Molecular surveillance of non-polio enterovirus infections in patients with acute gastroenteritis in Western India: 2004-2009

Journal of Medical Virology

Volumn 87, Issue 1, 2015, Pages 154-161

  Patil, Pooja R ^a   Chitambar, Shobha D ^a   Gopalkrishna, V ^a  

^a NATIONAL INSTITUTE OF VIROLOGY   (India)

Author keywords

Acute gastroenteritis; Enteric viruses; Non polio enteroviruses; Prevalence; Serotypes

Indexed keywords

VIRUS RNA;

5' UNTRANSLATED REGION; ACUTE GASTROENTERITIS; ARTICLE; CASE CONTROL STUDY; CHILD; CONTROLLED STUDY; DISEASE ASSOCIATION; DISEASE SURVEILLANCE; ENTERIC VIRUS; ENTEROVIRUS; ENTEROVIRUS A; ENTEROVIRUS B; ENTEROVIRUS C; ENTEROVIRUS INFECTION; ENZYME LINKED IMMUNOSORBENT ASSAY; FEMALE; GENE SEQUENCE; GENOTYPE; HUMAN; INDIA; MAJOR CLINICAL STUDY; MALE; MIXED INFECTION; MOLECULAR EPIDEMIOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIRAL GASTROENTERITIS; VIRUS DETECTION; CLASSIFICATION; ENTEROVIRUS INFECTIONS; EPIDEMIOLOGICAL MONITORING; GASTROENTERITIS; GENETICS; GENOTYPING TECHNIQUE; INFANT; ISOLATION AND PURIFICATION; PRESCHOOL CHILD; PREVALENCE; VIROLOGY;

CASE-CONTROL STUDIES; CHILD; CHILD, PRESCHOOL; ENTEROVIRUS; ENTEROVIRUS INFECTIONS; EPIDEMIOLOGICAL MONITORING; FEMALE; GASTROENTERITIS; GENOTYPE; GENOTYPING TECHNIQUES; HUMANS; INDIA; INFANT; MALE; PREVALENCE;

EID: 84909991346     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.23992     Document Type: Article

References (33)

1. Adams MJ, King AM, Carstens EB. 2013. Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses. Arch Virol 158:2023-2030.
2. Blomqvist S, Paananen A, Savolainen-Kopra C, Hovi T, Roivainen M. 2008. Eight years of experience with molecular identification of human enteroviruses. J Clin Microbiol 46:2410-2413.
3. Casas I, Palacios GF, Trallero G, Cisterna D, Freire MC, Tenorio A. 2001. Molecular characterization of human enteroviruses in clinical samples: Comparison between VP2, VP1, and RNA polymerase regions using RT nested PCR assays and direct sequencing of products. J Med Virol 65:138-148.
4. Chan KP, Goh KT, Chong CY, Teo ES, Lau G, Ling AE. 2003. Epidemic hand, foot and mouth disease caused by human enterovirus 71, Singapore. Emerg Infect Dis 9:78-85.
5. Chhabra P, Dhongade RK, Kalrao VR, Bavdekar AR, Chitambar SD. 2009. Epidemiological, clinical and molecular features of norovirus infections in western India. J Med Virol 81:922-932.
6. Chitambar S, Gopalkrishna V, Chhabra P, Patil P, Verma H, Lahon A, Arora R, Tatte V, Ranshing S, Dhale G, Kolhapure R, Tikute S, Kulkarni J, Bhardwaj R, Akarte S, Pawar S. 2012. Existence of multiple enteric viruses in the outbreaks of gastroenteritis from Mumbai, western India. Int J Environ Res Public Health 9:895-915.
7. Chow BD, Ou Z, Esper FP. 2010b. Newly recognized bocaviruses (HBoV HBoV2) in children and adults with gastrointestinal illness in the United States. J Clin Virol 47:143-147.
8. Chow CM, Leung AKC, Hon KL. 2010a. Acute gastroenteritis: From guidelines to real life. Clin Exp Gastroenterol 3:97-112.
9. Clark B, McKendrick M. 2004. A review of viral gastroenteritis. Curr Opin Infect Dis 17:461-469.
10. Denno DM, Stapp JR, Boster DR, Qin X, Clausen CR, Del Beccaro KH, Swerdlow DL, Braden CR, Tarr PI. 2005. Etiology of diarrhea in pediatric outpatient settings. Pediatr Infect Dis J 24:142-148.
11. Kang G, Kelkar SD, Chitambar SD, Ray P, Naik T. 2005. Epidemiological profile of rotavirus infection in India: Challenges for the 21st century. J Infect Dis 192:S120-S126.
12. Kang G, Arora R, Chitambar SD, Deshpande J, Gupte MD, Kulkarni M, Naik TN, Mukherji D, Venkatasubramaniam S, Gentsch JR, Glass RI, Parashar UD. 2009. Multicenter, hospital-based surveillance of rotavirus disease and strains among Indian children aged 5 years. J Infect Dis 200:S147-S153.
13. Khamrin P, Okame M, Thongprachum A, Nantachit N, Nishimura S, Okitsu S, Maneekarn N, Ushijima H. 2011. A single tube-multiplex PCR for rapid detection in feces of 10 viruses causing diarrhea. J Virol Methods 173:390-393.
14. Mark AP, Raymond PR. 2007. Enteroviruses: Polioviruses, coxsackieviruses, echoviruses, and newer enteroviruses. In: David MK, Peter MH, editors. Fields virology. 5th edition. Philadelphia, PA: Lippincott Williams and Wilkins, pp 839-893.
15. Martín J, Dunn G, Hull R, Patel V, Minor PD. 2000. Evolution of the sabin strain of type 3 poliovirus in an immunodefficient patient during the entire 637 day period of virus excretion. J Virol 74:3001-3010.
16. Nix WA, Oberste MS, Pallansch MA. 2006. Sensitive, seminested PCR amplification of VP1 sequences for direct identification of all enterovirus serotypes from original clinical specimens. J Clin Microbiol 44(8):2698-2704.
17. Oberste MS, Maher K, Kilpatrick DR, Flemister MR, Brown BA, Pallansch MA. 1999. Typing of human enteroviruses by partial sequencing of VP1. J Clin Microbiol 37:1288-1293.
18. Oberste MS, William AN, Maher K, Pallansch MA. 2003. Improved molecular identification of enteroviruses by RT-PCR and amplicon sequencing. J Clin Virol 26:375-377.
19. Oberste MS, Feeroz MM, Maher K, Nix WA, Engel GA, Hasan KM, Begum S, Oh G, Chowdhury AH, Pallansch MA, Jones-Engel L. 2012. Characterizing the picornavirus landscape among synanthropic nonhuman primates in Bangladesh, 2007-2008. J Virol 87:558-571.
20. Pallansch MA, Roos RP. 2001. Enteroviruses:polioviruses, coxsackieviruses, echoviruses, and newer enteroviruses. In: Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE, Fields virology. 4th edition. Philadelphia, PA: Lippincott Williams and Wilkins, pp 723-775.
21. Pham NT, Trinh QD, Chan-It W, Khamrin P, Shimizu H, Okitsu S, Mizuguchi M, Ushijima H. 2010. A novel RT-multiplex PCR for detection of Aichi virus, Human Parechovirus, enterovirus, and human bocavirus among infants and children with acute gastroenteritis. J Virol Methods 169:193-197.
22. Phan TG, Nguyen TA, Shimizu H, Yagyu F, Okitsu S, Müller WE, Ushijima H. 2005. Identification of enteroviral infection among infant and children admitted to hospital with acute gastroenteritis in Ho Chi Minh city Vietnam. J Med Virol 77:257-264.
23. Rao CD, Yergolkar P, Shankarappa KS. 2012. Antigenic diversity of enteroviruses associated with nonpolio acute flaccid paralysis, India, 2007-2009. Emerg Infect Dis 18:1833-1840.
24. Rao CD, Babu AM, Raghavendr A, Dhananjaya D, Kumar S, Maiya PP. 2013. Non-polio enteroviruses and their association with acute diarrhea in children in India. Infect Genet Evol 17C:153-161.
25. Rongala L, Yergolkar P, Gopalkrishna V, Chitambar SD. 2013. Characterization of the non polio enterovirus infections associated with acute flaccid paralysis in South-Western India. PLoS ONE 8:e61650.
26. Ruuska T, Vesikari T. 1990. Rotavirus disease in Finnish Children: Use of numerical scores for clinical severity of diarrhoeal episodes. Scand J Infect Dis 22:259-267.
27. Sapkal GN, Bondre VP, Fulmali PV, Patil P, Gopalkrishna V, Dadhania V, Ayachit VM, Gangale D, Kushwaha KP, Rathi AK, Chitambar SD, Mishra AC, Gore MM. 2009. Enteroviruses in patients with acute encephalitis, Uttar Pradesh, India. Emerg Infect Dis 15:295-298.
28. Silva PA, Stark K, Mockenhaupt FP, Reither K, Weitzel T, Ignatius R, Saad E, Seidu-Korkor A, Bienzle U, Schreier E. 2008. Molecular characterization of enteric viral agents from children in northern region of Ghana. J Med Virol 80:1790-1798.
29. Simpson R, Aliyu S, Iturriza-Gómara M, Desselberger U, Gray J. 2003. Infantile viral gastroenteritis: On the way to closing the diagnostic gap. J Med Virol 70:258-262.
30. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEG A5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-2739.
31. Verma H, Chitambar SD, Gopalkrishna V. 2009. Identification and characterization of enteric adenoviruses in infants and children hospitalized for acute gastroenteritis. J Med Virol 81:60-64.
32. Verma H, Chitambar SD, Gopalkrishna V. 2010. Astrovirus associated acute gastroenteritis in western India: predominance of dual serotype strains. Infect Gene Evol 10:575-579.
33. Wilhelmi I, Roman E, Sánchez-Fauquier A. 2003. Viruses causing gastroenteritis. Clin Microbiol Infect 9:247-262.