MALDI-TOF mass spectrometry as a tool for the discrimination of high-risk Escherichia coli clones from phylogenetic groups B2 (ST131) and D (ST69, ST405, ST393)

European Journal of Clinical Microbiology and Infectious Diseases

Volumn 33, Issue 8, 2014, Pages 1391-1399

  Novais, A ^a   Sousa, C ^a   De Dios Caballero, J ^b,d   Fernandez Olmos, A ^b   Lopes, J ^a   Ramos, H ^c   Coque, T M ^b,d   Canton R ^b,d   Peixe, L ^a  

^a UNIVERSITY OF PORTO   (Portugal)

^b HOSPITAL RAMÓN Y CAJAL   (Spain)

^c Centro Hospitalar Universitario do Porto   (Portugal)

^d INSTITUTO DE SALUD CARLOS III   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIUM ISOLATE; CLONE; CONTROLLED STUDY; ESCHERICHIA COLI; EXTRACTION; GENOTYPE; INFECTION CONTROL; MASS SPECTROMETER; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MEASUREMENT REPEATABILITY; MULTILOCUS SEQUENCE TYPING; NONHUMAN; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS; REPRODUCIBILITY; STANDARD; ANIMAL; BACTERIUM IDENTIFICATION; CLUSTER ANALYSIS; DIFFERENTIAL DIAGNOSIS; EARLY DIAGNOSIS; ESCHERICHIA COLI INFECTIONS; GENETICS; HUMAN; ISOLATION AND PURIFICATION; MASS SPECTROMETRY; MICROBIOLOGY; RISK; SHIGA TOXIN PRODUCING ESCHERICHIA COLI;

ANIMALS; BACTERIAL TYPING TECHNIQUES; CLUSTER ANALYSIS; DIAGNOSIS, DIFFERENTIAL; EARLY DIAGNOSIS; ESCHERICHIA COLI INFECTIONS; HUMANS; MULTILOCUS SEQUENCE TYPING; PHYLOGENY; RISK; SHIGA-TOXIGENIC ESCHERICHIA COLI; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 84903817716     PISSN: 09349723     EISSN: 14354373     Source Type: Journal    
DOI: 10.1007/s10096-014-2071-5     Document Type: Article

References (44)

1. Baquero F, Coque TM (2011) Multilevel population genetics in antibiotic resistance. FEMS Microbiol Rev 35(5):705-706
2. Woodford N, Turton JF, Livermore DM (2011) Multiresistant Gram-negative bacteria: the role of high-risk clones in the dissemination of antibiotic resistance. FEMS Microbiol Rev 35(5):736-755
3. Johnson JR, Johnston B, Clabots C, Kuskowski MA, Castanheira M (2010) Escherichia coli sequence type ST131 as the major cause of serious multidrug-resistant E. coli infections in the United States. Clin Infect Dis 51(3):286-294
4. Johnson JR, Tchesnokova V, Johnston B, Clabots C, Roberts PL, Billig M, Riddell K, Rogers P, Qin X, Butler-Wu S, Price LB, Aziz M, Nicolas-Chanoine MH, Debroy C, Robicsek A, Hansen G, Urban C, Platell J, Trott DJ, Zhanel G, Weissman SJ, Cookson BT, Fang FC, Limaye AP, Scholes D, Chattopadhyay S, Hooper DC, Sokurenko EV (2013) Abrupt emergence of a single dominant multidrug-resistant strain of Escherichia coli. J Infect Dis 207(6):919-928
5. Centers for Disease Control and Prevention (CDC) (2013) Antibiotic resistance threats in the United States, 2013. Available online at: http://www.cdc.gov/drugresistance/threat-report-2013/. Last accessed 13 December 2013
6. Novais A, Pires J, Ferreira H, Costa L, Montenegro C, Vuotto C, Donelli G, Coque TM, Peixe L (2012) Characterization of globally spread Escherichia coli ST131 isolates (1991 to 2010). Antimicrob Agents Chemother 56(7):3973-3976
7. Novais Â, Vuotto C, Pires J, Montenegro C, Donelli G, Coque TM, Peixe L (2013) Diversity and biofilm-production ability among isolates of Escherichia coli phylogroup D belonging to ST69, ST393 and ST405 clonal groups. BMC Microbiol 13:144
8. Blanco J, Mora A, Mamani R, López C, Blanco M, Dahbi G, Herrera A, Blanco JE, Alonso MP, García-Garrote F, Chaves F, Orellana MÁ, Martínez-Martínez L, Calvo J, Prats G, Larrosa MN, González-López JJ, López-Cerero L, Rodríguez- Baño J, Pascual A (2011) National survey of Escherichia coli causing extraintestinal infections reveals the spread of drug-resistant clonal groups O25b:H4-B2-ST131, O15:H1-D-ST393 and CGA-D-ST69 with high virulence gene content in Spain. J Antimicrob Chemother 66(9):2011-2021
9. Blanco J, Mora A, Mamani R, López C, Blanco M, Dahbi G, Herrera A, Marzoa J, Fernández V, de la Cruz F, Martínez-Martínez L, Alonso MP, Nicolas-Chanoine MH, Johnson JR, Johnston B, López-Cerero L, Pascual A, Rodríguez-Baño J; Spanish Group for Nosocomial Infections (GEIH) (2013) Four main virotypes among extended-spectrum-beta- lactamase-producing isolates of Escherichia coli O25b:H4-B2-ST131: bacterial, epidemiological, and clinical characteristics. J Clin Microbiol 51(10):3358-3367
10. Dahbi G, Mora A, López C, Alonso MP, Mamani R, Marzoa J, Coira A, García-Garrote F, Pita JM, Velasco D, Herrera A, Viso S, Blanco JE, Blanco M, Blanco J (2013) Emergence of new variants of ST131 clonal group among extraintestinal pathogenic Escherichia coli producing extended-spectrum beta-lactamases. Int J Antimicrob Agents 42(4):347-351
11. Clark AE, Kaleta EJ, Arora A, Wolk DM (2013) Matrix-assisted laser desorption ionization-time of flight mass spectrometry: a fundamental shift in the routine practice of clinical microbiology. Clin Microbiol Rev 26(3):547-603
12. Fenselau C, Demirev PA (2001) Characterization of intact microorganisms by MALDI mass spectrometry. Mass Spectrom Rev 20(4):157-171 (Pubitemid 34151741)
13. Lartigue MF (2013) Matrix-assisted laser desorption ionization time-of-flight mass spectrometry for bacterial strain characterization. Infect Genet Evol 13:230-235
14. Clark CG, Kruczkiewicz P, Guan C, McCorrister SJ, Chong P, Wylie J, van Caeseele P, Tabor HA, Snarr P, Gilmour MW, Taboada EN, Westmacott GR (2013) Evaluation of MALDI-TOF mass spectroscopy methods for determination of Escherichia coli pathotypes. J Microbiol Methods 94(3):180-191
15. Hrabák J, Chudácková E, Walková R (2013) Matrix-assisted laser desorption ionization-time of flight (maldi-tof) mass spectrometry for detection of antibiotic resistance mechanisms: from research to routine diagnosis. Clin Microbiol Rev 26(1):103-114
16. Momo RA, Povey JF, Smales CM, O'Malley CJ, Montague GA, Martin EB (2013) MALDI-ToF mass spectrometry coupled with multivariate pattern recognition analysis for the rapid biomarker profiling of Escherichia coli in different growth phases. Anal Bioanal Chem 405(25):8251-8265
17. Kuehl B, Marten SM, Bischoff Y, Brenner-Weiss G, Obst U (2011) MALDI-ToF mass spectrometry-multivariate data analysis as a tool for classification of reactivation and non-culturable states of bacteria. Anal Bioanal Chem 401(5):1593-1600
18. Dieckmann R, Malorny B (2011) Rapid screening of epidemiologically important Salmonella enterica subsp. enterica serovars by whole-cell matrix-assisted laser desorption ionization-time of flight mass spectrometry. Appl Environ Microbiol 77(12):4136-4146
19. Barbuddhe SB, Maier T, Schwarz G, Kostrzewa M, Hof H, Domann E, Chakraborty T, Hain T (2008) Rapid identification and typing of Listeria species by matrix-assisted laser desorption ionization-time of flight mass spectrometry. Appl Environ Microbiol 74(17):5402-5407
20. Wolters M, Rohde H, Maier T, Belmar-Campos C, Franke G, Scherpe S, Aepfelbacher M, Christner M (2011) MALDI-TOF MS fingerprinting allows for discrimination of major methicillin-resistant Staphylococcus aureus lineages. Int J Med Microbiol 301(1):64-68
21. Böhme K, Fernández-No IC, Pazos M, Gallardo JM, Barros-Velázquez J, Cañas B, Calo-Mata P (2013) Identification and classification of seafood-borne pathogenic and spoilage bacteria: 16S rRNA sequencing versus MALDI-TOF MS fingerprinting. Electrophoresis 34(6):877-887
22. Bernaschi P, Del Chierico F, Petrucca A, Argentieri A, Ciofi Degli Atti M, Ciliento G, Carletti M, Muraca M, Locatelli F, Putignani L (2013) Microbial tracking of multidrug-resistant Klebsiella pneumoniae isolates in a pediatric hospital setting. Int J Immunopathol Pharmacol 26(2):463-472
23. Berrazeg M, Diene SM, Drissi M, Kempf M, Richet H, Landraud L, Rolain JM (2013) Biotyping of multidrug-resistant Klebsiella pneumoniae clinical isolates from France and Algeria using MALDI-TOF MS. PLoS One 8(4):e61428
24. Welker M (2011) Proteomics for routine identification of microorganisms. Proteomics 11(15):3143-3153
25. Croxatto A, Prod'hom G, Greub G (2012) Applications of MALDI-TOF mass spectrometry in clinical diagnostic microbiology. FEMS Microbiol Rev 36(2):380-407
26. Vlek AL, Bonten MJ, Boel CH (2012) Direct matrix-assisted laser desorption ionization time-of-flight mass spectrometry improves appropriateness of antibiotic treatment of bacteremia. PLoS One 7(3):e32589
27. Del Chierico F, Petrucca A, Vernocchi P, Bracaglia G, Fiscarelli E, Bernaschi P, Muraca M, Urbani A, Putignani L (2014) Proteomics boosts translational and clinical microbiology. J Proteomics 97:69-87
28. Clerc O, Prod'hom G, Vogne C, Bizzini A, Calandra T, Greub G (2013) Impact of matrix-assisted laser desorption ionization time-of-flight mass spectrometry on the clinical management of patients with Gram-negative bacteremia: a prospective observational study. Clin Infect Dis 56(8):1101-1107
29. Naes T, Isaksson T, Fearn T, Davis T (2002) A user-friendly guide to multivariate calibration and classification. NIR Publications, Chichester
30. Geladi P, Kowalsky BR (1986) Partial least-squares regression: a tutorial. Anal Chim Acta 185:1-17
31. Alsberg BK, Kell DB, Goodacre R (1998) Variable selection in discriminant partial least-squares analysis. Anal Chem 70:4126-4133 (Pubitemid 128484757)
32. De Maesschalck R, Candolfi A, Massart DL, Heuerding S (1999) Decision criteria for soft independent modeling of class analogy applied to near infrared data. Chemom Intell Lab Syst 47:65-77 (Pubitemid 29100100)
33. Wold S (1976) Pattern recognition by means of disjoint principal components models. Pattern Recog 8:127-139
34. Hunter PR (1990) Reproducibility and indices of discriminatory power of microbial typing methods. J Clin Microbiol 28(9):1903-1905
35. Josten M, Reif M, Szekat C, Al-Sabti N, Roemer T, Sparbier K, Kostrzewa M, Rohde H, Sahl HG, Bierbaum G (2013) Analysis of the matrix-assisted laser desorption ionization-time of flight mass spectrum of Staphylococcus aureus identifies mutations that allow differentiation of the main clonal lineages. J Clin Microbiol 51(6):1809-1817
36. Sandrin TR, Goldstein JE, Schumaker S (2013) MALDI TOF MS profiling of bacteria at the strain level: a review. Mass Spectrom Rev 32(3):188-217
37. Lasch P, Drevinek M, Nattermann H, Grunow R, Stämmler M, Dieckmann R, Schwecke T, Naumann D (2010) Characterization of Yersinia using MALDI-TOF mass spectrometry and chemometrics. Anal Chem 82(20):8464-8475
38. Dworzanski JP, Deshpande SV, Chen R, Jabbour RE, Snyder AP, Wick CH, Li L (2006) Mass spectrometry-based proteomics combined with bioinformatic tools for bacterial classification. J Proteome Res 5(1):76-87 (Pubitemid 43102724)
39. Williams TL, Andrzejewski D, Lay JO, Musser SM (2003) Experimental factors affecting the quality and reproducibility of MALDI TOF mass spectra obtained from whole bacteria cells. J Am Soc Mass Spectrom 14(4):342-351 (Pubitemid 36876035)
40. Dieckmann R, Helmuth R, Erhard M, Malorny B (2008) Rapid classification and identification of salmonellae at the species and subspecies levels by whole-cell matrix-assisted laser desorption ionization-time of flight mass spectrometry. Appl Environ Microbiol 74(24):7767-7778
41. Mellmann A, Bimet F, Bizet C, Borovskaya AD, Drake RR, Eigner U, Fahr AM, He Y, Ilina EN, Kostrzewa M, Maier T, Mancinelli L, Moussaoui W, Prévost G, Putignani L, Seachord CL, Tang YW, Harmsen D (2009) High interlaboratory reproducibility of matrix-assisted laser desorption ionization-time of flight mass spectrometry-based species identification of nonfermenting bacteria. J Clin Microbiol 47(11):3732-3734
42. Wunschel SC, Jarman KH, Petersen CE, Valentine NB, Wahl KL, Schauki D, Jackman J, Nelson CP, White E 5th (2005) Bacterial analysis by MALDI-TOF mass spectrometry: an inter-laboratory comparison. J Am Soc Mass Spectrom 16(4):456-462 (Pubitemid 40410031)
43. Suarez S, Ferroni A, Lotz A, Jolley KA, Guérin P, Leto J, Dauphin B, Jamet A, Maiden MC, Nassif X, Armengaud J (2013) Ribosomal proteins as biomarkers for bacterial identification by mass spectrometry in the clinical microbiology laboratory. J Microbiol Methods 94(3):390-396
44. CTX-M-1/-32in diverse Escherichia coli clones from different piggeries. J Antimicrob Chemother 68(10):2245-2248