Mzabimyces algeriensis gen. nov., sp. nov., a halophilic filamentous actinobacterium isolated from a Saharan soil, and proposal of Mzabimycetaceae fam. nov

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 106, Issue 5, 2014, Pages 1021-1030

  Saker, Rafika ^a   Bouras, Noureddine ^a   Zitouni, Abdelghani ^a   Ghoul, Mostefa ^b   Rohde, Manfred ^c   Schumann, Peter ^d   Spröer, Cathrin ^d   Sabaou, Nasserdine ^a   Klenk, Hans Peter ^d  

^a Ecole Normale Superieure de Kouba   (Algeria)

^b FERHAT ABBAS UNIVERSITY   (Algeria)

^c HELMHOLTZ CENTRE FOR INFECTION RESEARCH   (Germany)

^d LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

Author keywords

Halophilic actinobacteria; Mzabimyces algeriensis gen. nov., sp. nov; Mzabimycetaceae; Polyphasic taxonomy; Saharan soil

Indexed keywords

ARABINOSE; CARDIOLIPIN; DIAMINOPIMELIC ACID; FATTY ACID; GALACTOSE; GLYCOLIPID; LIPID; MENAQUINONE; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLINOSITOL; RNA 16S; BACTERIAL DNA; CARBOHYDRATE; FARNOQUINONE; PHOSPHOLIPID; RIBOSOME DNA;

ACTINOBACTERIA; ACTINOPOLYSPORA HALOPHILA; ACTINOPOLYSPORA RIGHENSIS; ACTINOPOLYSPORA XINJIANGENSIS; ALGERIA; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CHEMOTAXONOMY; CONTROLLED STUDY; DNA CONTENT; DNA DNA HYBRIDIZATION; GENE SEQUENCE; MORPHOLOGY; MYCELIUM; MZABIMYCES ALGERIENSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; SACCHAROPOLYSPORA; SACCHAROPOLYSPORA LACISALSI; SACCHAROPOLYSPORA QIJIAOJINGENSIS; SACCHAROPOLYSPORA RECTIVIRGULA; SEQUENCE ANALYSIS; SOIL; AFRICA; BACTERIUM IDENTIFICATION; CELL WALL; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; CYTOLOGY; CYTOSOL; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; SCANNING ELECTRON MICROSCOPY;

ACTINOBACTERIA;

ACTINOBACTERIA; AFRICA, NORTHERN; ALGERIA; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CARBOHYDRATES; CELL WALL; CLUSTER ANALYSIS; CYTOSOL; DIAMINOPIMELIC ACID; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; MICROSCOPY, ELECTRON, SCANNING; MOLECULAR SEQUENCE DATA; PHOSPHOLIPIDS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; VITAMIN K 2;

EID: 84910011783     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-014-0271-8     Document Type: Article

References (55)

1. Becker B, Lechevalier MP, Gordon RE, Lechevalier HA (1964) Rapid differentiation between Nocardia and Streptomyces by paper chromatography of whole-cell hydrolysates. J Appl Microbiol 12:421–423
2. Chun J, Bae KS, Moon EY, Jung SO, Lee HK, kim SJ (2000) Nocardiopsis kunsanensis sp. nov., a moderately halophilic actinomycete isolated from a saltern. Int J Syst Evol Microbiol 50:1909–1913
3. Coenye T, Falsen E, Vancanneyt M, Hoste B, Govan JR, Kersters K, Vandamme P (1999) Classification of Alcaligenes faecalis-like isolates from the environment and human clinical samples as Ralstonia gilardii sp. nov. Int J Syst Bacteriol 49:405–413
4. De Ley J, Cattoir H, Reynaerts A (1970) The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12:133–142
5. Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376
6. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791
7. Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406–416
8. Fitch WM (1977) On the problem of discovering the most parsimonious tree. Am Nat 111:223–257
9. Goodfellow M (1971) Numerical taxonomy of some nocardioform bacteria. J Gen Microbiol 69:33–90
10. Goodfellow M, Trujillo ME (2012) Family I. Actinopolysporaceae. In: Goodfellow M, Kämpfer P, Busse H-J, Trujillo ME, Suzuki K-I, Ludwig W, Whitman WB (eds) Bergey’s manual of systematic bacteriology, vol 5. Springer, New York, Dordrecht, Heidelberg, London, pp 163–170
11. Gordon RE, Barnett DA (1977) Resistance to rifampicin and lysozyme of strains of some species of Mycobacterium and Nocardia as a taxonomic tool. Int J Syst Bacteriol 27:176–178
12. Gordon RE, Barnett DA, Handerhan JE, Pang CHN (1974) Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24:54–63
13. Guan TW, Liu Y, Zhao K, Xia ZF, Zhang XP, Zhang LL (2010) Actinopolyspora xinjiangensis sp. nov., a novel extremely halophilic actinomycete isolated from a salt lake in Xinjiang, China. Antonie Van Leeuwenhoek 98:447–453
14. Guan TW, Wu N, Xia ZF, Ruan JS, Zhang XP, Huang Y, Zhang LL (2011) Saccharopolyspora lacisalsi sp. nov., a novel halophilic actinomycete isolated from a salt lake in Xinjiang, China. Extremophiles 15:373–378
15. Guan TW, Wei B, Zhang Y, Xia ZF, Che ZM, Chen XG, Zhang LL (2013a) Actinopolyspora lacussalsi sp. nov., an extremely halophilic actinomycete isolated from a salt lake. Int J Syst Evol Microbiol 63:3009–3013
16. Guan TW, Zhao HP, Che ZM, Zhang XP, Zhang LL (2013b) Actinopolyspora dayingensis sp. nov., a novel halophilic actinomycete isolated from a hypersaline lake. Antonie Van Leeuwenhoek 104:787–792
17. Hamedi J, Mohammadipanah F, Ventosa A (2013) Systematic and biotechnological aspects of halophilic and halotolerant actinomycetes. Antonie Van Leeuwenhoek 17:1–13
18. Hayakawa M, Nonomura H (1987) Humic acid-vitamin agar, a new medium for the selective isolation of soil actinomycetes. J Ferment Technol 65:501–509
19. Huss VAR, Festl H, Schleifer KH (1983) Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4:184–192
20. Kelly KL, Judd DB (1976) Color. Universal language and dictionary of names (National Bureau of Standards special publication 440). US Department of Commerce, Washington
21. Kim SB, Goodfellow M (2012) Genus XIV. Saccharopolyspora. In: Goodfellow M, Kämpfer P, Busse H-J, Trujillo ME, Suzuki K-I, Ludwig W, Whitman WB (eds) Bergey’s manual of systematic bacteriology, vol 5. Springer, New York, Dordrecht, Heidelberg, London, pp 1396–1414
22. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH, Yi H, Won S, Chun J (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716–721
23. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120
24. Kroppenstedt RM (1982) Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger as stationary phases. J Liq Chromatogr 5:2359–2367
25. Kroppenstedt RM (1985) Fatty acid and menaquinone analysis of actinomycetes and related organisms. In: Goodfellow M, Minnikin DE (eds) Chemical methods in bacterial systematics. Academic Press, London, pp 173–179
26. Kroppenstedt RM, Evtushenko LI (2006) The Prokaryotes, a handbook on biology of bacteria. In: Dworkin M, Falkow S, Rosenberg E, Schleifer KH, Stackebrandt E (eds) The family Nocardiopsaceae. Springer, New York, pp 754–795
27. Labeda DP, Goodfellow M (2012) Family I. Pseudonocardiaceae. In: Goodfellow M, Kämpfer P, Busse H-J, Trujillo ME, Suzuki K-I, Ludwig W, Whitman WB (eds) Bergey’s manual of systematic bacteriology, vol 5. Springer, New York, Dordrecht, Heidelberg, London, pp 1302–1445
28. Lechevalier MP, Lechevalier HA (1970) Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 34:435–444
29. Lechevalier MP, de Bièvre C, Lechevalier HA (1977) Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol 5:249–260
30. Mao J, Wang J, Dai H-Q, Zhang Z-D, Tang Q-Y, Ren B, Yang N, Goodfellow M, Zhang L-X, Liu Z-H (2011) Yuhushiella deserti gen. nov., sp. nov., a new member of the suborder Pseudonocardineae. Int J Syst Evol Microbiol 61:621–630
31. Marchal N, Bourdon JL, Richard CL (1987) Les milieux de culture pour l’isolement et l’identification biochimique des bactéries. Doin Press, Paris
32. Meklat A, Zitouni A, Mathieu F, Lebrihi A, Sabaou N (2011) Halophilic actinomycetes in Saharan soils of Algeria: isolation, taxonomy and antagonistic properties. Appl Environ Microbiol 77:6710–6714
33. Meklat A, Bouras N, Zitouni A, Mathieu F, Lebrihi A, Schumann P, Spröer C, Klenk HP, Sabaou N (2012) Actinopolyspora algeriensis sp. nov., a novel halophilic actinomycete isolated from a Saharan soil. Extremophiles 16:771–776
34. Meklat A, Bouras N, Zitouni A, Mathieu F, Lebrihi A, Schumann P, Spröer C, Klenk HP, Sabaou N (2013a) Actinopolyspora righensis sp. nov., a novel halophilic actinomycete isolated from Saharan soil in Algeria. Antonie Van Leeuwenhoek 104:301–307
35. Meklat A, Bouras N, Zitouni A, Mathieu F, Lebrihi A, Schumann P, Spröer C, Klenk HP, Sabaou N (2013b) Actinopolyspora saharensis sp. nov., a novel halophilic actinomycete isolated from a Saharan soil of Algeria. Antonie Van Leeuwenhoek 103:771–776
36. Meklat A, Bouras N, Zitouni A, Mathieu F, Lebrihi A, Schumann P, Spröer C, Klenk HP, Sabaou N (2013c) Actinopolysporamzabensis sp. nov., a halophilic actinomycete isolated from an Algerian Saharan soil. Int J Syst Evol Microbiol 63:3787–3792
37. Meklat A, Bouras N, Zitouni A, Sabaou N, Mathieu F, Schumann P, Spröer C, Klenk HP (2014) Saccharopolyspora ghardaiensis sp. nov., an extremely halophilic actinomycete isolated from Algerian Saharan soil. J Antibiotics 67:299–303
38. Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167
39. Minnikin DE, Patel PV, Alshamaony L, Goodfellow M (1977) Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27:104–117
40. Minnikin DE, Hutchinson IG, Caldicott AB, Goodfellow M (1980) Thin-layer chromatography of methanolysates of mycolic acid-containing bacteria. J Chromatogr A 188:221–233
41. Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233–241
42. Rainey FA, Ward-Rainey N, Kroppenstedt RM, Stackebrandt E (1996) The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46:1088–1092
43. Ray L, Suar M, Pattnaik AK, Raina V (2013) Streptomyceschilikensis sp. nov., a halophilic streptomycete isolated from brackish water sediment. Int J Syst Evol Microbiol 63:2757–2764
44. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
45. Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. Technical note 101. Microbial ID, Newark
46. Shirling EB, Gottlieb D (1966) Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:313–340
47. Stackebrandt E, Rainey FA, Ward-Rainey NL (1997) Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47:479–491
48. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739
49. Tang SK, Zhi XY, Wang Y, Wu JY, Lee JC, Kim CJ, Lou K, Xu LH, Li WJ (2009a) Haloactinobacterium album gen. nov., sp. nov., a halophilic actinobacterium, and proposal of Ruaniaceae fam. nov. Int J Syst Evol Microbiol 60:2113–2119
50. Tang SK, Wang Y, Wu JY, Cao LL, Lou K, Xu LH, Jiang CL, Li WJ (2009b) Saccharopolyspora qijiaojingensis sp. nov., a halophilic actinomycete isolated from a salt lake. Int J Syst Evol Microbiol 59:2166–2170
51. Tang SK, Zhi XY, Wang Y, Shi R, Lou K, Xu LH, Li WJ (2011a) Haloactinopolyspora alba gen. nov., sp. nov., a halophilic filamentous actinomycete isolated from a salt lake, with proposal of Jiangellaceae fam. nov. and Jiangellineae subord. nov. Int J Syst Evol Microbiol 61:194–200
52. Tang SK, Wang Y, Klenk HP, Shi R, Lou K, Zhang YJ, Chen C, Ruan JS, Li WJ (2011b) Actinopolyspora alba sp. nov. and Actinopolyspora erythraea sp. nov., isolated from a salt field, and reclassification of Actinopolyspora iraqiensis Ruan et al. 1994 as a heterotypic synonym of Saccharomonospora halophila. Int J Syst Evol Microbiol 61:1693–1698
53. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680
54. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray RGE, Stackebrandt E, Starr MP, Tru¨per HG (1987) International committee on systematic bacteriology. Report of the ad hoc committee on the reconciliation of approaches to bacterial systematic. Int J Syst Bacteriol 37:463–464
55. Zhi XY, Li WJ, Stackebrandt E (2009) An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa. Int J Syst Evol Microbiol 59:589–608