메뉴 건너뛰기




Volumn 3, Issue , 2015, Pages

Biological network analysis with CentiScaPe: Centralities and experimental dataset integration

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; ARTICLE; BIOINFORMATICS; COMPUTER PROGRAM; DATA ANALYSIS; INFORMATION PROCESSING; INTERNET; PREDICTION; PROTEIN EXPRESSION; PROTEIN PHOSPHORYLATION;

EID: 84908616695     PISSN: 20461402     EISSN: 1759796X     Source Type: Journal    
DOI: 10.12688/f1000research.4477.2     Document Type: Article
Times cited : (99)

References (19)
  • 1
    • 84921882515 scopus 로고    scopus 로고
    • Scale-Free Networks: Complex Webs in Nature and Technology (Oxford Finance)
    • Oxford University Press, USA.
    • Caldarelli G: Scale-Free Networks: Complex Webs in Nature and Technology (Oxford Finance). Oxford University Press, USA.2007. 10.1093/acprof:oso/9780199211517.001.0001
    • (2007)
    • Caldarelli, G.1
  • 2
    • 0034609791 scopus 로고    scopus 로고
    • The large-scale organization of metabolic networks
    • 11034217
    • Jeong H Tombor B Albert R: The large-scale organization of metabolic networks. Nature. 2000;407(6804):651-654. 11034217 10.1038/35036627
    • (2000) Nature , vol.407 , Issue.6804 , pp. 651-654
    • Jeong, H.1    Tombor, B.2    Albert, R.3
  • 3
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: understanding the cell's functional organization
    • 14735121
    • Barabási AL Oltvai ZN: Network biology: understanding the cell's functional organization. Nat Rev Genet. 2004;5(2):101-113. 14735121 10.1038/nrg1272
    • (2004) Nat Rev Genet , vol.5 , Issue.2 , pp. 101-113
    • Barabási, A.L.1    Oltvai, Z.N.2
  • 4
    • 0035826155 scopus 로고    scopus 로고
    • Exploring complex networks
    • 11258382
    • Strogatz SH: Exploring complex networks. Nature. 2001;410(6825):268-276. 11258382 10.1038/35065725
    • (2001) Nature , vol.410 , Issue.6825 , pp. 268-276
    • Strogatz, S.H.1
  • 5
    • 33746685687 scopus 로고    scopus 로고
    • Centrality indices
    • In Ulrik Brandes and Thomas Erlebach, editors, Network Analysis: Methodological Foundations, Springer
    • Koschützki D Lehmann KA Peeters L: Centrality indices. In Ulrik Brandes and Thomas Erlebach, editors, Network Analysis: Methodological Foundations, Springer.2005;16-61. 10.1007/978-3-540-31955-9_3
    • (2005) , pp. 16-61
    • Koschützki, D.1    Lehmann, K.A.2    Peeters, L.3
  • 6
    • 38449101120 scopus 로고    scopus 로고
    • Integration of biological networks and gene expression data using Cytoscape
    • 17947979, 3685583
    • Cline MS Smoot M Cerami E: Integration of biological networks and gene expression data using Cytoscape. Nat Protoc. 2007;2(10):2366-2382. 17947979 10.1038/nprot.2007.324 3685583
    • (2007) Nat Protoc , vol.2 , Issue.10 , pp. 2366-2382
    • Cline, M.S.1    Smoot, M.2    Cerami, E.3
  • 7
    • 84869054051 scopus 로고    scopus 로고
    • A travel guide to Cytoscape plugins
    • 23132118, 3649846
    • Saito R Smoot ME Ono K: A travel guide to Cytoscape plugins. Nat Methods. 2012;9(11):1069-76. 23132118 10.1038/nmeth.2212 3649846
    • (2012) Nat Methods , vol.9 , Issue.11 , pp. 1069-1076
    • Saito, R.1    Smoot, M.E.2    Ono, K.3
  • 8
    • 70350664654 scopus 로고    scopus 로고
    • Analyzing biological network parameters with CentiScaPe
    • 19729372, 2781755
    • Scardoni G Petterlini M Laudanna C: Analyzing biological network parameters with CentiScaPe. Bioinformatics. 2009;25(21):2857-2859. 19729372 10.1093/bioinformatics/btp517 2781755
    • (2009) Bioinformatics , vol.25 , Issue.21 , pp. 2857-2859
    • Scardoni, G.1    Petterlini, M.2    Laudanna, C.3
  • 9
    • 84892844117 scopus 로고    scopus 로고
    • An approach to investigate intracellular protein network responses
    • 24359296, 3939825
    • Currie HN Vrana JA Han AA: An approach to investigate intracellular protein network responses. Chem Res Toxicol. 2014;27(1):17-26. 24359296 10.1021/tx400247g 3939825
    • (2014) Chem Res Toxicol , vol.27 , Issue.1 , pp. 17-26
    • Currie, H.N.1    Vrana, J.A.2    Han, A.A.3
  • 10
    • 84943173036 scopus 로고    scopus 로고
    • F1000Research-centiscapepublic-archive
    • Data Source
    • Scardoni G Tosadori G Faizan M: F1000Research-centiscapepublic-archive. Zenodo. 2014. Data Source
    • (2014) Zenodo
    • Scardoni, G.1    Tosadori, G.2    Faizan, M.3
  • 11
    • 33745012299 scopus 로고    scopus 로고
    • Modularity and community structure in networks
    • 16723398, 1482622
    • Newman ME: Modularity and community structure in networks. Proc Natl Acad Sci U S A. 2006;103(23):8577-8582. 16723398 10.1073/pnas.0601602103 1482622
    • (2006) Proc Natl Acad Sci U S A , vol.103 , Issue.23 , pp. 8577-8582
    • Newman, M.E.1
  • 12
    • 0033555859 scopus 로고    scopus 로고
    • Emergent properties of networks of biological signaling pathways
    • 9888852
    • Bhalla US Iyengar R: Emergent properties of networks of biological signaling pathways. Science. 1999;283(5400):381-7. 9888852 10.1126/science.283.5400.381
    • (1999) Science , vol.283 , Issue.5400 , pp. 381-387
    • Bhalla, U.S.1    Iyengar, R.2
  • 13
    • 84892842364 scopus 로고    scopus 로고
    • Centralities based analysis of complex networks
    • New Frontiers in Graph Theory, In Yagang Zhang, editor
    • Scardoni G Laudanna C: Centralities based analysis of complex networks. In Yagang Zhang, editor, New Frontiers in Graph Theory. InTech.2012. 10.5772/35846
    • (2012)
    • Scardoni, G.1    Laudanna, C.2
  • 14
    • 34147120474 scopus 로고
    • A note on two problems in connexion with graphs
    • Dijkstra EW: A note on two problems in connexion with graphs. Numerische Mathematik. 1959;1(1):269-271. 10.1007/BF01386390
    • (1959) Numerische Mathematik , vol.1 , Issue.1 , pp. 269-271
    • Dijkstra, E.W.1
  • 15
    • 84896745959 scopus 로고    scopus 로고
    • Node interference and robustness: performing virtual knock-out experiments on biological networks: the case of leukocyte integrin activation network
    • 24586448, 3930642
    • Scardoni G Montresor A Tosadori G: Node interference and robustness: performing virtual knock-out experiments on biological networks: the case of leukocyte integrin activation network. PLoS One. 2014;9(2):e88938. 24586448 10.1371/journal.pone.0088938 3930642
    • (2014) PLoS One , vol.9 , Issue.2 , pp. e88938
    • Scardoni, G.1    Montresor, A.2    Tosadori, G.3
  • 16
    • 27644483321 scopus 로고    scopus 로고
    • JFreeChart
    • Reference Source
    • Gilbert D: JFreeChart. Reference Source
    • Gilbert, D.1
  • 17
    • 79955879494 scopus 로고    scopus 로고
    • Controllability of complex networks
    • Liu YY Slotine JJ Barabási AL: Controllability of complex networks. Nature. 2011;473(7346):167-173. 10.1038/nature10011
    • (2011) Nature , vol.473 , Issue.7346 , pp. 167-173
    • Liu, Y.Y.1    Slotine, J.J.2    Barabási, A.L.3
  • 18
    • 78049413383 scopus 로고    scopus 로고
    • A decade of systems biology
    • 20604711, 3371392
    • Chuang HY Hofree M Ideker T: A decade of systems biology. Annu Rev Cell Dev Biol. 2010;26(1):721-744. 20604711 10.1146/annurev-cellbio-100109-104122 3371392
    • (2010) Annu Rev Cell Dev Biol , vol.26 , Issue.1 , pp. 721-744
    • Chuang, H.Y.1    Hofree, M.2    Ideker, T.3
  • 19
    • 0041834164 scopus 로고
    • Design of topological indices. Part 4. Reciprocal distance matrix, related local vertex invariants and topological indices
    • Ivanciuc O Balaban TS Balaban AT: Design of topological indices. Part 4. Reciprocal distance matrix, related local vertex invariants and topological indices. J Math Chem. 1993;12(1):309-318. 10.1007/BF01164642
    • (1993) J Math Chem , vol.12 , Issue.1 , pp. 309-318
    • Ivanciuc, O.1    Balaban, T.S.2    Balaban, A.T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.