Multiple species of wild tree peonies gave rise to the ‘king of flowers’, Paeonia suffruticosa andrews

Proceedings of the Royal Society B: Biological Sciences

Volumn 281, Issue 1797, 2014, Pages

  Zhou, Shi Liang ^a   Zou, Xin Hui ^a   Zhou, Zhi Qin ^b   Liu, Jing ^a   Xu, Chao ^a   Yu, Jing ^a   Wang, Qiang ^a   Zhang, Da Ming ^a   Wang, Xiao Quan ^a   Ge, Song ^a   Sang, Tao ^a   Pan, Kai Yu ^a   Hong, De Yuan ^a  

^a INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

^b SOUTHWEST UNIVERSITY   (China)

Author keywords

Conservation; Hybridization; Paeonia; RNA seq; Species tree

Indexed keywords

CHLOROPLAST; CONSERVATION GENETICS; CULTIVAR; DICOTYLEDON; EXTINCTION RISK; GENETIC MARKER; HYBRIDIZATION; MORPHOLOGY; PHYLOGENETICS; PHYLOGENY; RNA; WILD POPULATION;

CHINA;

PAEONIA; PAEONIA SUFFRUTICOSA;

CHLOROPLAST GENE; EVOLUTION; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PAEONIA; PHYLOGENY; PHYSIOLOGY; SEQUENCE ALIGNMENT; SPECIES DIFFERENTIATION;

BASE SEQUENCE; BIOLOGICAL EVOLUTION; GENES, CHLOROPLAST; GENETIC SPECIATION; MOLECULAR SEQUENCE DATA; PAEONIA; PHYLOGENY; SEQUENCE ALIGNMENT;

EID: 84908666005     PISSN: 09628452     EISSN: 14712954     Source Type: Journal    
DOI: 10.1098/rspb.2014.1687     Document Type: Article

References (36)

1. Barrett CB, Travis AJ, Dasgupta P. 2011 On biodiversity conservation and poverty traps. Proc. Natl Acad. Sci. USA 108, 13907-13912. (doi:10.1073/pnas.1011521108)
2. Cardinale BJ et al. 2012 Biodiversity loss and its impact on humanity. Nature 486, 59-67. (doi:10.1038/nature11148)
3. Diamond J. 2002 Evolution, consequences and future of plant and animal domestication. Nature 418, 700-707. (doi:10.1038/nature01019)
4. Kareiva P, Watts S, McDonald R, Boucher T. 2007 Domesticated nature: shaping landscapes and ecosystems for human welfare. Science 316, 1866-1869. (doi:10.1126/science.1140170)
5. Ford-Lloyd BV et al. 2011 Crop wild relatives— undervalued, underutilized and under threat? Bioscience 61, 559-565. (doi:10.1525/bio.2011.61.7.10)
6. Lobell DB, Burke MB, Tebaldi C, Mastrandrea MD, Falcon WP, Naylor RL. 2008 Prioritizing climate change adaptation needs for food security in 2030. Science 319, 607-610. (doi:10.1126/science.1152339)
7. Lan B, Li J, Duan Q. 2002 An encyclopedia of the tree peonies in China. Beijing, China: China Science and Technology Press.
8. Chen P. 1999 A restudy on varieties of peony and their number in Song Dynasty China. Stud. History Nat. Sci. 18, 326–336.
9. Hong DY. 2010 Peonies of the world: taxonomy and phytogeography. London, UK: Royal Botanic Gardens, Kew.
10. Hong DY. 2011 Peonies of the world: polymorphism and diversity. London, UK: Royal Botanic Gardens, Kew.
11. Haw S. 2001 Tree peonies: a review of their history and taxonomy. New Plantsman 8, 156–171.
12. Haw S, Lauener L. 1990 A review of the infraspecific taxa of Paeonia suffruticosa Andrews. Edinb. J. Bot. 47, 273-281. (doi:10.1017y/S0960428600003413)
13. Hong DY, Pan KY. 1999 Taxonomical history and revision of Paeonia sect. Moutan (Paeoniaceae). Acta Phytotaxonomica Sin. 37, 351–368.
14. Hong DY, Pan KY. 1999 A revision of the Paeonia suffruticosa complex (Paeoniaceae). Nord. J. Bot. 19, 289-299. (doi:10.1111/j.1756-1051.1999.tb01115.x)
15. Yuan JH, Cheng FY, Zhou SL. 2010 Hybrid origin of Paeonia x yananensis revealed by microsatellite markers, chloroplast gene sequences, and morphological characteristics. Int. J. Plant Sci. 171, 409-420. (doi:10.1086/651228)
16. Yuan JH, Cornille A, Giraud T, Cheng FY, Hu YH. 2013 Independent domestications of cultivated tree peonies from different wild peony species. Mol. Ecol. 23, 82-95. (doi 10.1111/mec.12567)
17. Wang JX. 2010 A study of evolutionary biology on Paeonia subsect. Vaginatae (Paeoniaceae) and origin of traditional cultivars of tree peony. Beijing, China: Institute of Botany, the Chinese Academy of Sciences.
18. Zhang JM. 2010 Population genetics of Paeonia sect. Moutan subsect. Delavayanae (Paeoniaceae). Beijing, China: Institute of Botany, the Chinese Academy of Sciences.
19. Dong W, Liu J, Yu J, Wang L, Zhou S. 2012 Highly variable chloroplast markers for evaluating plant phylogeny at low taxonomic levels and for DNA barcoding. PLoS ONE 7, e35071. (doi:10.1371/ journal.pone.0035071)
20. Librado P, Rozas J. 2009 DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25, 1451-1452. (doi:10.1093/bioinformatics/btp187)
21. Yu J, Xue JH, Zhou SL. 2011 New universal matK primers for DNA barcoding angiosperms. J. Syst. Evol. 49, 176-181. (doi:10.1111/j.1759-6831.2011.00134.x)
22. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997 The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882. (doi:10.1093/nar/25.24.4876)
23. Martin DP, Lemey P, Lott M, Moulton V, Posada D, Lefeuvre P. 2010 RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26, 2462–2463. (doi:10.1093/bioinformatics/btq467)
24. Nylander J. 2004 MrModeltest v2. Program distributed by the author. Uppsala, Sweden: Evolutionary Biology Centre, Uppsala University.
25. Swofford D. 2003 PAUP*: phylogenetic analysis using parsimony (*and Other Methods), v. 4. Sunderland, MA: Sinauer Associates.
26. Guindon S, Gascuel O. 2003 A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696–704. (doi:10.1080/10635150390235520)
27. Ronquist F, Huelsenbeck JP. 2003 MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574. (doi:10.1093/bioinformatics/btg180)
28. Drummond AJ, Rambaut A. 2007 BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7, 214. (doi:10.1186/1471-2148-7-214)
29. Heled J, Drummond AJ. 2010 Bayesian inference of species trees from multilocus data. Mol. Biol. Evol. 27, 570-580. (doi:10.1093/molbev/msp274)
30. Hong DY. 2011 Paeonia rotundiloba (D. Y. Hong) D. Y. Hong: a new status in tree peonies (Paeoniaceae). J. Syst. Evol. 49, 464-467. (doi:10.1111/j.1759-6831.2011.00149.x)
31. Ferguson D, Sang T. 2001 Speciation through homoploid hybridization between allotetraploids in peonies (Paeonia). Proc. Natl Acad. Sci. USA 98, 3915-3919. (doi:10.1073/pnas.061288698)
32. Sang T, Crawford D, Stuessy T. 1997 Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae). Am. J. Bot. 84, 1120-1136. (doi:10.2307/2446155)
33. Sang T, Crawford DJ, Stuessy TF. 1995 Documentation of reticulate evolution in peonies (Peonia) using internal transcribed spacer sequences of nuclear ribosomal DNA: implications for biogeography and concerted evolution. Proc. Natl Acad. Sci. USA 92, 6813-6817. (doi:10.1073/pnas.92.15.6813)
34. Sang T, Zhang DM. 1999 Reconstructing hybrid speciation using sequences of low copy nuclear genes: hybrid origins of five Paeonia species based on Adh gene phylogenies. Syst. Bot. 24, 148–163. (doi:10.2307/2419546)
35. Hughes CE, Govindarajulu R, Robertson A, Filer DL, Harris SA, Bailey CD. 2007 Serendipitous backyard hybridization and the origin of crops. Proc. Natl Acad. Sci. USA 104, 14389-14394. (doi:10.1073/pnas.0702193104)
36. Dawson TP, Jackson ST, House JI, Prentice IC, Mace GM. 2011 Beyond predictions: biodiversity conservation in a changing climate. Science 332, 53-58. (doi:10.1126/science.1200303)