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Volumn 67, Issue 4, 2014, Pages 299-303

Saccharopolyspora ghardaiensis sp. nov., an extremely halophilic actinomycete isolated from Algerian Saharan soil

Author keywords

Gharda a; halophilic actinomycete; Saccharopolyspora ghardaiensis; Saharan soil; taxonomy

Indexed keywords

ARABINOSE; DIAMINOPIMELIC ACID; FATTY ACID; GALACTOSE; MENAQUINONE; PHOSPHATIDYLCHOLINE; RNA 16S;

EID: 84899705661     PISSN: 00218820     EISSN: 18811469     Source Type: Journal    
DOI: 10.1038/ja.2013.136     Document Type: Article
Times cited : (18)

References (40)
  • 1
    • 0016741538 scopus 로고
    • A novel actinomycete from sugarcane bagasse: Saccharopolyspora hirsuta gen et sp nov
    • Lacey, J. & Goodfellow, M. A novel actinomycete from sugarcane bagasse: Saccharopolyspora hirsuta gen. et sp. nov. J. Gen. Microbiol. 88, 75-85 (1975).
    • (1975) J. Gen. Microbiol. , vol.88 , pp. 75-85
    • Lacey, J.1    Goodfellow, M.2
  • 2
    • 0028220240 scopus 로고
    • A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genusPseudonocardia
    • Warwick, S. T., Bowen, T., McVeigh, H. & Embley, T. M. A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genusPseudonocardia. Int. J. Syst. Bacteriol. 44, 293-299 (1994).
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 293-299
    • Warwick, S.T.1    Bowen, T.2    McVeigh, H.3    Embley, T.M.4
  • 3
    • 70350697538 scopus 로고    scopus 로고
    • Saccharopolyspora halophila sp nov, a novel halophilic actinomycete isolated from a saline lake in China
    • Tang, S. K. et al. Saccharopolyspora halophila sp. nov., a novel halophilic actinomycete isolated from a saline lake in China. Int. J. Syst. Evol. Microbiol. 59, 555-558 (2009).
    • (2009) Int. J. Syst. Evol. Microbiol. , vol.59 , pp. 555-558
    • Tang, S.K.1
  • 4
    • 70350515952 scopus 로고    scopus 로고
    • Saccharopolyspora qijiaojingensis sp nov, halophilic actinomycete isolated from a salt lake
    • Tang, S. K. et al. Saccharopolyspora qijiaojingensis sp. nov., halophilic actinomycete isolated from a salt lake. Int. J. Syst. Evol. Microbiol. 59, 2166-2170 (2009).
    • (2009) Int. J. Syst. Evol. Microbiol. , vol.59 , pp. 2166-2170
    • Tang, S.K.1
  • 5
    • 79955521896 scopus 로고    scopus 로고
    • Saccharopolyspora lacisalsi sp nov, a novel halophilic actinomycete isolated from a salt lake in Xinjiang, China
    • Guan, T. W. et al. Saccharopolyspora lacisalsi sp. nov., a novel halophilic actinomycete isolated from a salt lake in Xinjiang, China. Extremophiles 15, 373-378 (2011).
    • (2011) Extremophiles , vol.15 , pp. 373-378
    • Guan, T.W.1
  • 6
    • 0002044672 scopus 로고
    • Chemical composition as a criterion in the classification of aerobic actinomycetes
    • Lechevalier, M. P. & Lechevalier, H. A. Chemical composition as a criterion in the classification of aerobic actinomycetes. Int. J. Syst. Bacteriol. 34, 435-444 (1970).
    • (1970) Int. J. Syst. Bacteriol. , vol.34 , pp. 435-444
    • Lechevalier, M.P.1    Lechevalier, H.A.2
  • 8
    • 0023126585 scopus 로고
    • Fatty acid composition in the classification of Saccharopolyspora hirsuta
    • Embley, T. M., Wait, R., Dobson, G. & Goodfellow, M. Fatty acid composition in the classification of Saccharopolyspora hirsuta. FEMS. Microbiol. Lett. 41, 131-135 (1987).
    • (1987) FEMS. Microbiol. Lett. , vol.41 , pp. 131-135
    • Embley, T.M.1    Wait, R.2    Dobson, G.3    Goodfellow, M.4
  • 9
    • 0005482101 scopus 로고
    • Saccharopolyspora gregorii and Saccharopolyspora hordei: Two new actinomycete species from fodder
    • Goodfellow, M., Lacey, J., Athalye, M., Embley, T. M. & Bowen, T. Saccharopolyspora gregorii and Saccharopolyspora hordei: two new actinomycete species from fodder. J. Gen. Microbiol. 135, 2125-2139 (1989).
    • (1989) J. Gen. Microbiol. , vol.135 , pp. 2125-2139
    • Goodfellow, M.1    Lacey, J.2    Athalye, M.3    Embley, T.M.4    Bowen, T.5
  • 10
    • 0027433706 scopus 로고
    • CL307-24, a new antibiotic complex from Saccharopolyspora aurantiaca sp nov II: Physico-chemical and biological properties
    • Fabre, B., Velours, J., Etienne, G., Legendre, F. & Tiraby, G. CL307-24, a new antibiotic complex from Saccharopolyspora aurantiaca sp. nov. II: Physico-chemical and biological properties. J. Antibiot. (Tokyo) 46, 1421-1427 (1993).
    • (1993) J. Antibiot. (Tokyo) , vol.46 , pp. 1421-1427
    • Fabre, B.1    Velours, J.2    Etienne, G.3    Legendre, F.4    Tiraby, G.5
  • 11
    • 79960195308 scopus 로고    scopus 로고
    • Actinopolyspora alba sp nov and Actinopolyspora erythraea sp nov, isolated from a salt field, and reclassification of Actinopolyspora iraqiensis Ruan et al. 1994 as a heterotypic synonym of Saccharomonospora halophila
    • Tang, S. K. et al. Actinopolyspora alba sp. nov. and Actinopolyspora erythraea sp. nov., isolated from a salt field, and reclassification of Actinopolyspora iraqiensis Ruan et al. 1994 as a heterotypic synonym of Saccharomonospora halophila. Int. J. Syst. Evol. Microbiol. 61, 1693-1698 (2011).
    • (2011) Int. J. Syst. Evol. Microbiol. , vol.61 , pp. 1693-1698
    • Tang, S.K.1
  • 12
    • 77949346583 scopus 로고    scopus 로고
    • Biosynthesis of Spinosyn in Saccharopolyspora spinosa: Synthesis of permethylated rhamnose and characterization of the functions of SpnH, SpnI, and SpnK
    • Kim, H. J. et al. Biosynthesis of Spinosyn in Saccharopolyspora spinosa: synthesis of permethylated rhamnose and characterization of the functions of SpnH, SpnI, and SpnK. J. Am. Chem. Soc. 132, 2901-2903 (2010).
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 2901-2903
    • Kim, H.J.1
  • 13
    • 0001633459 scopus 로고
    • Humic acid-vitamin agar, a new medium for the selective isolation of soil actinomycetes
    • Hayakawa, M. & Nonomura, H. Humic acid-vitamin agar, a new medium for the selective isolation of soil actinomycetes. J. Ferment. Technol. 65, 501-509 (1987).
    • (1987) J. Ferment. Technol. , vol.65 , pp. 501-509
    • Hayakawa, M.1    Nonomura, H.2
  • 14
    • 0033803806 scopus 로고    scopus 로고
    • Nocardiopsis kunsanensis sp nov, a moderately halophilic actinomy-cete isolated from a saltern
    • Chun, J. et al. Nocardiopsis kunsanensis sp. nov., a moderately halophilic actinomy-cete isolated from a saltern. Int. J. Syst. Evol. Microbiol. 50, 1909-1913 (2000).
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 1909-1913
    • Chun, J.1
  • 15
    • 0001023407 scopus 로고
    • Methods for characterization of Streptomyces species
    • Shirling, E. B. & Gottlieb, D. Methods for characterization of Streptomyces species. Int. J. Syst. Bacteriol. 16, 313-340 (1966).
    • (1966) Int. J. Syst. Bacteriol. , vol.16 , pp. 313-340
    • Shirling, E.B.1    Gottlieb, D.2
  • 16
    • 0003495369 scopus 로고
    • (National Bureau of Standards Special Publication 440) (US Department of Commerce Washington, DC, USA
    • Kelly, K. L. & Judd, D. B. Color. Universal Language and Dictionary of Names (National Bureau of Standards Special Publication 440) (US Department of Commerce, Washington, DC, USA, 1976).
    • (1976) Color. Universal Language and Dictionary of Names
    • Kelly, K.L.1    Judd, D.B.2
  • 18
    • 0015148670 scopus 로고
    • Numerical taxonomy of some nocardioform bacteria
    • Goodfellow, M. Numerical taxonomy of some nocardioform bacteria. J. Gen. Microbiol. 69, 33-90 (1971).
    • (1971) J. Gen. Microbiol. , vol.69 , pp. 33-90
    • Goodfellow, M.1
  • 19
    • 0017376391 scopus 로고
    • Resistance to rifampicin and lysozyme of strains of some species of Mycobacterium and Nocardia as a taxonomic tool
    • Gordon, R. E. & Barnett, D. A. Resistance to rifampicin and lysozyme of strains of some species of Mycobacterium and Nocardia as a taxonomic tool. Int. J. Syst. Bacteriol. 27, 176-178 (1977).
    • (1977) Int. J. Syst. Bacteriol. , vol.27 , pp. 176-178
    • Gordon, R.E.1    Barnett, D.A.2
  • 21
    • 78651158157 scopus 로고
    • Rapid differentiation between Nocardia and Streptomyces by paper chromatography of whole-cell hydro-lysates
    • Becker, B., Lechevalier, M. P., Gordon, R. E. & Lechevalier, H. A. Rapid differentiation between Nocardia and Streptomyces by paper chromatography of whole-cell hydro-lysates. Appl. Microbiol. 12, 421-423 (1964).
    • (1964) Appl. Microbiol. , vol.12 , pp. 421-423
    • Becker, B.1    Lechevalier, M.P.2    Gordon, R.E.3    Lechevalier, H.A.4
  • 22
    • 0017376921 scopus 로고
    • Polar lipid composition in the classification of Nocardia and related bacteria
    • Minnikin, D. E., Patel, P. V., Alshamaony, L. & Goodfellow, M. Polar lipid composition in the classification of Nocardia and related bacteria. Int. J. Syst. Bacteriol. 27, 104-117 (1977).
    • (1977) Int. J. Syst. Bacteriol. , vol.27 , pp. 104-117
    • Minnikin, D.E.1    Patel, P.V.2    Alshamaony, L.3    Goodfellow, M.4
  • 23
    • 0021182575 scopus 로고
    • An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids
    • Minnikin, D. E. et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J. Microbiol. Methods 2, 233-241 (1984).
    • (1984) J. Microbiol. Methods , vol.2 , pp. 233-241
    • Minnikin, D.E.1
  • 24
    • 0001440003 scopus 로고
    • Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger as stationary phases
    • Kroppenstedt, R. M. Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger as stationary phases. J. Liq. Chromatogr. 5, 2359-2367 (1982).
    • (1982) J. Liq. Chromatogr. , vol.5 , pp. 2359-2367
    • Kroppenstedt, R.M.1
  • 25
    • 0001579749 scopus 로고
    • Fatty acid and menaquinone analysis of actinomycetes and related organisms
    • eds Goodfellow, M. & Minnikin, D. E.), Academic Press, London, UK
    • Kroppenstedt, R. M. Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical Methods in Bacterial Systematics (eds Goodfellow, M. & Minnikin, D. E.) 173-179 (Academic Press, London, UK, 1985).
    • (1985) Chemical Methods in Bacterial Systematics , pp. 173-179
    • Kroppenstedt, R.M.1
  • 27
    • 0018834020 scopus 로고
    • Thin layer chromatography of methanolysates of mycolic acid-containing bacteria
    • Minnikin, D. E., Hutchinson, I. G., Caldicott, A. B. & Goodfellow, M. Thin layer chromatography of methanolysates of mycolic acid-containing bacteria. J. Chromatogr. A 188, 221-233 (1980).
    • (1980) J. Chromatogr. A , vol.188 , pp. 221-233
    • Minnikin, D.E.1    Hutchinson, I.G.2    Caldicott, A.B.3    Goodfellow, M.4
  • 29
    • 0029799968 scopus 로고    scopus 로고
    • The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: Proposal of Nocardiopsaceae fam nov
    • Rainey, F. A., Ward-Rainey, N., Kroppenstedt, R. M. & Stackebrandt, E. The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int. J. Syst. Bacteriol. 46, 1088-1092 (1996).
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 1088-1092
    • Rainey, F.A.1    Ward-Rainey, N.2    Kroppenstedt, R.M.3    Stackebrandt, E.4
  • 30
    • 0032902329 scopus 로고    scopus 로고
    • Classification of Alcaligenes faecalis-like isolates from the environment and human clinical samples as Ralstonia gilardii sp nov
    • Coenye, T. et al. Classification of Alcaligenes faecalis-like isolates from the environment and human clinical samples as Ralstonia gilardii sp. nov. Int. J. Syst. Bacteriol. 49, 405-413 (1999).
    • (1999) Int. J. Syst. Bacteriol. , vol.49 , pp. 405-413
    • Coenye, T.1
  • 31
    • 84863230041 scopus 로고    scopus 로고
    • Introducing EzTaxon-e: A prokaryotic 16S rRNA Gene sequence database with phylotypes that represent uncultured species
    • Kim, O. S. et al. Introducing EzTaxon-e: a prokaryotic 16S rRNA Gene sequence database with phylotypes that represent uncultured species. Int. J. Syst. Evol. Microbiol. 62, 716-721 (2012).
    • (2012) Int. J. Syst. Evol. Microbiol. , vol.62 , pp. 716-721
    • Kim, O.S.1
  • 32
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K. et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731-2739 (2011).
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1
  • 33
    • 36448991500 scopus 로고    scopus 로고
    • CLUSTAL W and CLUSTAL X version 2
    • Larkin, M. A. et al. CLUSTAL W and CLUSTAL X version 2. Bioinformatics 23, 2947-2948 (2007).
    • (2007) Bioinformatics , vol.23 , pp. 2947-2948
    • Larkin, M.A.1
  • 34
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425 (1987).
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 35
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • (ed Munro, H. N.), Academic Press, New York, NY, USA
    • Jukes, T. H. & Cantor, C. R. Evolution of protein molecules. In Mammalian Protein Metabolism (ed Munro, H. N.) 21-132 (Academic Press, New York, NY, USA, 1969).
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 36
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17, 368-376 (1981).
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 37
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111-120 (1980).
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 38
    • 0002918460 scopus 로고
    • On the problem of discovering the most parsimonious tree
    • Fitch, W. M. On the problem of discovering the most parsimonious tree. Am. Nat. 111, 223-257 (1977).
    • (1977) Am. Nat. , vol.111 , pp. 223-257
    • Fitch, W.M.1
  • 39
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791 (1985).
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 40
    • 0000198211 scopus 로고
    • Precise measurement of the G C content of deoxyribonucleic acid by high-performance liquid chromatography
    • Mesbah, M., Premachandran, U. & Whitman, W. B. Precise measurement of the G C content of deoxyribonucleic acid by high-performance liquid chromatography. Int. J. Syst. Bacteriol. 39, 159-167 (1989).
    • (1989) Int. J. Syst. Bacteriol. , vol.39 , pp. 159-167
    • Mesbah, M.1    Premachandran, U.2    Whitman, W.B.3


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