-
1
-
-
33644649616
-
High-throughput DNA methylation profiling using universal bead arrays
-
Bibikova, M. et al. (2006) High-throughput DNA methylation profiling using universal bead arrays. Genome Res., 16, 383-393.
-
(2006)
Genome Res.
, vol.16
, pp. 383-393
-
-
Bibikova, M.1
-
2
-
-
33749041913
-
Staging of esophageal carcinoma: Length of tumor and number of involved regional lymph nodes. Are these independent prognostic factors?
-
Bollschweiler, E. et al. (2006) Staging of esophageal carcinoma: length of tumor and number of involved regional lymph nodes. Are these independent prognostic factors? J. Surg. Oncol., 94, 355-363.
-
(2006)
J. Surg. Oncol.
, vol.94
, pp. 355-363
-
-
Bollschweiler, E.1
-
3
-
-
5044245707
-
Gene co-expression network topology provides a framework for molecular characterization of cellular state
-
Carter, S.L. et al. (2004) Gene co-expression network topology provides a framework for molecular characterization of cellular state. Bioinformatics, 20, 2242-2250.
-
(2004)
Bioinformatics
, vol.20
, pp. 2242-2250
-
-
Carter, S.L.1
-
4
-
-
78651332286
-
Pathway Commons, a web resource for biological pathway data
-
Cerami, E.G. et al. (2011) Pathway Commons, a web resource for biological pathway data. Nucleic Acids Res., 39, D685-D690.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D685-D690
-
-
Cerami, E.G.1
-
5
-
-
35348891430
-
Network-based classification of breast cancer metastasis
-
Chuang, H.Y. et al. (2007) Network-based classification of breast cancer metastasis. Mol. Syst. Biol., 3, 140.
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 140
-
-
Chuang, H.Y.1
-
7
-
-
37349068664
-
A map of human cancer signaling
-
Cui, Q. et al. (2007) A map of human cancer signaling. Mol. Syst. Biol., 3, 152.
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 152
-
-
Cui, Q.1
-
8
-
-
0038005018
-
DAVID: Database for annotation, visualization, and integrated discovery
-
Dennis, G. Jr et al. (2003) DAVID: Database for annotation, visualization, and integrated discovery. Genome Biol., 4, P3.
-
(2003)
Genome Biol.
, vol.4
, pp. P3
-
-
Dennis, G.1
-
9
-
-
0001678182
-
The measure of association in a 22 table
-
Edwards, A.W.F. (1963) The measure of association in a 22 table. J. R. Stat. Soc., 126, 109-114.
-
(1963)
J. R. Stat. Soc.
, vol.126
, pp. 109-114
-
-
Edwards, A.W.F.1
-
11
-
-
84857836068
-
Interactome-transcriptome integration for predicting distant metastasis in breast cancer
-
Garcia, M. et al. (2012) Interactome-transcriptome integration for predicting distant metastasis in breast cancer. Bioinformatics, 28, 672-678.
-
(2012)
Bioinformatics
, vol.28
, pp. 672-678
-
-
Garcia, M.1
-
12
-
-
79959743101
-
Interleukin-6 promotes tumorigenesis by altering DNA methylation in oral cancer cells
-
Gasche, J.A. et al. (2011) Interleukin-6 promotes tumorigenesis by altering DNA methylation in oral cancer cells. Int. J. Cancer, 129, 1053-1063.
-
(2011)
Int. J. Cancer
, vol.129
, pp. 1053-1063
-
-
Gasche, J.A.1
-
13
-
-
77950346282
-
Immunity, inflammation, and cancer
-
Grivennikov, S.I. et al. (2010) Immunity, inflammation, and cancer. Cell, 140, 883-899.
-
(2010)
Cell
, vol.140
, pp. 883-899
-
-
Grivennikov, S.I.1
-
14
-
-
84890425720
-
Decreased expression and aberrant methylation of Gadd45G is associated with tumor progression and poor prognosis in esophageal squamous cell carcinoma
-
Guo, W. et al. (2013) Decreased expression and aberrant methylation of Gadd45G is associated with tumor progression and poor prognosis in esophageal squamous cell carcinoma. Clin. Exp. Metastasis, 30, 977-992.
-
(2013)
Clin. Exp. Metastasis
, vol.30
, pp. 977-992
-
-
Guo, W.1
-
15
-
-
79955808176
-
Identification and validation of DNA methylation markers to predict lymph node metastasis of esophageal squamous cell carcinomas
-
Gyobu, K. et al. (2011) Identification and validation of DNA methylation markers to predict lymph node metastasis of esophageal squamous cell carcinomas. Ann. Surg. Oncol., 18, 1185-1194.
-
(2011)
Ann. Surg. Oncol.
, vol.18
, pp. 1185-1194
-
-
Gyobu, K.1
-
16
-
-
58249092965
-
Mechanisms of metastasis
-
Hunter, K.W. et al. (2008)Mechanisms of metastasis. Breast Cancer Res., 10 (Suppl. 1), S2.
-
(2008)
Breast Cancer Res.
, vol.10
, pp. S2
-
-
Hunter, K.W.1
-
17
-
-
84873989809
-
LINE-1 hypomethylation is associated with a poor prognosis among patients with curatively resected esophageal squamous cell carcinoma
-
Iwagami, S. et al. (2013) LINE-1 hypomethylation is associated with a poor prognosis among patients with curatively resected esophageal squamous cell carcinoma. Ann. Surg., 257, 449-455.
-
(2013)
Ann. Surg.
, vol.257
, pp. 449-455
-
-
Iwagami, S.1
-
18
-
-
78649328949
-
Global profiling of histone and DNA methylation reveals epigenetic-based regulation of gene expression during epithelial to mesenchymal transition in prostate cells
-
Ke, X.S. et al. (2010) Global profiling of histone and DNA methylation reveals epigenetic-based regulation of gene expression during epithelial to mesenchymal transition in prostate cells. BMC Genomics, 11, 669.
-
(2010)
BMC Genomics
, vol.11
, pp. 669
-
-
Ke, X.S.1
-
19
-
-
84871597894
-
Multi-analyte network markers for tumor prognosis
-
Kim, J. et al. (2012) Multi-analyte network markers for tumor prognosis. PloS One, 7, e52973.
-
(2012)
PloS One
, vol.7
, pp. e52973
-
-
Kim, J.1
-
20
-
-
36749032648
-
A promoter methylation pattern in the N-methyl-D-aspartate receptor 2B gene predicts poor prognosis in esophageal squamous cell carcinoma
-
Kim, M.S. et al. (2007) A promoter methylation pattern in the N-methyl-D-aspartate receptor 2B gene predicts poor prognosis in esophageal squamous cell carcinoma. Clin. Cancer Res., 13, 6658-6665.
-
(2007)
Clin. Cancer Res.
, vol.13
, pp. 6658-6665
-
-
Kim, M.S.1
-
21
-
-
0026914112
-
Problems for knowledge discovery in databases and their treatment in the statistics interpreter explora
-
Klosgen, W. (1992) Problems for knowledge discovery in databases and their treatment in the statistics interpreter explora. Int. J. Intell. Syst., 7, 649-673.
-
(1992)
Int. J. Intell. Syst.
, vol.7
, pp. 649-673
-
-
Klosgen, W.1
-
22
-
-
4243148480
-
Authoritative sources in a hyperlinked environment
-
Kleinberg, J.M. (1999) Authoritative sources in a hyperlinked environment. J. ACM, 46, 604-632.
-
(1999)
J. ACM
, vol.46
, pp. 604-632
-
-
Kleinberg, J.M.1
-
23
-
-
79956003644
-
Malignant cutaneous T-cell lymphoma cells express IL-17 utilizing the Jak3/Stat3 signaling pathway
-
Krejsgaard, T. et al. (2011) Malignant cutaneous T-cell lymphoma cells express IL-17 utilizing the Jak3/Stat3 signaling pathway. J. Invest. Dermatol., 131, 1331-1338.
-
(2011)
J. Invest. Dermatol.
, vol.131
, pp. 1331-1338
-
-
Krejsgaard, T.1
-
24
-
-
0038576158
-
The power and the promise of DNA methylation markers
-
Laird, P.W. (2003) The power and the promise of DNA methylation markers. Nat. Rev. Cancer, 3, 253-266.
-
(2003)
Nat. Rev. Cancer
, vol.3
, pp. 253-266
-
-
Laird, P.W.1
-
25
-
-
33646179153
-
Aberrant methylation of fragile histidine triad gene is associated with poor prognosis in early stage esophageal squamous cell carcinoma
-
Lee, E.J. et al. (2006) Aberrant methylation of fragile histidine triad gene is associated with poor prognosis in early stage esophageal squamous cell carcinoma. Eur. J. Cancer, 42, 972-980.
-
(2006)
Eur. J. Cancer
, vol.42
, pp. 972-980
-
-
Lee, E.J.1
-
26
-
-
84864448762
-
SurvNet: A web server for identifying network-based biomarkers that most correlate with patient survival data
-
Li, J. et al. (2012) SurvNet: a web server for identifying network-based biomarkers that most correlate with patient survival data. Nucleic Acids Res., 40, W123-W126.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. W123-W126
-
-
Li, J.1
-
27
-
-
34248141100
-
A cytokine-mediated link between innate immunity, inflammation, and cancer
-
Lin, W.W. and Karin, M. (2007) A cytokine-mediated link between innate immunity, inflammation, and cancer. J. Clin. Invest., 117, 1175-1183.
-
(2007)
J. Clin. Invest.
, vol.117
, pp. 1175-1183
-
-
Lin, W.W.1
Karin, M.2
-
28
-
-
21144442201
-
PGP9.5 promoter methylation is an independent prognostic factor for esophageal squamous cell carcinoma
-
Mandelker, D.L. et al. (2005) PGP9.5 promoter methylation is an independent prognostic factor for esophageal squamous cell carcinoma. Cancer Res., 65, 4963-4968.
-
(2005)
Cancer Res.
, vol.65
, pp. 4963-4968
-
-
Mandelker, D.L.1
-
29
-
-
79961023271
-
Genome-scale epigenetic reprogramming during epithelial- to-mesenchymal transition
-
McDonald, O.G. et al. (2011) Genome-scale epigenetic reprogramming during epithelial- to-mesenchymal transition. Nat. Struct. Mol. Biol., 18, 867-874.
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 867-874
-
-
McDonald, O.G.1
-
30
-
-
0032919364
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Ogata, H. et al. (1999) KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res., 27, 29-34.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 29-34
-
-
Ogata, H.1
-
31
-
-
77953537026
-
Node centrality in weighted networks: Generalizing degree and shortest paths
-
Opsahl, T. et al. (2010) Node centrality in weighted networks: generalizing degree and shortest paths. Soc. Netw., 32, 245-251.
-
(2010)
Soc. Netw.
, vol.32
, pp. 245-251
-
-
Opsahl, T.1
-
32
-
-
77950672712
-
Network-based Identification of novel cancer genes
-
Ostlund, G. et al. (2010) Network-based Identification of novel cancer genes. Mol. Cell Proteomics, 9, 648-655.
-
(2010)
Mol. Cell Proteomics
, vol.9
, pp. 648-655
-
-
Ostlund, G.1
-
33
-
-
84873197641
-
Oesophageal carcinoma
-
Pennathur, A. et al. (2013) Oesophageal carcinoma. Lancet, 381, 400-412.
-
(2013)
Lancet
, vol.381
, pp. 400-412
-
-
Pennathur, A.1
-
34
-
-
0002877253
-
Discovery, Analysis, and Presentation of Strong Rules
-
AAAI/MIT Press, Cambridge, MA
-
Piatetsky-Shapiro, G. (1991) Discovery, Analysis, and Presentation of Strong Rules. Knowledge Discovery in Databases. AAAI/MIT Press, Cambridge, MA.
-
(1991)
Knowledge Discovery in Databases
-
-
Piatetsky-Shapiro, G.1
-
35
-
-
84911366013
-
An empirical evaluation of interest-level criteria
-
Dasarathy, B.V. (ed.) Orlando, FL, USA
-
Sahar, S. and Mansour, Y. (1999) An empirical evaluation of interest-level criteria. In: Dasarathy, B.V. (ed.) Data Mining and Knowledge Discovery: Theory, Tools, and Technology. Orlando, FL, USA.
-
(1999)
Data Mining and Knowledge Discovery: Theory, Tools, and Technology
-
-
Sahar, S.1
Mansour, Y.2
-
36
-
-
33644873184
-
BioGRID: A general repository for interaction datasets
-
Stark, C. et al. (2006) BioGRID: a general repository for interaction datasets. Nucleic Acids Res., 34, D535-D539.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. D535-D539
-
-
Stark, C.1
-
37
-
-
84877632301
-
Network-based regularization for matched casecontrol analysis of high-dimensional DNA methylation data
-
Sun, H. and Wang, S. (2013) Network-based regularization for matched casecontrol analysis of high-dimensional DNA methylation data. Stat. Med., 32, 2127-2139.
-
(2013)
Stat. Med.
, vol.32
, pp. 2127-2139
-
-
Sun, H.1
Wang, S.2
-
38
-
-
43749098985
-
DNA methylation landscapes: Provocative insights from epigenomics
-
Suzuki, M.M. and Bird, A. (2008) DNA methylation landscapes: provocative insights from epigenomics. Nat. Rev. Genet., 9, 465-476.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 465-476
-
-
Suzuki, M.M.1
Bird, A.2
-
40
-
-
58249098396
-
Quantitative analysis of DNA methylation profiles in lung cancer identifies aberrant DNA methylation of specific genes and its association with gender and cancer risk factors
-
Vaissiere, T. et al. (2009) Quantitative analysis of DNA methylation profiles in lung cancer identifies aberrant DNA methylation of specific genes and its association with gender and cancer risk factors. Cancer Res., 69, 243-252.
-
(2009)
Cancer Res.
, vol.69
, pp. 243-252
-
-
Vaissiere, T.1
-
41
-
-
84861679981
-
Preoperative chemoradiotherapy for esophageal or junctional cancer
-
van Hagen, P. et al. (2012) Preoperative chemoradiotherapy for esophageal or junctional cancer. N. Engl. J. Med., 366, 2074-2084.
-
(2012)
N. Engl. J. Med.
, vol.366
, pp. 2074-2084
-
-
Van Hagen, P.1
-
42
-
-
84874433595
-
Tumor necrosis factor alpha- and interleukin-1beta-dependent induction of CCL3 expression by nucleus pulposus cells promotes macrophage migration through CCR1
-
Wang, J. et al. (2013) Tumor necrosis factor alpha- and interleukin-1beta-dependent induction of CCL3 expression by nucleus pulposus cells promotes macrophage migration through CCR1. Arthritis Rheum., 65, 832-842.
-
(2013)
Arthritis Rheum.
, vol.65
, pp. 832-842
-
-
Wang, J.1
-
43
-
-
84883321286
-
Distinctive topology of age-associated epigenetic drift in the human interactome
-
West, J. et al. (2013) Distinctive topology of age-associated epigenetic drift in the human interactome. Proc. Natl Acad. Sci. USA, 110, 14138-14143.
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 14138-14143
-
-
West, J.1
-
44
-
-
77952376110
-
Algorithms for estimating relative importance in networks
-
ACM, Washington, DC
-
White, S. and Smyth, P. (2003) Algorithms for estimating relative importance in networks. In: Proceedings of the ninth ACM SIGKDD international conference on Knowledge discovery and data mining. ACM, Washington, DC, pp. 266-275.
-
(2003)
Proceedings of the Ninth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining
, pp. 266-275
-
-
White, S.1
Smyth, P.2
|