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Volumn 30, Issue 19, 2014, Pages 2741-2746

Detecting differential protein expression in large-scale population proteomics

Author keywords

[No Author keywords available]

Indexed keywords

PEPTIDE; PROTEIN; PROTEOME;

EID: 84911431637     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu341     Document Type: Article
Times cited : (15)

References (25)
  • 1
    • 84871297843 scopus 로고    scopus 로고
    • Next-generation proteomics: Towards an integrative view of proteome dynamics
    • Altelaar, A.F. et al. (2013) Next-generation proteomics: towards an integrative view of proteome dynamics. Nat. Rev. Genet., 14, 35-48.
    • (2013) Nat. Rev. Genet. , vol.14 , pp. 35-48
    • Altelaar, A.F.1
  • 2
    • 0036827626 scopus 로고    scopus 로고
    • The p127 subunit (DDB1) of the UV-DNA damage repair binding protein is essential for the targeted degradation of STAT1 by the v protein of the paramyxovirus simian virus 5
    • Andrejeva, J. et al. (2002) The p127 subunit (DDB1) of the UV-DNA damage repair binding protein is essential for the targeted degradation of STAT1 by the V protein of the paramyxovirus simian virus 5. J. Virol., 76, 11379-11386.
    • (2002) J. Virol. , vol.76 , pp. 11379-11386
    • Andrejeva, J.1
  • 3
    • 57449099865 scopus 로고    scopus 로고
    • Maxquant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
    • Cox, J. and Mann, M. (2008) Maxquant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol., 26, 1367-1372.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 1367-1372
    • Cox, J.1    Mann, M.2
  • 4
    • 0029165064 scopus 로고
    • Chromosomal localization and cDNA cloning of the genes (DDB1 and DDB2) for the p127 and p48 subunits of a human damage-specific {DNA} binding protein
    • Dualan, R. et al. (1995) Chromosomal localization and cDNA cloning of the genes (DDB1 AND DDB2) for the p127 and p48 subunits of a human damage-specific {DNA} binding protein. Genomics, 29, 62-69.
    • (1995) Genomics , vol.29 , pp. 62-69
    • Dualan, R.1
  • 5
    • 0001325611 scopus 로고
    • Wald's test as applied to hypotheses in logit analysis
    • Hauck, W.W. and Donner, A. (1977) Wald's test as applied to hypotheses in logit analysis. J. Am. Statist. Assoc., 72, 851-853.
    • (1977) J. Am. Statist. Assoc. , vol.72 , pp. 851-853
    • Hauck, W.W.1    Donner, A.2
  • 6
    • 68549137863 scopus 로고    scopus 로고
    • A statistical framework for protein quantitation in bottom-up MS-based proteomics
    • Karpievitch, Y. et al. (2009) A statistical framework for protein quantitation in bottom-up MS-based proteomics. Bioinformatics, 25, 2028-2034.
    • (2009) Bioinformatics , vol.25 , pp. 2028-2034
    • Karpievitch, Y.1
  • 8
    • 84892799863 scopus 로고    scopus 로고
    • Premature activation of the SLX4 complex by Vpr promotes G2/M arrest and escape from innate immune sensing
    • Laguette, N. et al. (2014) Premature activation of the SLX4 complex by Vpr promotes G2/M arrest and escape from innate immune sensing. Cell, 156, 134-145.
    • (2014) Cell , vol.156 , pp. 134-145
    • Laguette, N.1
  • 9
    • 0038365225 scopus 로고    scopus 로고
    • Hepatitis B virus X protein and simian virus 5 v protein exhibit similar UV-DDB1 binding properties to mediate distinct activities
    • Leupin, O. et al. (2003) Hepatitis B virus X protein and simian virus 5 V protein exhibit similar UV-DDB1 binding properties to mediate distinct activities. J. Virol., 77, 6274-6283.
    • (2003) J. Virol. , vol.77 , pp. 6274-6283
    • Leupin, O.1
  • 10
    • 77957221582 scopus 로고    scopus 로고
    • A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics
    • Nesvizhskii, A.I. (2010) A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics. J. Proteomics, 73, 2092-2123.
    • (2010) J. Proteomics , vol.73 , pp. 2092-2123
    • Nesvizhskii, A.I.1
  • 11
    • 38649099066 scopus 로고    scopus 로고
    • Statistical analysis of relative labeled mass spectrometry data from complex samples using anova
    • Oberg, A.L. et al. (2008) Statistical analysis of relative labeled mass spectrometry data from complex samples using anova. J. Proteome Res., 7, 225-233.
    • (2008) J. Proteome Res. , vol.7 , pp. 225-233
    • Oberg, A.L.1
  • 12
    • 77952962428 scopus 로고    scopus 로고
    • Elafin is a biomarker of graft-versus-host disease of the skin
    • Paczesny, S. et al. (2010) Elafin is a biomarker of graft-versus-host disease of the skin. Sci. Transl. Med., 2, 13ra2.
    • (2010) Sci. Transl. Med. , vol.2 , pp. 13ra2
    • Paczesny, S.1
  • 13
    • 27144433162 scopus 로고    scopus 로고
    • Simian virus 5 v protein acts as an adaptor, linking DDB1 to STAT2, to facilitate the ubiquitination of STAT1
    • Precious, B. et al. (2005) Simian virus 5 V protein acts as an adaptor, linking DDB1 TO STAT2, to facilitate the ubiquitination of STAT1. J. Virol., 79, 13434-13441.
    • (2005) J. Virol. , vol.79 , pp. 13434-13441
    • Precious, B.1
  • 14
    • 77956330708 scopus 로고    scopus 로고
    • Plasma proteome response to severe burn injury revealed by 18o-labeled "universal" reference-based quantitative proteomics
    • Qian, W.J. et al. (2010) Plasma proteome response to severe burn injury revealed by 18o-labeled "universal" reference-based quantitative proteomics. J. Proteome Res., 9, 4779-4789.
    • (2010) J. Proteome Res. , vol.9 , pp. 4779-4789
    • Qian, W.J.1
  • 15
    • 77949312982 scopus 로고    scopus 로고
    • Matrix metalloproteinase-8 inactivates macrophage inflammatory protein-1 to reduce acute lung inflammation and injury in mice
    • Quintero, P.A. et al. (2010) Matrix metalloproteinase-8 inactivates macrophage inflammatory protein-1 to reduce acute lung inflammation and injury in mice. J. Immunol., 184, 1575-1588.
    • (2010) J. Immunol. , vol.184 , pp. 1575-1588
    • Quintero, P.A.1
  • 16
    • 14344250874 scopus 로고    scopus 로고
    • Informatics platform for global proteomic profiling and biomarker discovery using liquid chromatography-tandem mass spectrometry
    • Radulovic, D. et al. (2004) Informatics platform for global proteomic profiling and biomarker discovery using liquid chromatography-tandem mass spectrometry. Mol. Cell. Proteomics, 3, 984-997.
    • (2004) Mol. Cell. Proteomics , vol.3 , pp. 984-997
    • Radulovic, D.1
  • 17
    • 49749115277 scopus 로고    scopus 로고
    • Comparison of a label-free quantitative proteomic method based on peptide ion current area to the isotope coded affinity tag method
    • Ryu, S. et al. (2008) Comparison of a label-free quantitative proteomic method based on peptide ion current area to the isotope coded affinity tag method. Cancer Inform., 6, 243-255.
    • (2008) Cancer Inform. , vol.6 , pp. 243-255
    • Ryu, S.1
  • 19
    • 0036020892 scopus 로고    scopus 로고
    • A direct approach to false discovery rates
    • Storey, J.D. (2002) A direct approach to false discovery rates. J. R. Stat. Soc. Stat. Methodol., 64, 479-498.
    • (2002) J. R. Stat. Soc. Stat. Methodol. , vol.64 , pp. 479-498
    • Storey, J.D.1
  • 20
    • 33747885134 scopus 로고    scopus 로고
    • A computational approach toward label-free protein quantification using predicted peptide detectability
    • Tang, H. et al. (2006) A computational approach toward label-free protein quantification using predicted peptide detectability. Bioinformatics, 22, e481-e488.
    • (2006) Bioinformatics , vol.22 , pp. e481-e488
    • Tang, H.1
  • 21
    • 33747838164 scopus 로고    scopus 로고
    • Normalization regarding non-random missing values in high-throughput mass spectrometry data
    • Wang, P. et al. (2006) Normalization regarding non-random missing values in high-throughput mass spectrometry data. Pac. Symp. Biocomput., 315-326.
    • (2006) Pac. Symp. Biocomput. , pp. 315-326
    • Wang, P.1
  • 22
    • 10744233766 scopus 로고    scopus 로고
    • Quantification of proteins and metabolites by mass spec-trometry without isotopic labeling or spiked standards
    • Wang, W. et al. (2003) Quantification of proteins and metabolites by mass spec-trometry without isotopic labeling or spiked standards. Anal. Chem., 75, 4818-4826.
    • (2003) Anal. Chem. , vol.75 , pp. 4818-4826
    • Wang, W.1
  • 23
    • 84863517391 scopus 로고    scopus 로고
    • A hybrid approach to protein differential expression in mass spectrometry-based proteomics
    • Wang, X. et al. (2012) A hybrid approach to protein differential expression in mass spectrometry-based proteomics. Bioinformatics, 28, 1586-1591.
    • (2012) Bioinformatics , vol.28 , pp. 1586-1591
    • Wang, X.1
  • 25
    • 84862908403 scopus 로고    scopus 로고
    • A genomic storm in critically injured humans
    • Xiao, W. et al. (2011) A genomic storm in critically injured humans. J. Exp. Med., 208, 2581-2590.
    • (2011) J. Exp. Med. , vol.208 , pp. 2581-2590
    • Xiao, W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.