Eight years of experience with molecular identification of human enteroviruses

Journal of Clinical Microbiology

Volumn 46, Issue 7, 2008, Pages 2410-2413

  Blomqvist, Soile ^a   Paananen, Anja ^a   Savolainen Kopra, Carita ^a   Hovi, Tapani ^a   Roivainen, Merja ^a  

^a NATIONAL PUBLIC HEALTH INSTITUTE   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

ANTISERUM; PROTEIN VP1; VIRUS RNA;

ANIMAL CELL; ARTICLE; ENTEROVIRUS; GENE SEQUENCE; HUMAN; HUMAN CELL; HUMAN ENTEROVIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEROTYPE; VIRUS IDENTIFICATION; VIRUS ISOLATION; VIRUS NEUTRALIZATION; VIRUS TYPING; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; ENTEROVIRUS INFECTION; GENETICS; GENOTYPE; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; SEQUENCE HOMOLOGY; VIROLOGY;

ENTEROVIRUS;

CLUSTER ANALYSIS; ENTEROVIRUS; ENTEROVIRUS INFECTIONS; ENVIRONMENTAL MICROBIOLOGY; GENOTYPE; HUMANS; MOLECULAR SEQUENCE DATA; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY;

EID: 49049109903     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.00313-08     Document Type: Article

References (18)

1. Arola, A., J. Santti, O. Ruuskanen, P. Halonen, and T. Hyypiä. 1996. Identification of enteroviruses in clinical specimens by competitive PCR followed by genetic typing using sequence analysis. J. Clin. Microbiol. 34:313-318.
2. Blomqvist, S., A. Skyttä, M. Roivainen, and T. Hovi. 1999. Rapid detection of human rhinoviruses in nasopharyngeal aspirates by a microwell reverse transcription-PCR-hybridization assay. J. Clin. Microbiol. 37:2813-2816.
3. Caro, V., S. Guillot, F. Delpeyroux, and R. Crainic. 2001. Molecular strategy for 'serotyping' of human enteroviruses. J. Gen. Virol. 82:79-91.
4. Casas, I., G. F. Palacios, G. Trallero, D. Cisterna, M. C. Freire, and A. Tenorio. 2001. Molecular characterization of human enteroviruses in clinical samples: comparison between VP2, VP1, and RNA polymerase regions using RT nested PCR assays and direct sequencing of products. J. Med. Virol. 65:138-148.
5. Hovi, T., M. Stenvik, and M. Rosenlew. 1996. Relative abundance of enterovirus serotypes in sewage differs from that in patients: clinical and epidemiological implications. Epidemiol. Infect. 116:91-97.
6. Ishiko, H., Y. Shimuda, M. Yonaha, O. Hashimoto, A. Hayashi, K. Sakae, and N. Takeda. 2002. Molecular diagnosis of human enteroviruses by phylogeny-based classification by use of the VP4 sequence. J. Infect. Dis. 185:744-754.
7. Jacques, J., H. Moret, D. Minette, N. Leveque, N. Jovenin, G. Deslee, F. Lebargy, J. Motte, and L. Andreoletti. 2008. Epidemiological, molecular and clinical features of enterovirus respiratory infections in French children between 1999 and 2005. J. Clin. Microbiol. 46:206-213.
8. Khetsuriani, N., A. LaMonte-Fowlkes, M. S. Oberste, and M. A. Pallansch. 2006. Enterovirus surveillance - United States. 1970-2005. Morb. Mortal. Wkly. Rep. 55(SS08):1-20.
9. Nasri, D., L. Bouslama, S. Omar, H. Saoudin, T. Bourlet, M. Aouni, B. Pozzetto, and S. Pillet. 2007. Typing of human enterovirus by partial sequencing of VP2. J. Clin. Microbiol. 45:2370-2379.
10. Norder, H., L. Bjerregaard, L. Magnius, B. Lina, M. Aymard, and J. J. Chomel. 2003. Sequencing of 'untypable' enteroviruses reveals two new types, EV-77 and EV-78, within human enterovirus type B and substitutions in the BC loop of the VP1 protein for known types. J. Gen. Virol. 84:827-836.
11. Oberste, M. S., K. Maher, D. R. Kilpatrick, and M. A. Pallansch. 1999. Molecular evolution of the human enteroviruses: correlation of serotype with VP1 sequence and application to picornavirus classification. J. Virol. 73:1941-1948.
12. Oberste, M. S., K. Maher, M. R. Flemister, G. Marchetti, D. R. Kilpatrick, and M. A. Pallansch. 2000. Comparison of classic and molecular approaches for the identification of untypeable enteroviruses. J. Clin. Microbiol. 38:1170-1174.
13. Oberste, M. S., W. A. Nix, K. Maher, and M. A. Pallansch. 2003. Improved molecular identification of enteroviruses by RT-PCR and amplicon sequencing. J. Clin. Virol. 26:375-377.
14. Palacios, G., I. Casas, A. Tenorio, and C. Freire. 2002. Molecular identification of enterovirus by analyzing a partial VP1 genomic region with different methods. J. Clin. Microbiol. 40:182-192.
15. Simmonds, P., and J. Welch. 2006. Frequency and dynamics of recombination within different species of human enteroviruses. J. Virol. 80:483-493.
16. Smura, T. P., N. Junttila, S. Blomqvist, H. Norder, S. Kaijalainen, A. Paananen, L. O. Magnius, T. Hovi, and M. Roivainen. 2007. Enterovirus 94, a proposed new serotype in human enterovirus species D. J. Gen. Virol. 88:849-858.
17. Smura, T., S. Blomqvist, A. Paananen, T. Vuorinen, Z. Sobotova, V. Bubovica, O. Ivanova, T. Hovi, and M. Roivainen. 2007. Enterovirus surveillance reveals proposed new serotypes and provides new insight into enterovirus 5′-untranslated region evolution. J. Gen. Virol. 88:2520-2526.
18. Stanway, G., F. Brown, P. Christian, T. Hovi, T. Hyypiä, A. M. Q. King, N. J. Knowles, S. M. Lemon, P. D. Minor, M. A. Pallansch, A. C. Palmenberg, and T. Skern. 2005. Family Picornaviridae, p. 757-778. In C. M. Fauquet, M. A. Mayo, J. Maniloff, U. Desselberger, and L. A. Ball (ed.), Virus taxonomy: eighth report of the International Committee on Taxonomy of Viruses. Elsevier/Academic Press, London, United Kingdom.