and virulence in Escherichia coli: an evolutionary perspective. Mol. Microbiol. 2006, 60:1136-1151.
-
(2006)
Mol. Microbiol.
, vol.60
, pp. 1136-1151
-
-
Wirth, T.1
Falush, D.2
Lan, R.3
Colles, F.4
Mensa, P.5
Wieler, L.H.6
Karch, H.7
Reeves, P.R.8
Maiden, M.C.9
Ochman, H.10
Achtman, M.11
-
3
-
-
60549112381
-
Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains
-
Jaureguy F., Landraud L., Passet V., Diancourt L., Frapy E., Guigon G., Carbonnelle E., Lortholary O., Clermont O., Denamur E., Picard B., Nassif X., Brisse S. Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains. BMC Genomics 2008, 9:560.
-
(2008)
BMC Genomics
, vol.9
, pp. 560
-
-
Jaureguy, F.1
Landraud, L.2
Passet, V.3
Diancourt, L.4
Frapy, E.5
Guigon, G.6
Carbonnelle, E.7
Lortholary, O.8
Clermont, O.9
Denamur, E.10
Picard, B.11
Nassif, X.12
Brisse, S.13
-
4
-
-
84873324306
-
The Clermont Escherichia coli phylo-typing method revisited: improvement of specificity and detection of new phylo-groups
-
Clermont O., Christenson J.K., Denamur E., Gordon D.M. The Clermont Escherichia coli phylo-typing method revisited: improvement of specificity and detection of new phylo-groups. Environ. Microbiol. Rep. 2013, 5:58-65.
-
(2013)
Environ. Microbiol. Rep.
, vol.5
, pp. 58-65
-
-
Clermont, O.1
Christenson, J.K.2
Denamur, E.3
Gordon, D.M.4
-
5
-
-
59249104866
-
Order and disorder during Escherichia coli divergence
-
Hendrickson H. Order and disorder during Escherichia coli divergence. PLoS Genet. 2009, 5:e1000335.
-
(2009)
PLoS Genet.
, vol.5
, pp. e1000335
-
-
Hendrickson, H.1
-
7
-
-
76949094947
-
The population genetics of commensal Escherichia coli
-
Tenaillon O., Skurnik D., Picard B., Denamur E. The population genetics of commensal Escherichia coli. Nat. Rev. Microbiol. 2010, 8:207-217.
-
(2010)
Nat. Rev. Microbiol.
, vol.8
, pp. 207-217
-
-
Tenaillon, O.1
Skurnik, D.2
Picard, B.3
Denamur, E.4
-
8
-
-
0035170978
-
Phylogenetic distribution of extraintestinal virulence-associated traits in Escherichia coli
-
Johnson J.R., Delavari P., Kuskowski M., Stell A.L. Phylogenetic distribution of extraintestinal virulence-associated traits in Escherichia coli. J. Infect. Dis. 2001, 183:78-88.
-
(2001)
J. Infect. Dis.
, vol.183
, pp. 78-88
-
-
Johnson, J.R.1
Delavari, P.2
Kuskowski, M.3
Stell, A.L.4
-
9
-
-
0031885976
-
Chromosomal regions specific to pathogenic isolates of Escherichia coli have a phylogenetically clustered distribution
-
Boyd E.F., Hartl D.L. Chromosomal regions specific to pathogenic isolates of Escherichia coli have a phylogenetically clustered distribution. J. Bacteriol. 1998, 180:1159-1165.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 1159-1165
-
-
Boyd, E.F.1
Hartl, D.L.2
-
10
-
-
0037093824
-
Epidemiological correlates of virulence genotype and phylogenetic background among Escherichia coli blood isolates from adults with diverse-source bacteremia
-
Johnson J.R., Kuskowski M.A., O'Bryan T.T., Maslow J.N. Epidemiological correlates of virulence genotype and phylogenetic background among Escherichia coli blood isolates from adults with diverse-source bacteremia. J. Infect. Dis. 2002, 185:1439-1447.
-
(2002)
J. Infect. Dis.
, vol.185
, pp. 1439-1447
-
-
Johnson, J.R.1
Kuskowski, M.A.2
O'Bryan, T.T.3
Maslow, J.N.4
-
11
-
-
0035873128
-
Clonal relationships and extended virulence genotypes among Escherichia coli isolates from women with a first or recurrent episode of cystitis
-
Johnson J.R., O'Bryan T.T., Delavari P., Kuskowski M., Stapleton A., Carlino U., Russo T.A. Clonal relationships and extended virulence genotypes among Escherichia coli isolates from women with a first or recurrent episode of cystitis. J. Infect. Dis. 2001, 183:1508-1517.
-
(2001)
J. Infect. Dis.
, vol.183
, pp. 1508-1517
-
-
Johnson, J.R.1
O'Bryan, T.T.2
Delavari, P.3
Kuskowski, M.4
Stapleton, A.5
Carlino, U.6
Russo, T.A.7
-
12
-
-
0031741481
-
Escherichia coli molecular phylogeny using the incongruence length difference test
-
Lecointre G., Rachdi L., Darlu P., Denamur E. Escherichia coli molecular phylogeny using the incongruence length difference test. Mol. Biol. Evol. 1998, 15:1685-1695.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 1685-1695
-
-
Lecointre, G.1
Rachdi, L.2
Darlu, P.3
Denamur, E.4
-
13
-
-
0033775633
-
Rapid and simple determination of the Escherichia coli phylogenetic group
-
Clermont O., Bonacorsi S., Bingen E. Rapid and simple determination of the Escherichia coli phylogenetic group. Appl. Environ. Microbiol. 2000, 66:4555-4558.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 4555-4558
-
-
Clermont, O.1
Bonacorsi, S.2
Bingen, E.3
-
14
-
-
84865176545
-
Improved multiplex PCR strategy for rapid assignment of the four major Escherichia coli phylogenetic groups
-
Doumith M., Day M.J., Hope R., Wain J., Woodford N. Improved multiplex PCR strategy for rapid assignment of the four major Escherichia coli phylogenetic groups. J. Clin. Microbiol. 2012, 50:3108-3110.
-
(2012)
J. Clin. Microbiol.
, vol.50
, pp. 3108-3110
-
-
Doumith, M.1
Day, M.J.2
Hope, R.3
Wain, J.4
Woodford, N.5
-
15
-
-
77958539494
-
Matrix-assisted laser desorption ionization time-of-flight mass spectrometry, a revolution in clinical microbial identification
-
Bizzini A., Greub G. Matrix-assisted laser desorption ionization time-of-flight mass spectrometry, a revolution in clinical microbial identification. Clin. Microbiol. Infect. 2010, 16:1614-1619.
-
(2010)
Clin. Microbiol. Infect.
, vol.16
, pp. 1614-1619
-
-
Bizzini, A.1
Greub, G.2
-
16
-
-
0035385154
-
Characterization of intact microorganisms by MALDI mass spectrometry
-
Fenselau C., Demirev P.A. Characterization of intact microorganisms by MALDI mass spectrometry. Mass. Spectrom. Rev. 2001, 20:157-171.
-
(2001)
Mass. Spectrom. Rev.
, vol.20
, pp. 157-171
-
-
Fenselau, C.1
Demirev, P.A.2
-
17
-
-
50949123272
-
Rapid identification and typing of Listeria species by matrix-assisted laser desorption ionization-time of flight mass spectrometry
-
Barbuddhe S.B., Maier T., Schwarz G., Kostrzewa M., Hof H., Domann E., Chakraborty T., Hain T. Rapid identification and typing of Listeria species by matrix-assisted laser desorption ionization-time of flight mass spectrometry. Appl. Environ. Microbiol. 2008, 74:5402-5407.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 5402-5407
-
-
Barbuddhe, S.B.1
Maier, T.2
Schwarz, G.3
Kostrzewa, M.4
Hof, H.5
Domann, E.6
Chakraborty, T.7
Hain, T.8
-
18
-
-
80053560148
-
Rapid species specific identification and subtyping of Yersinia enterocolitica by MALDI-TOF mass spectrometry
-
Stephan R., Cernela N., Ziegler D., Pfluger V., Tonolla M., Ravasi D., Fredriksson-Ahomaa M., Hachler H. Rapid species specific identification and subtyping of Yersinia enterocolitica by MALDI-TOF mass spectrometry. J. Microbiol. Methods 2011, 87:150-153.
-
(2011)
J. Microbiol. Methods
, vol.87
, pp. 150-153
-
-
Stephan, R.1
Cernela, N.2
Ziegler, D.3
Pfluger, V.4
Tonolla, M.5
Ravasi, D.6
Fredriksson-Ahomaa, M.7
Hachler, H.8
-
19
-
-
57449093355
-
Rapid classification and identification of salmonellae at the species and subspecies levels by whole-cell matrix-assisted laser desorption ionization-time of flight mass spectrometry
-
Dieckmann R., Helmuth R., Erhard M., Malorny B. Rapid classification and identification of salmonellae at the species and subspecies levels by whole-cell matrix-assisted laser desorption ionization-time of flight mass spectrometry. Appl. Environ. Microbiol. 2008, 74:7767-7778.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 7767-7778
-
-
Dieckmann, R.1
Helmuth, R.2
Erhard, M.3
Malorny, B.4
-
20
-
-
84868698886
-
Identification and cluster analysis of Streptococcus pyogenes by MALDI-TOF mass spectrometry
-
Wang J., Zhou N., Xu B., Hao H., Kang L., Zheng Y., Jiang Y., Jiang H. Identification and cluster analysis of Streptococcus pyogenes by MALDI-TOF mass spectrometry. PLoS One 2012, 7:e47152.
-
(2012)
PLoS One
, vol.7
, pp. e47152
-
-
Wang, J.1
Zhou, N.2
Xu, B.3
Hao, H.4
Kang, L.5
Zheng, Y.6
Jiang, Y.7
Jiang, H.8
-
21
-
-
78649634917
-
MALDI-TOF MS fingerprinting allows for discrimination of major methicillin-resistant Staphylococcus aureus lineages
-
Wolters M., Rohde H., Maier T., Belmar-Campos C., Franke G., Scherpe S., Aepfelbacher M., Christner M. MALDI-TOF MS fingerprinting allows for discrimination of major methicillin-resistant Staphylococcus aureus lineages. Int. J. Med. Microbiol. 2011, 301:64-68.
-
(2011)
Int. J. Med. Microbiol.
, vol.301
, pp. 64-68
-
-
Wolters, M.1
Rohde, H.2
Maier, T.3
Belmar-Campos, C.4
Franke, G.5
Scherpe, S.6
Aepfelbacher, M.7
Christner, M.8
-
22
-
-
84859842102
-
Characterization of a Staphylococcus aureus USA300 protein signature using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
-
Boggs S.R., Cazares L.H., Drake R. Characterization of a Staphylococcus aureus USA300 protein signature using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. J. Med. Microbiol. 2012, 61:640-644.
-
(2012)
J. Med. Microbiol.
, vol.61
, pp. 640-644
-
-
Boggs, S.R.1
Cazares, L.H.2
Drake, R.3
-
23
-
-
84880372916
-
Evaluation of MALDI-TOF mass spectroscopy methods for determination of Escherichia coli pathotypes
-
Clark C.G., Kruczkiewicz P., Guan C., McCorrister S.J., Chong P., Wylie J., van Caeseele P., Tabor H.A., Snarr P., Gilmour M.W., Taboada E.N., Westmacott G.R. Evaluation of MALDI-TOF mass spectroscopy methods for determination of Escherichia coli pathotypes. J. Microbiol. Methods 2013, 94:180-191.
-
(2013)
J. Microbiol. Methods
, vol.94
, pp. 180-191
-
-
Clark, C.G.1
Kruczkiewicz, P.2
Guan, C.3
McCorrister, S.J.4
Chong, P.5
Wylie, J.6
van Caeseele, P.7
Tabor, H.A.8
Snarr, P.9
Gilmour, M.W.10
Taboada, E.N.11
Westmacott, G.R.12
-
25
-
-
84873580588
-
10-Fold increase (2006-11) in the rate of healthy subjects with extended-spectrum b-lactamase-producing Escherichia coli faecal carriage in a Parisian check-up centre
-
Nicolas-Chanoine M.H., Gruson C., Bialek-Davenet S., Bertrand X., Thomas-Jean F., Bert F., Moyat M., Meiller E., Marcon E., Danchin N., Noussair L., Moreau R., Leflon-Guibout V. 10-Fold increase (2006-11) in the rate of healthy subjects with extended-spectrum b-lactamase-producing Escherichia coli faecal carriage in a Parisian check-up centre. J. Antimicrob. Chemother. 2013, 68:562-568.
-
(2013)
J. Antimicrob. Chemother.
, vol.68
, pp. 562-568
-
-
Nicolas-Chanoine, M.H.1
Gruson, C.2
Bialek-Davenet, S.3
Bertrand, X.4
Thomas-Jean, F.5
Bert, F.6
Moyat, M.7
Meiller, E.8
Marcon, E.9
Danchin, N.10
Noussair, L.11
Moreau, R.12
Leflon-Guibout, V.13
-
26
-
-
84901797148
-
Wastewater treatment plants release large amounts of extended-spectrum-β-lactamase-producing Escherichia coli into the environment
-
Bréchet C., Plantin J., Sauget M., Thouverez M., Talon D., Cholley P., Guyeux C., Hocquet D., Bertrand X. Wastewater treatment plants release large amounts of extended-spectrum-β-lactamase-producing Escherichia coli into the environment. Clin. Infect. Dis. 2014, 58:1658-1665.
-
(2014)
Clin. Infect. Dis.
, vol.58
, pp. 1658-1665
-
-
Bréchet, C.1
Plantin, J.2
Sauget, M.3
Thouverez, M.4
Talon, D.5
Cholley, P.6
Guyeux, C.7
Hocquet, D.8
Bertrand, X.9
-
27
-
-
0032808268
-
Identification of bacterial proteins observed in MALDI TOF mass spectra from whole cells
-
Holland R.D., Duffy C.R., Rafii F., Sutherland J.B., Heinze T.M., Holder C.L., Voorhees K.J., Lay J.O. Identification of bacterial proteins observed in MALDI TOF mass spectra from whole cells. Anal. Chem. 1999, 71:3226-3230.
-
(1999)
Anal. Chem.
, vol.71
, pp. 3226-3230
-
-
Holland, R.D.1
Duffy, C.R.2
Rafii, F.3
Sutherland, J.B.4
Heinze, T.M.5
Holder, C.L.6
Voorhees, K.J.7
Lay, J.O.8
-
28
-
-
84897129425
-
Detection of extended-spectrum-b-lactamase-producing Escherichia coli ST131 and ST405 clonal groups by matrix-assisted laser desorption ionization-time of flight mass spectrometry
-
Matsumura Y., Yamamoto M., Nagao M., Tanaka M., Machida K., Ito Y., Takakura S., Ichiyama S. Detection of extended-spectrum-b-lactamase-producing Escherichia coli ST131 and ST405 clonal groups by matrix-assisted laser desorption ionization-time of flight mass spectrometry. J. Clin. Microbiol. 2014, 52:1034-1040.
-
(2014)
J. Clin. Microbiol.
, vol.52
, pp. 1034-1040
-
-
Matsumura, Y.1
Yamamoto, M.2
Nagao, M.3
Tanaka, M.4
Machida, K.5
Ito, Y.6
Takakura, S.7
Ichiyama, S.8
-
29
-
-
77950436748
-
Rapid identification of protein biomarkers of Escherichia coli O157:H7 by matrix-assisted laser desorption ionization-time-of-flight-time-of-flight mass spectrometry and top-down proteomics
-
Fagerquist C.K., Garbus B.R., Miller W.G., Williams K.E., Yee E., Bates A.H., Boyle S., Harden L.A., Cooley M.B., Mandrell R.E. Rapid identification of protein biomarkers of Escherichia coli O157:H7 by matrix-assisted laser desorption ionization-time-of-flight-time-of-flight mass spectrometry and top-down proteomics. Anal. Chem. 2010, 82:2717-2725.
-
(2010)
Anal. Chem.
, vol.82
, pp. 2717-2725
-
-
Fagerquist, C.K.1
Garbus, B.R.2
Miller, W.G.3
Williams, K.E.4
Yee, E.5
Bates, A.H.6
Boyle, S.7
Harden, L.A.8
Cooley, M.B.9
Mandrell, R.E.10
-
30
-
-
33644688970
-
Roadmap for developing and validating therapeutically relevant genomic classifiers
-
Simon R. Roadmap for developing and validating therapeutically relevant genomic classifiers. J. Clin. Oncol. 2005, 23:7332-7341.
-
(2005)
J. Clin. Oncol.
, vol.23
, pp. 7332-7341
-
-
Simon, R.1
-
31
-
-
84903817716
-
MALDI-TOF mass spectrometry as a tool for the discrimination of high-risk Escherichia coli clones from phylogenetic groups B2 (ST131) and D (ST69, ST405, ST393)
-
in press
-
Novais A., Sousa C., de Dios Caballero J., Fernandez-Olmos A., Lopes J., Ramos H., Coque T.M., Canton R., Peixe L. MALDI-TOF mass spectrometry as a tool for the discrimination of high-risk Escherichia coli clones from phylogenetic groups B2 (ST131) and D (ST69, ST405, ST393). Eur. J. Clin. Microbiol. Infect. Dis. 2014, in press.
-
(2014)
Eur. J. Clin. Microbiol. Infect. Dis.
-
-
Novais, A.1
Sousa, C.2
de Dios Caballero, J.3
Fernandez-Olmos, A.4
Lopes, J.5
Ramos, H.6
Coque, T.M.7
Canton, R.8
Peixe, L.9
|