An ultrasensitive electrochemical miRNAs sensor based on miRNAs-initiated cleavage of DNA by duplex-specific nuclease and signal amplification of enzyme plus redox cycling reaction

Sensors and Actuators, B: Chemical

Volumn 208, Issue , 2015, Pages 137-142

  Liu, Lin ^a   Gao, Yanping ^a   Liu, Huiping ^a   Xia, Ning ^a  

^a ANYANG NORMAL UNIVERSITY   (China)

Author keywords

Alkaline phosphatase; Duplex specific nuclease; Electrochemical sensor; miRNAs; Redox cycling

Indexed keywords

DNA; ELECTROCHEMICAL SENSORS; ELECTRODES; PHOSPHATASES; PHOSPHORUS COMPOUNDS; PROTEINS; SIGNAL DETECTION; SIGNAL PROCESSING; SUBSTRATES;

ALKALINE PHOSPHATASE; DUPLEX-SPECIFIC NUCLEASE; ELECTROCHEMICAL SENSING; MIRNAS; P-AMINOPHENYL PHOSPHATE; REDOX CYCLING; SIGNAL AMPLIFICATIONS; SINGLE-STRANDED DNA;

RNA;

EID: 84911917308     PISSN: 09254005     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.snb.2014.11.023     Document Type: Article

References (46)

1. D.P. Bartel MicroRNAs: genomics, biogenesis, mechanism, and function Cell 116 2004 281
2. R.C. Friedman, K.K. Farh, C.B. Burge, and D.P. Bartel Most mammalian mRNAs are conserved targets of microRNAs Genome Res. 19 2009 92
3. Y.W. Kong, D. Ferland-McCollough, T.J. Jackson, and M. Bushell microRNAs in cancer management Lancet Oncol. 13 2012 e249
4. M. de Planell-Saguer, and M.C. Rodicio Analytical aspects of microRNA in diagnostics: a review Anal. Chim. Acta 699 2011 134
5. H. Dong, J. Lei, L. Ding, Y. Wen, H. Ju, and X. Zhang MicroRNA: function, detection, and bioanalysis Chem. Rev. 113 2013 6207
6. A.J. Qavi, J.T. Kindt, and R.C. Bailey Sizing up the future of microRNA analysis Anal. Bioanal. Chem. 398 2010 2535
7. S.D. Fiedler, M.Z. Carletti, and L.K. Christenson Quantitative RT-PCR methods for mature microRNA expression analysis Methods Mol. Biol. 630 2010 49
8. W. Li, and K. Ruan MicroRNA detection by microarray Anal. Bioanal. Chem. 394 2009 1117
9. A. Válóczi, C. Hornyik, N. Varga, J. Burgyán, S. Kauppinen, and Z. Havelda Sensitive and specific detection of microRNAs by northern blot analysis using LNA-modified oligonucleotide probes Nucleic Acids Res. 32 2004 e175
10. J.D. Driskell, A.G. Seto, L.P. Jones, S. Jokela, R.A. Dluhy, Y.P. Zhao, and R.A. Tripp Rapid microRNA (miRNA) detection and classification via surface-enhanced Raman spectroscopy (SERS) Biosens. Bioelectron. 24 2008 917
11. D.C. Zhang, Y.R. Yan, W. Cheng, W. Zhang, Y.H. Li, H.X. Ju, and S.J. Ding Streptavidin-enhanced surface plasmon resonance biosensor for highly sensitive and specific detection of microRNA Microchim. Acta 180 2013 397
12. S.P. Fang, H.J. Lee, A.W. Wark, and R.M. Corn Attomole microarray detection of microRNAs by nanoparticle-amplified SPR imaging measurements of surface polyadenylation reactions J. Am. Chem. Soc. 128 2006 14044
13. M. Wanunu, T. Dadosh, V. Ray, J. Jin, L. McReynolds, and M. Drndić Rapid electronic detection of probe-specific microRNAs using thin nanopore sensors Nat. Nanotechnol. 5 2010 807
14. D.M. Wambua, B.A. Tannous, and N.H.L. Chiu Creating mass signatures for the detection of microRNA Anal. Methods 4 2012 3453
15. S. Campuzano, M. Pedrero, and J.M. Pingarrón Electrochemical genosensors for the detection of cancer-related miRNAs Anal. Bioanal. Chem. 406 2014 27
16. A.A. Jamali, M. Pourhassan-Moghaddam, J.E.N. Dolatabadi, and Y. Omidi Nanomaterials on the road to microRNA detection with optical and electrochemical nanobiosensors Trends Anal. Chem. 55 2014 24
17. Z. Gao A highly sensitive electrochemical assay for microRNA expression profiling Analyst 137 2012 1674
18. T. Kilic, S.N. Topkaya, D.O. Ariksoysal, M. Ozsoz, P. Ballar, Y. Erac, and O. Gozen Electrochemical based detection of microRNA, mir21 in breast cancer cells Biosens. Bioelectron. 38 2012 195
19. C. Pöhlmann, and M. Sprinzl Electrochemical detection of microRNAs via gap hybridization assay Anal. Chem. 82 2010 4434
20. Y. Wen, H. Pei, Y. Shen, J. Xi, M. Lin, N. Lu, X. Shen, J. Li, and C. Fan DNA nanostructure-based interfacial engineering for PCR-free ultrasensitive electrochemical analysis of microRNA Sci. Rep. 2 2012 867
21. G. Xiang, D. Jiang, F. Luo, F. Liu, L. Liu, and X. Pu Sensitive detection of microRNAs using hemin/G-quadruplexconcatamers as trace labels and RNA endonuclease-aided target recycling for amplification Sensor. Actuators B: Chem. 195 2014 515
22. Z.Q. Gao, and Z.C. Yang Detection of microRNAs using electrocatalytic nanoparticle tags Anal. Chem. 78 2006 1470
23. X. Wu, Y. Chai, R. Yuan, H. Su, and J. Han A novel label-free electrochemical microRNA biosensor using Pd nanoparticles as enhancer and linker Analyst 138 2013 1060
24. Y. Peng, and Z. Gao Amplified detection of microRNA based on ruthenium oxide nanoparticle-initiated deposition of an insulating film Anal. Chem. 83 2011 820
25. N. Xia, L. Zhang, G. Wang, Q. Feng, and L. Liu Label-free and sensitive strategy for microRNAs detection based on the formation of boronate ester bonds and the dual-amplification of gold nanoparticles Biosens. Bioelectron. 47 2013 461
26. H. Dong, S. Jin, H. Ju, K. Hao, L.-P. Xu, H. Lu, and X. Zhang Trace and label-free microRNA detection using oligonucleotide encapsulated silver nanoclusters as probes Anal. Chem. 84 2012 8670
27. P. Ramnani, Y. Gao, M. Ozsoz, and A. Mulchandani Electronic detection of microRNA at attomolar level with high specificity Anal. Chem. 85 2013 8061
28. A. Erdem, and G. Congur Label-free voltammetric detection of MicroRNAs at multi-channel screen printed array of electrodes comparison to graphite sensors Talanta 118 2014 7
29. D. Wang, L. Hu, H. Zhou, E.S. Abdel-Halim, and J.-J. Zhu Molecular beacon structure mediated rolling circle amplification for ultrasensitive electrochemical detection of microRNA based on quantum dots tagging Electrochem. Commun. 33 2013 80
30. W. Zhu, X. Su, X. Gao, Z. Dai, and X. Zou A label-free and PCR-free electrochemical assay for multiplexed microRNA profiles by ligase chain reaction coupling with quantum dots barcodes Biosens. Bioelectron. 53 2014 414
31. Z. Fang, and S.O. Kelley Direct electrocatalytic mRNA detection using PNA-nanowire sensors Anal. Chem. 81 2009 612
32. H. Yang, A. Hui, G. Pampalakis, L. Soleymani, F.F. Liu, E.H. Sargent, and S.O. Kelley Direct, electronic microRNA detection for the rapid determination of differential expression profiles Angew. Chem. Int. Ed. 48 2009 8461
33. H. Yin, Y. Zhou, C. Chen, L. Zhu, and S. Ai An electrochemical signal 'off-on' sensing platform for microRNA detection Analyst 137 2012 1389
34. H. Yin, Y. Zhou, H. Zhang, X. Meng, and S. Ai Electrochemical determination of microRNA-21 based on graphene, LNA integrated molecular beacon, AuNPs and biotin multifunctional bio bar codes and enzymatic assay system Biosens. Bioelectron. 33 2012 247
35. L. Liu, N. Xia, H. Liu, X. Kang, X. Liu, C. Xue, and X. He Highly sensitive and label-free electrochemical detection of microRNAs based on triple signal amplification of multifunctional gold nanoparticles, enzymes and redox-cycling reaction Biosens. Bioelectron. 53 2014 399
36. H. Yang Enzyme-based ultrasensitive electrochemical biosensors Curr. Opin. Chem. Biol. 16 2012 422
37. A. Walter, J. Wu, G.-U. Flechsig, D.A. Haake, and J. Wang Redox cycling amplified electrochemical detection of DNA hybridization: application to pathogen E. coli bacterial RNA Anal. Chim. Acta 689 2011 29
38. N. Xia, F. Ma, F. Zhao, Q. He, J. Du, S. Li, J. Chen, and L. Liu Comparing the performances of electrochemical sensors using p-aminophenol redox cycling by different reductants on gold electrodes modified with self-assembled monolayers Electrochim. Acta 109 2013 348
39. Q. Xi, D.M. Zhou, Y.Y. Kan, J. Ge, Z.K. Wu, R.Q. Yu, and J.H. Jiang Highly sensitive and selective strategy for microRNA detection based on WS2 nanosheet mediated fluorescence quenching and duplex-specific nuclease signal amplification Anal. Chem. 86 2014 1361
40. B.-C. Yin, Y.-Q. Liu, and B.-C. Ye One-step, multiplexed fluorescence detection of microRNAs based on duplex-specific nuclease signal amplification J. Am. Chem. Soc. 134 2012 5064
41. F. Degliangeli, P. Kshirsagar, V. Brunetti, P.P. Pompa, and R. Fiammengo Absolute and direct microRNA quantification using DNA-gold nanoparticle probes J. Am. Chem. Soc. 136 2014 2264
42. Y. Ren, H. Deng, W. Shen, and Z. Gao A highly sensitive and selective electrochemical biosensor for direct detection of microRNAs in serum Anal. Chem. 85 2013 4784
43. R. Levicky, T.M. Herne, M.J. Tarlov, and S.K. Salija Using self-assembly to control the structure of DNA monolayers on gold: a neutron reflectivity study J. Am. Chem. Soc. 120 1998 9787
44. V.E. Anisimova, D.V. Rebrikov, D.A. Shagin, V.B. Kozhemyako, N.I. Menzorova, D.B. Staroverov, R. Ziganshin, L.L. Vagner, V.A. Rasskazov, S.A. Lukyanov, and A.S. Shcheglov Isolation, characterization and molecular cloning of duplex-specific nuclease from the hepatopancreas of the Kamchatka crab BMC Biochem. 9 2008 14
45. F. Bettazzi, E. Hamid-Asl, C. Lucia Esposito, C. Quintavalle, N. Formisano, S. Laschi, S. Catuogno, M. Iaboni, G. Marrazza, M. Mascini, L. Cerchia, V. De Franciscis, G. Condorelli, and I. Palchetti Electrochemical detection of miRNA-222 by use of a magnetic bead-based bioassay Anal. Bioanal. Chem. 405 2013 1025
46. F. Cheng, T. He, J. Zhang, J. Shi, E.S. Abdel-Halim, and J. Zhu Bimetallic Pd-Pt supported graphene promoted enzymatic redox cycling for ultrasensitive electrochemical quantification of microRNA from cell lysates Analyst 2014 10.1039/C4AN00777H