Spectral properties and thermal stability of AS1411 G-quadruplex

International Journal of Biological Macromolecules

Volumn 72, Issue , 2015, Pages 806-811

  Bagheri, Zeinab ^a   Ranjbar, Bijan ^a   Latifi, Hamid ^b   Zibaii, Mohammad Ismail ^b   Moghadam, Tahereh Tohidi ^a   Azizi, Azade ^a  

^a TARBIAT MODARES UNIVERSITY   (Iran)

^b SHAHID BEHESHTI UNIVERSITY   (Iran)

Author keywords

AS1411 aptamer; Circular dichroism; G quadruplex; Thermal stability

Indexed keywords

DEOXYRIBOZYME; FLUORESCENT DYE; GUANINE QUADRUPLEX; GUANINE QUADRUPLEX AS1411; LEAD; POTASSIUM ION; SINGLE STRANDED DNA; UNCLASSIFIED DRUG; DNA; OLIGONUCLEOTIDE;

ARTICLE; BASE PAIRING; CIRCULAR DICHROISM; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; DNA CONFORMATION; DNA PROBE; DNA STRUCTURE; ENZYME ACTIVITY; FLUORESCENCE SPECTROSCOPY; INTERCALATION COMPLEX; MOLECULAR CROWDING; REAL TIME POLYMERASE CHAIN REACTION; SPECTROSCOPY; STRUCTURE ANALYSIS; THERMOSTABILITY; ULTRAVIOLET SPECTROSCOPY; CHEMISTRY; METABOLISM; THERMODYNAMICS;

CIRCULAR DICHROISM; DNA; DNA, CATALYTIC; G-QUADRUPLEXES; OLIGONUCLEOTIDES; THERMODYNAMICS;

EID: 84908691403     PISSN: 01418130     EISSN: 18790003     Source Type: Journal    
DOI: 10.1016/j.ijbiomac.2014.09.016     Document Type: Article

References (43)

1. Gellert M., Lipsett M.N., Davies D.R. Proc. Natl. Acad. Sci. U. S. A. 1962, 48:2013.
2. Neidle S., Balasubramanian S. Quadruplex Nucleic Acids 2006, R. Soc. Chem.
3. Burge S., Parkinson G.N., Hazel P., Todd A.K., Neidle S. Nucleic Acids Res. 2006, 34:5402-5415.
4. Lech C.J., Heddi B., Phan A.T. Nucleic Acids Res. 2013, 41:2034-2046.
5. Sannohe Y., Sugiyama H. Curr. Protoc. Nucleic Acid Chem. 2010, 1-17.
6. Lu N., Shao C., Deng Z. Analyst 2009, 134:1822-1825.
7. Kosman J., Juskowiak B. Anal. Chim. Acta 2011, 707:7-17.
8. Campbell N.H., Neidle S. Interplay Between Metal Ions and Nucleic Acids 2012, 119-134. Springer.
9. Kotch F.W., Fettinger J.C., Davis J.T. Org. Lett. 2000, 2:3277-3280.
10. Zhan S., Wu Y., Liu L., Xing H., He L., Zhan X., et al. RSC Adv. 2013, 3:16962-16966.
11. Liu W., Zhu H., Zheng B., Cheng S., Fu Y., Li W., et al. Nucleic Acids Res. 2012, 40:4229-4236.
12. Petraccone L., Pagano B., Giancola C. Methods 2012, 57:76-83.
13. Petraccone L., Malafronte A., Amato J., Giancola C. J. Phys. Chem. B. 2012, 116:2294-2305.
14. Zhou J., Wei C., Jia G., Wang X., Tang Q., Feng Z., et al. Biophys. Chem. 2008, 136:124-127.
15. Miyoshi D., Fujimoto T., Sugimoto N. Quadruplex Nucleic Acids 2013, 87-110. Springer.
16. Bates P.J., Laber D.A., Miller D.M., Thomas S.D., Trent J.O. Exp. Mol. Pathol. 2009, 86:151-164.
17. Aravind A., Jeyamohan P., Nair R., Veeranarayanan S., Nagaoka Y., Yoshida Y., et al. Biotechnol. Bioeng. 2012, 109:2920-2931.
18. Ireson C.R., Kelland L.R. Mol. Cancer Ther. 2006, 5:2957-2962.
19. Cong R., Das S., Bouvet P. The Nucleolus 2011, 185-212. Springer.
20. Soundararajan S., Chen W., Spicer E.K., Courtenay-Luck N., Fernandes D.J. Cancer Res. 2008, 68:2358-2365.
21. Zhang Y., Li B. Biosens. Bioelectron. 2011, 27:137-140.
22. Zhang X.-B., Kong R.-M., Lu Y. Annu. Rev. Anal. Chem. (Palo Alto, CA) 2011, 4:105.
23. Su H., Qiao F., Duan R., Chen L., Ai S. Biosens. Bioelectron. 2013, 43:268-273.
24. Ai J., Guo W., Li B., Li T., Li D., Wang E. Talanta 2012, 88:450-455.
25. Dailey M.M., Miller M.C., Bates P.J., Lane A.N., Trent J.O. Nucleic Acids Res. 2010, 38:4877-4888.
26. Miller M.C., Trent J.O. Curr. Protoc. Nucleic Acid Chem. 2011, Chapter 17, Unit17.3.
27. Ai J., Xu Y., Lou B., Li D., Wang E. Talanta 2013.
28. Li C., Liu K., Lin Y., Chang H. Anal. Chim. 2011, 83:2013-2018.
29. Li T., Dong S., Wang E. Chem. Asian J. 2009, 918-922.
30. Shum K. A Comparative Study of G-Quadruplex Aptamers Against Multiple Protein Targets 2011, University of Hong Kong.
31. Origin (OriginLab, Northampton, MA), (n.d.).
32. Dragan A.I., Casas-Finet J.R., Bishop E.S., Strouse R.J., Schenerman M.A., Geddes C.D. Biophys. J. 2010, 99:3010-3019.
33. Kypr J., Kejnovská I., Renčiuk D., Vorlíčková M. Nucleic Acids Res. 2009, 37:1713-1725.
34. Vorlíčková M., Kejnovská I., Sagi J., Renčiuk D., Bednárová K., Motlová J., et al. Methods 2012, 57:64-75.
35. Ranjbar B., Gill P. Chem. Biol. Drug Des. 2009, 74:101-120.
36. Malgowska M., Gudanis D., Teubert A., Dominiak G.Z., Gdaniec Z. Biotechnol. J. Biotechnol. Comput. Biol. Bionanotechnol. 2012, 93.
37. Olsen C.M., Marky L.A. G-Quadruplex DNA 2010, 147-158. Springer.
38. Mergny J.-L., Phan A.-T., Lacroix L. FEBS Lett. 1998, 435:74-78.
39. Karsisiotis A.I., Hessari N.M., Novellino E., Spada G.P., Randazzo A., Webba da Silva M. Angew. Chem. Int. Ed. Engl. 2011, 50:10645-10648.
40. Mergny J.-L., Li J., Lacroix L., Amrane S., Chaires J.B. Nucleic Acids Res. 2005, 33:e138.
41. Cosa G., Focsaneanu K.-S., McLean J.R.N., McNamee J.P., Scaiano J.C. Photochem. Photobiol. 2001, 73:585-599.
42. Schweitzer C., Scaiano J.C. Phys. Chem. Chem. Phys. 2003, 4911-4917.
43. Dorak M.T. Real-time PCR 2007, Taylor & Francis.