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Volumn 27, Issue 20, 2011, Pages 2913-2914

Fast and accurate prediction of protein side-chain conformations

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

EID: 80053986637     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr482     Document Type: Note
Times cited : (55)

References (10)
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    • Cao, Y.1
  • 2
    • 0030987610 scopus 로고    scopus 로고
    • Probing the role of packing specificity in protein design
    • Dahiyat,B.I. and Mayo,S.L. (1997) Probing the role of packing specificity in protein design. Proc. Natl Acad. Sci. USA, 94, 10172-10177.
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 10172-10177
    • Dahiyat, B.I.1    Mayo, S.L.2
  • 3
    • 0037375615 scopus 로고    scopus 로고
    • Ab initio construction of polypeptide fragments: accuracy of loop decoy discrimination by an all-atom statistical potential and theAMBER force field with the Generalized Born solvation model
    • de Bakker,P.I. et al. (2003) Ab initio construction of polypeptide fragments: accuracy of loop decoy discrimination by an all-atom statistical potential and theAMBER force field with the Generalized Born solvation model. Proteins Struct. Funct. Bioinform., 51, 21-40.
    • (2003) Proteins Struct. Funct. Bioinform. , vol.51 , pp. 21-40
    • de Bakker, P.I.1
  • 4
    • 70450106216 scopus 로고    scopus 로고
    • Improved prediction of protein side-chain conformations with SCWRL4
    • Krivov,G.G. et al. (2009) Improved prediction of protein side-chain conformations with SCWRL4. Proteins Struct. Funct. Bioinform., 77, 778-795.
    • (2009) Proteins Struct. Funct. Bioinform. , vol.77 , pp. 778-795
    • Krivov, G.G.1
  • 5
    • 0036149564 scopus 로고    scopus 로고
    • Side-chain modeling with an optimized scoring function
    • Liang,S. and Grishin,N.V. (2002) Side-chain modeling with an optimized scoring function. Protein Sci., 11, 322-331.
    • (2002) Protein Sci , vol.11 , pp. 322-331
    • Liang, S.1    Grishin, N.V.2
  • 6
    • 79953753344 scopus 로고    scopus 로고
    • Protein side chain modeling with orientation dependent atomic force fields derived by series expansions
    • Liang,S.D. et al. (2011a) Protein side chain modeling with orientation dependent atomic force fields derived by series expansions. J. Comput. Chem., 32, 1680-1686.
    • (2011) J. Comput. Chem. , vol.32 , pp. 1680-1686
    • Liang, S.D.1
  • 7
    • 79958766793 scopus 로고    scopus 로고
    • Protein loop selection using orientation dependent force fields derived by parameter optimization
    • Liang,S.D. et al. (2011b) Protein loop selection using orientation dependent force fields derived by parameter optimization. Proteins Struct. Funct. Bioinform., 79, 2260-2267.
    • (2011) Proteins Struct. Funct. Bioinform. , vol.79 , pp. 2260-2267
    • Liang, S.D.1
  • 8
    • 50049116635 scopus 로고    scopus 로고
    • OPUS-Rota: a fast and accurate method for side-chain modeling
    • Lu,M.Y. et al. (2008) OPUS-Rota: a fast and accurate method for side-chain modeling. Protein Sci., 17, 1576-1585.
    • (2008) Protein Sci , vol.17 , pp. 1576-1585
    • Lu, M.Y.1
  • 9
    • 1342310514 scopus 로고    scopus 로고
    • Improved side-chain prediction accuracy using an ab initio potential energy function and a very large rotamer library
    • Peterson,R.W. et al. (2004) Improved side-chain prediction accuracy using an ab initio potential energy function and a very large rotamer library. Protein Sci., 13, 735-751.
    • (2004) Protein Sci , vol.13 , pp. 735-751
    • Peterson, R.W.1
  • 10
    • 51349094337 scopus 로고    scopus 로고
    • Minimizing and learning energy functions for side-chain prediction
    • Yanover,C. et al. (2008) Minimizing and learning energy functions for side-chain prediction. J. Comput. Biol., 15, 899-911.
    • (2008) J. Comput. Biol. , vol.15 , pp. 899-9112
    • Yanover, C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.