-
1
-
-
0005008115
-
Evaluating the statistical significance of multiple distinct local alignments
-
Springer, New York:
-
Altschul SF (1997) Evaluating the statistical significance of multiple distinct local alignments. Theoretical and computational methods in genome research. Springer, New York, pp 1–14
-
(1997)
Theoretical and computational methods in genome research
, pp. 1-14
-
-
Altschul, S.F.1
-
2
-
-
0037255072
-
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
-
PID: 12520024, COI: 1:CAS:528:DC%2BD3sXhvFSmtL0%3D
-
Boeckmann B, Bairoch A, Apweiler R, Blatter M-C, Estreicher A, Gasteiger E, Martin MJ, Michoud K, O’Donovan C, Phan I (2003) The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res 31:365–370
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 365-370
-
-
Boeckmann, B.1
Bairoch, A.2
Apweiler, R.3
Blatter, M.-C.4
Estreicher, A.5
Gasteiger, E.6
Martin, M.J.7
Michoud, K.8
O’Donovan, C.9
Phan, I.10
-
3
-
-
0042622243
-
SVM-Prot: web-based support vector machine software for functional classification of a protein from its primary sequence
-
PID: 12824396, COI: 1:CAS:528:DC%2BD3sXltVWisrg%3D
-
Cai C, Han L, Ji ZL, Chen X, Chen YZ (2003) SVM-Prot: web-based support vector machine software for functional classification of a protein from its primary sequence. Nucleic Acids Res 31:3692–3697
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3692-3697
-
-
Cai, C.1
Han, L.2
Ji, Z.L.3
Chen, X.4
Chen, Y.Z.5
-
4
-
-
0842326624
-
Application of SVM to predict membrane protein types
-
PID: 14759643, COI: 1:CAS:528:DC%2BD2cXptFSltA%3D%3D
-
Cai Y-D, Ricardo P-W, Jen C-H, Chou K-C (2004) Application of SVM to predict membrane protein types. J Theor Biol 226:373–376
-
(2004)
J Theor Biol
, vol.226
, pp. 373-376
-
-
Cai, Y.-D.1
Ricardo, P.-W.2
Jen, C.-H.3
Chou, K.-C.4
-
5
-
-
34548009150
-
Prediction of apoptosis protein subcellular location using improved hybrid approach and pseudo-amino acid composition
-
PID: 17572445, COI: 1:CAS:528:DC%2BD2sXpsFWrsbs%3D
-
Chen Y-L, Li Q-Z (2007) Prediction of apoptosis protein subcellular location using improved hybrid approach and pseudo-amino acid composition. J Theor Biol 248:377–381
-
(2007)
J Theor Biol
, vol.248
, pp. 377-381
-
-
Chen, Y.-L.1
Li, Q.-Z.2
-
6
-
-
0029051959
-
A novel approach to predicting protein structural classes in a (20–1)-D amino acid composition space. Proteins: Structure
-
COI: 1:CAS:528:DyaK2MXls12rsb0%3D
-
Chou KC (1995) A novel approach to predicting protein structural classes in a (20–1)-D amino acid composition space. Proteins: Structure. Funct Bioinform 21:319–344
-
(1995)
Funct Bioinform
, vol.21
, pp. 319-344
-
-
Chou, K.C.1
-
7
-
-
0033554601
-
A key driving force in determination of protein structural classes
-
PID: 10527868, COI: 1:CAS:528:DyaK1MXms1ynt70%3D
-
Chou K-C (1999) A key driving force in determination of protein structural classes. Biochem Biophys Res Commun 264:216–224
-
(1999)
Biochem Biophys Res Commun
, vol.264
, pp. 216-224
-
-
Chou, K.-C.1
-
8
-
-
0035874091
-
Prediction of protein cellular attributes using pseudo-amino acid composition. Proteins: Structure
-
COI: 1:CAS:528:DC%2BD3MXjtFOls74%3D
-
Chou KC (2001) Prediction of protein cellular attributes using pseudo-amino acid composition. Proteins: Structure. Funct Bioinform 43:246–255
-
(2001)
Funct Bioinform
, vol.43
, pp. 246-255
-
-
Chou, K.C.1
-
9
-
-
23944438427
-
Prediction of G-protein-coupled receptor classes
-
PID: 16083294, COI: 1:CAS:528:DC%2BD2MXks1Kgsb4%3D
-
Chou K-C (2005) Prediction of G-protein-coupled receptor classes. J Proteome Res 4:1413–1418
-
(2005)
J Proteome Res
, vol.4
, pp. 1413-1418
-
-
Chou, K.-C.1
-
10
-
-
79951518208
-
Some remarks on protein attribute prediction and pseudo amino acid composition
-
PID: 21168420, COI: 1:CAS:528:DC%2BC3MXhvV2rs7k%3D
-
Chou K-C (2011) Some remarks on protein attribute prediction and pseudo amino acid composition. J Theor Biol 273:236–247
-
(2011)
J Theor Biol
, vol.273
, pp. 236-247
-
-
Chou, K.-C.1
-
11
-
-
34447095147
-
MemType-2L: a web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM
-
PID: 17586467, COI: 1:CAS:528:DC%2BD2sXnslSqtLw%3D
-
Chou K-C, Shen H-B (2007) MemType-2L: a web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM. Biochem Biophys Res Commun 360:339–345
-
(2007)
Biochem Biophys Res Commun
, vol.360
, pp. 339-345
-
-
Chou, K.-C.1
Shen, H.-B.2
-
12
-
-
79953316878
-
ILoc-Euk: a multi-label classifier for predicting the subcellular localization of singleplex and multiplex eukaryotic proteins
-
PID: 21483473, COI: 1:CAS:528:DC%2BC3MXkslyju7Y%3D
-
Chou K-C, Wu Z-C, Xiao X (2011) iLoc-Euk: a multi-label classifier for predicting the subcellular localization of singleplex and multiplex eukaryotic proteins. PLoS ONE 6:e18258
-
(2011)
PLoS ONE
, vol.6
, pp. e18258
-
-
Chou, K.-C.1
Wu, Z.-C.2
Xiao, X.3
-
13
-
-
21244494076
-
Using pseudo amino acid composition to predict protein subcellular location: approached with Lyapunov index, Bessel function, and Chebyshev filter
-
PID: 15889221, COI: 1:CAS:528:DC%2BD2MXlt1Kmurw%3D
-
Gao Y, Shao S, Xiao X, Ding Y, Huang Y, Huang Z, Chou K-C (2005) Using pseudo amino acid composition to predict protein subcellular location: approached with Lyapunov index, Bessel function, and Chebyshev filter. Amino Acids 28:373–376
-
(2005)
Amino Acids
, vol.28
, pp. 373-376
-
-
Gao, Y.1
Shao, S.2
Xiao, X.3
Ding, Y.4
Huang, Y.5
Huang, Z.6
Chou, K.-C.7
-
14
-
-
33845760114
-
Automated subcellular location determination and high-throughput microscopy
-
PID: 17199037, COI: 1:CAS:528:DC%2BD2sXpt1WjtQ%3D%3D
-
Glory E, Murphy RF (2007) Automated subcellular location determination and high-throughput microscopy. Dev Cell 12:7–16
-
(2007)
Dev Cell
, vol.12
, pp. 7-16
-
-
Glory, E.1
Murphy, R.F.2
-
15
-
-
84858731996
-
Mem-P Hybrid: hybrid features-based prediction system for classifying membrane protein types
-
PID: 22342883, COI: 1:CAS:528:DC%2BC38XltVaks7o%3D
-
Hayat M, Khan A (2012) Mem-P Hybrid: hybrid features-based prediction system for classifying membrane protein types. Anal Biochem 424:35–44
-
(2012)
Anal Biochem
, vol.424
, pp. 35-44
-
-
Hayat, M.1
Khan, A.2
-
16
-
-
0035957531
-
A novel method of protein secondary structure prediction with high segment overlap measure: support vector machine approach
-
PID: 11327775, COI: 1:CAS:528:DC%2BD3MXjtVShs7k%3D
-
Hua S, Sun Z (2001) A novel method of protein secondary structure prediction with high segment overlap measure: support vector machine approach. J Mol Biol 308:397–407
-
(2001)
J Mol Biol
, vol.308
, pp. 397-407
-
-
Hua, S.1
Sun, Z.2
-
17
-
-
84876379510
-
A multilabel model based on Chou’s pseudo-amino acid composition for Identifying membrane proteins with both single and multiple functional types
-
PID: 23546013, COI: 1:CAS:528:DC%2BC3sXlsVGrs74%3D
-
Huang C, Yuan J-Q (2013) A multilabel model based on Chou’s pseudo-amino acid composition for Identifying membrane proteins with both single and multiple functional types. J membr biol 246:327–334
-
(2013)
J membr biol
, vol.246
, pp. 327-334
-
-
Huang, C.1
Yuan, J.-Q.2
-
18
-
-
43549087105
-
Using the concept of chou’s pseudo amino acid composition to predict apoptosis proteins subcellular location: an approach by approximate entropy
-
Jian X, Wei R, Zhan T, Gu Q (2008) Using the concept of chou’s pseudo amino acid composition to predict apoptosis proteins subcellular location: an approach by approximate entropy. Protein Pept Lett 15:392–396
-
(2008)
Protein Pept Lett
, vol.15
, pp. 392-396
-
-
Jian, X.1
Wei, R.2
Zhan, T.3
Gu, Q.4
-
19
-
-
43149099231
-
Using Chou’s pseudo amino acid composition based on approximate entropy and an ensemble of AdaBoost classifiers to predict protein subnuclear location
-
PID: 18256886, COI: 1:CAS:528:DC%2BD1cXlsVOgs7w%3D
-
Jiang X, Wei R, Zhao Y, Zhang T (2008) Using Chou’s pseudo amino acid composition based on approximate entropy and an ensemble of AdaBoost classifiers to predict protein subnuclear location. Amino Acids 34:669–675
-
(2008)
Amino Acids
, vol.34
, pp. 669-675
-
-
Jiang, X.1
Wei, R.2
Zhao, Y.3
Zhang, T.4
-
20
-
-
84876370111
-
Predicting antibacterial peptides by the concept of Chou’s pseudo-amino acid composition and machine learning methods
-
PID: 22894156, COI: 1:CAS:528:DC%2BC3sXjvFOmsb0%3D
-
Khosravian M, Kazemi Faramarzi F, Mohammad Beigi M, Behbahani M, Mohabatkar H (2013) Predicting antibacterial peptides by the concept of Chou’s pseudo-amino acid composition and machine learning methods. Protein Pept Lett 20:180–186
-
(2013)
Protein Pept Lett
, vol.20
, pp. 180-186
-
-
Khosravian, M.1
Kazemi Faramarzi, F.2
Mohammad Beigi, M.3
Behbahani, M.4
Mohabatkar, H.5
-
21
-
-
38149120433
-
Using pseudo amino acid composition to predict protein subnuclear location with improved hybrid approach
-
PID: 17514493, COI: 1:CAS:528:DC%2BD1cXlt1Clug%3D%3D
-
Li F-M, Li Q-Z (2008) Using pseudo amino acid composition to predict protein subnuclear location with improved hybrid approach. Amino Acids 34:119–125
-
(2008)
Amino Acids
, vol.34
, pp. 119-125
-
-
Li, F.-M.1
Li, Q.-Z.2
-
22
-
-
84883658706
-
Theoretical and experimental biology in one
-
Lin S-X, Lapointe J (2013) Theoretical and experimental biology in one. J Biomed Sci Eng 6:435–442
-
(2013)
J Biomed Sci Eng
, vol.6
, pp. 435-442
-
-
Lin, S.-X.1
Lapointe, J.2
-
23
-
-
70350437815
-
Prediction of subcellular localization of apoptosis protein using Chou’s pseudo amino acid composition
-
PID: 19169652
-
Lin H, Wang H, Ding H, Chen Y-L, Li Q-Z (2009) Prediction of subcellular localization of apoptosis protein using Chou’s pseudo amino acid composition. Acta Biotheor 57:321–330
-
(2009)
Acta Biotheor
, vol.57
, pp. 321-330
-
-
Lin, H.1
Wang, H.2
Ding, H.3
Chen, Y.-L.4
Li, Q.-Z.5
-
24
-
-
84874928986
-
ILoc-Animal: a multi-label learning classifier for predicting subcellular localization of animal proteins
-
PID: 23370050, COI: 1:CAS:528:DC%2BC3sXjsVKrsb4%3D
-
Lin W-Z, Fang J-A, Xiao X, Chou K-C (2013) iLoc-Animal: a multi-label learning classifier for predicting subcellular localization of animal proteins. Mol BioSyst 9:634–644
-
(2013)
Mol BioSyst
, vol.9
, pp. 634-644
-
-
Lin, W.-Z.1
Fang, J.-A.2
Xiao, X.3
Chou, K.-C.4
-
25
-
-
79955564229
-
Prediction of GABA < sub > A receptor proteins using the concept of Chou’s pseudo-amino acid composition and support vector machine
-
PID: 21536049, COI: 1:CAS:528:DC%2BC3MXntlGhsLw%3D
-
Mohabatkar H, Mohammad Beigi M, Esmaeili A (2011) Prediction of GABA < sub > A receptor proteins using the concept of Chou’s pseudo-amino acid composition and support vector machine. J Theor Biol 281:18–23
-
(2011)
J Theor Biol
, vol.281
, pp. 18-23
-
-
Mohabatkar, H.1
Mohammad Beigi, M.2
Esmaeili, A.3
-
26
-
-
34447321808
-
Using pseudo amino acid composition to predict protein subnuclear localization: Approached with PSSM
-
Mundra P, Kumar M, Kumar KK, Jayaraman VK, Kulkarni BD (2007) Using pseudo amino acid composition to predict protein subnuclear localization: Approached with PSSM. Pattern Recogn Lett 28:1610–1615
-
(2007)
Pattern Recogn Lett
, vol.28
, pp. 1610-1615
-
-
Mundra, P.1
Kumar, M.2
Kumar, K.K.3
Jayaraman, V.K.4
Kulkarni, B.D.5
-
27
-
-
0022631926
-
The folding type of a protein is relevant to the amino acid composition
-
PID: 3957893, COI: 1:CAS:528:DyaL28Xkslektw%3D%3D
-
Nakashima H, Nishikawa K, Tatsuo O (1986) The folding type of a protein is relevant to the amino acid composition. J Biochem 99:153–162
-
(1986)
J Biochem
, vol.99
, pp. 153-162
-
-
Nakashima, H.1
Nishikawa, K.2
Tatsuo, O.3
-
28
-
-
33745190057
-
MppS: an ensemble of support vector machine based on multiple physicochemical properties of amino acids
-
Nanni L, Lumini A (2006) MppS: an ensemble of support vector machine based on multiple physicochemical properties of amino acids. Neurocomputing 69:1688–1690
-
(2006)
Neurocomputing
, vol.69
, pp. 1688-1690
-
-
Nanni, L.1
Lumini, A.2
-
29
-
-
34249776374
-
Prediction of membrane protein types from sequences and position-specific scoring matrices
-
PID: 17433369, COI: 1:CAS:528:DC%2BD2sXmtlWgu7w%3D
-
Pu X, Guo J, Leung H, Lin Y (2007) Prediction of membrane protein types from sequences and position-specific scoring matrices. J Theor Biol 247:259–265
-
(2007)
J Theor Biol
, vol.247
, pp. 259-265
-
-
Pu, X.1
Guo, J.2
Leung, H.3
Lin, Y.4
-
30
-
-
77955964484
-
Using the concept of chou’s pseudo amino acid composition to predict enzyme family classes: an approach with support vector machine based on discrete wavelet transform
-
PID: 19961429, COI: 1:CAS:528:DC%2BC3cXns12qtr0%3D
-
Qiu J-D, Huang J-H, Shi S-P, Liang R-P (2010) Using the concept of chou’s pseudo amino acid composition to predict enzyme family classes: an approach with support vector machine based on discrete wavelet transform. Protein Pept Lett 17:715–722
-
(2010)
Protein Pept Lett
, vol.17
, pp. 715-722
-
-
Qiu, J.-D.1
Huang, J.-H.2
Shi, S.-P.3
Liang, R.-P.4
-
31
-
-
84889080042
-
APSLAP: an adaptive boosting technique for predicting subcellular localization of apoptosis protein
-
PID: 23982307
-
Saravanan V, Lakshmi P (2013) APSLAP: an adaptive boosting technique for predicting subcellular localization of apoptosis protein. Acta Biotheor 61:481–497
-
(2013)
Acta Biotheor
, vol.61
, pp. 481-497
-
-
Saravanan, V.1
Lakshmi, P.2
-
32
-
-
26844455291
-
Predicting protein subnuclear location with optimized evidence-theoretic K-nearest classifier and pseudo amino acid composition
-
PID: 16213466, COI: 1:CAS:528:DC%2BD2MXhtFCjs7%2FI
-
Shen H-B, Chou K-C (2005) Predicting protein subnuclear location with optimized evidence-theoretic K-nearest classifier and pseudo amino acid composition. Biochem Biophys Res Commun 337:752–756
-
(2005)
Biochem Biophys Res Commun
, vol.337
, pp. 752-756
-
-
Shen, H.-B.1
Chou, K.-C.2
-
33
-
-
35348973511
-
EzyPred: a top–down approach for predicting enzyme functional classes and subclasses
-
PID: 17931599, COI: 1:CAS:528:DC%2BD2sXht1aktbvF
-
Shen H-B, Chou K-C (2007a) EzyPred: a top–down approach for predicting enzyme functional classes and subclasses. Biochem Biophys Res Commun 364:53–59
-
(2007)
Biochem Biophys Res Commun
, vol.364
, pp. 53-59
-
-
Shen, H.-B.1
Chou, K.-C.2
-
34
-
-
33847668306
-
Hum-mPLoc: an ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites
-
PID: 17346678, COI: 1:CAS:528:DC%2BD2sXivVahur0%3D
-
Shen H-B, Chou K-C (2007b) Hum-mPLoc: an ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites. Biochem Biophys Res Commun 355:1006–1011
-
(2007)
Biochem Biophys Res Commun
, vol.355
, pp. 1006-1011
-
-
Shen, H.-B.1
Chou, K.-C.2
-
35
-
-
84911004506
-
-
Smith C (2008) Subcellular targeting of proteins and drugs
-
Smith C (2008) Subcellular targeting of proteins and drugs. http://www.biocompare.com/Editorial-Articles/41619-Subcellular-Targeting-Of-Proteins-And-Drugs/
-
-
-
-
36
-
-
84861309357
-
A multi-label predictor for identifying the subcellular locations of singleplex and multiplex eukaryotic proteins
-
PID: 22629314, COI: 1:CAS:528:DC%2BC38XnvFGrtr0%3D
-
Wang X, Li G-Z (2012) A multi-label predictor for identifying the subcellular locations of singleplex and multiplex eukaryotic proteins. PLoS ONE 7:e36317
-
(2012)
PLoS ONE
, vol.7
, pp. e36317
-
-
Wang, X.1
Li, G.-Z.2
-
37
-
-
78650649704
-
Prediction of enzyme subfamily class via pseudo amino acid composition by incorporating the conjoint triad feature
-
PID: 20666729
-
Wang Y-C, Wang X-B, Yang Z-X, Deng N-Y (2010) Prediction of enzyme subfamily class via pseudo amino acid composition by incorporating the conjoint triad feature. Protein Pept Lett 17:1441–1449
-
(2010)
Protein Pept Lett
, vol.17
, pp. 1441-1449
-
-
Wang, Y.-C.1
Wang, X.-B.2
Yang, Z.-X.3
Deng, N.-Y.4
-
38
-
-
0001514262
-
Statistics of local complexity in amino acid sequences and sequence databases
-
COI: 1:CAS:528:DyaK2cXjtVCl
-
Wootton JC, Federhen S (1993) Statistics of local complexity in amino acid sequences and sequence databases. Comput Chem 17:149–163
-
(1993)
Comput Chem
, vol.17
, pp. 149-163
-
-
Wootton, J.C.1
Federhen, S.2
-
39
-
-
84858255890
-
ILoc-Gpos: a multi-layer classifier for predicting the subcellular localization of singleplex and multiplex gram-positive bacterial proteins
-
PID: 21919865, COI: 1:CAS:528:DC%2BC38XhvFKjsbg%3D
-
Wu Z-C, Xiao X, Chou K-C (2012) iLoc-Gpos: a multi-layer classifier for predicting the subcellular localization of singleplex and multiplex gram-positive bacterial proteins. Protein Pept Lett 19:4–14
-
(2012)
Protein Pept Lett
, vol.19
, pp. 4-14
-
-
Wu, Z.-C.1
Xiao, X.2
Chou, K.-C.3
-
40
-
-
15244350269
-
Using complexity measure factor to predict protein subcellular location
-
PID: 15611847, COI: 1:CAS:528:DC%2BD2MXhsVKqsro%3D
-
Xiao X, Shao S, Ding Y, Huang Z, Huang Y, Chou K-C (2005) Using complexity measure factor to predict protein subcellular location. Amino Acids 28:57–61
-
(2005)
Amino Acids
, vol.28
, pp. 57-61
-
-
Xiao, X.1
Shao, S.2
Ding, Y.3
Huang, Z.4
Huang, Y.5
Chou, K.-C.6
-
41
-
-
64749096548
-
GPCR-CA: a cellular automaton image approach for predicting G-protein–coupled receptor functional classes
-
PID: 19037861, COI: 1:CAS:528:DC%2BD1MXlsVSis70%3D
-
Xiao X, Wang P, Chou KC (2009) GPCR-CA: a cellular automaton image approach for predicting G-protein–coupled receptor functional classes. J Comput Chem 30:1414–1423
-
(2009)
J Comput Chem
, vol.30
, pp. 1414-1423
-
-
Xiao, X.1
Wang, P.2
Chou, K.C.3
-
42
-
-
84875074764
-
IAMP-2L: a two-level multi-label classifier for identifying antimicrobial peptides and their functional types
-
PID: 23395824, COI: 1:CAS:528:DC%2BC3sXlsFehtrs%3D
-
Xiao X, Wang P, Lin W-Z, Jia J-H, Chou K-C (2013) iAMP-2L: a two-level multi-label classifier for identifying antimicrobial peptides and their functional types. Anal Biochem 436:168–177
-
(2013)
Anal Biochem
, vol.436
, pp. 168-177
-
-
Xiao, X.1
Wang, P.2
Lin, W.-Z.3
Jia, J.-H.4
Chou, K.-C.5
-
44
-
-
33750528233
-
A novel method for apoptosis protein subcellular localization prediction combining encoding based on grouped weight and support vector machine
-
PID: 17069811, COI: 1:CAS:528:DC%2BD28XhtFOhsrzN
-
Zhang Z-H, Wang Z-H, Zhang Z-R, Wang Y-X (2006) A novel method for apoptosis protein subcellular localization prediction combining encoding based on grouped weight and support vector machine. FEBS Lett 580:6169–6174
-
(2006)
FEBS Lett
, vol.580
, pp. 6169-6174
-
-
Zhang, Z.-H.1
Wang, Z.-H.2
Zhang, Z.-R.3
Wang, Y.-X.4
-
45
-
-
0037233515
-
Subcellular location prediction of apoptosis proteins. Proteins: Structure
-
COI: 1:CAS:528:DC%2BD3sXlsVKmug%3D%3D
-
Zhou GP, Doctor K (2003) Subcellular location prediction of apoptosis proteins. Proteins: Structure. Funct Bioinform 50:44–48
-
(2003)
Funct Bioinform
, vol.50
, pp. 44-48
-
-
Zhou, G.P.1
Doctor, K.2
-
46
-
-
84884255470
-
An Approach for Identifying Cytokines Based on a Novel Ensemble Classifier
-
Zou Q, Wang Z, Guan X, Liu B, Wu Y, Lin Z (2013) An Approach for Identifying Cytokines Based on a Novel Ensemble Classifier. BioMed Res Int 2013:686090
-
(2013)
BioMed Res Int
-
-
Zou, Q.1
Wang, Z.2
Guan, X.3
Liu, B.4
Wu, Y.5
Lin, Z.6
|