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Volumn 54, Issue , 2014, Pages 24-31

Network-based approach reveals Y chromosome influences prostate cancer susceptibility

Author keywords

Co expression networks; Expression data; Prostate cancer; Reverse engineering approach; Y chromosome genes

Indexed keywords

CO-EXPRESSION NETWORKS; EXPRESSION DATA; NETWORK-BASED APPROACH; PROSTATE CANCERS; Y CHROMOSOMES;

EID: 84908509275     PISSN: 00104825     EISSN: 18790534     Source Type: Journal    
DOI: 10.1016/j.compbiomed.2014.08.020     Document Type: Article
Times cited : (18)

References (44)
  • 1
    • 4043181214 scopus 로고    scopus 로고
    • Cancer genes and the pathways they control
    • Vogelstein B., Kinzler K.W. Cancer genes and the pathways they control. Nat. Med. 2004, 10:789-799.
    • (2004) Nat. Med. , vol.10 , pp. 789-799
    • Vogelstein, B.1    Kinzler, K.W.2
  • 2
    • 58549118238 scopus 로고    scopus 로고
    • Prostate cancer genomics: towards a new understanding
    • Witte J.S. Prostate cancer genomics: towards a new understanding. Nat. Rev. Genet. 2009, 10:77-82.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 77-82
    • Witte, J.S.1
  • 5
    • 0033655775 scopus 로고    scopus 로고
    • Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements
    • Butte A.J., Kohane I.S. Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements. Pac. Symp. Biocomput. 2000, 418-429.
    • (2000) Pac. Symp. Biocomput. , pp. 418-429
    • Butte, A.J.1    Kohane, I.S.2
  • 6
    • 61349180117 scopus 로고    scopus 로고
    • Gene regulatory network inference: data integration in dynamic models-a review
    • Hecker M., Lambeck S., Toepfer S., van Someren E., Guthke R. Gene regulatory network inference: data integration in dynamic models-a review. BioSystems 2009, 96:86-103.
    • (2009) BioSystems , vol.96 , pp. 86-103
    • Hecker, M.1    Lambeck, S.2    Toepfer, S.3    van Someren, E.4    Guthke, R.5
  • 9
    • 84887835489 scopus 로고    scopus 로고
    • Molecular pathways in prostate cancer
    • Mazaris E., Tsiotras A. Molecular pathways in prostate cancer. Nephro-Urol. Mon. 2013, 5:792-800.
    • (2013) Nephro-Urol. Mon. , vol.5 , pp. 792-800
    • Mazaris, E.1    Tsiotras, A.2
  • 11
    • 0842288337 scopus 로고    scopus 로고
    • Inferring cellular networks using probabilistic graphical models
    • Friedman N. Inferring cellular networks using probabilistic graphical models. Science 2004, 303:799-805.
    • (2004) Science , vol.303 , pp. 799-805
    • Friedman, N.1
  • 12
    • 15944364151 scopus 로고    scopus 로고
    • An empirical Bayes approach to inferring large-scale gene association networks
    • Schafer J., Strimmer K. An empirical Bayes approach to inferring large-scale gene association networks. Bioinformatics 2005, 21:754-764.
    • (2005) Bioinformatics , vol.21 , pp. 754-764
    • Schafer, J.1    Strimmer, K.2
  • 13
    • 0034710924 scopus 로고    scopus 로고
    • Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks
    • Butte A.J., Tamayo P., Slonim D., Golub T.R., Kohane I.S. Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks. Proc. Nat. Acad. Sci. U.S.A. 2000, 97:12182-12186.
    • (2000) Proc. Nat. Acad. Sci. U.S.A. , vol.97 , pp. 12182-12186
    • Butte, A.J.1    Tamayo, P.2    Slonim, D.3    Golub, T.R.4    Kohane, I.S.5
  • 16
    • 3042786293 scopus 로고    scopus 로고
    • A gene network for navigating the literature
    • Hoffmann R., Valencia A. A gene network for navigating the literature. Nat. Genet. 2004, 36:664.
    • (2004) Nat. Genet. , vol.36 , pp. 664
    • Hoffmann, R.1    Valencia, A.2
  • 18
    • 33646843024 scopus 로고    scopus 로고
    • Using gene ontology and genomic controlled vocabularies to analyze high-throughput gene lists: three tool comparison
    • Masseroli M., Pinciroli F. Using gene ontology and genomic controlled vocabularies to analyze high-throughput gene lists: three tool comparison. Comput. Biol. Med. 2006, 36:731-747.
    • (2006) Comput. Biol. Med. , vol.36 , pp. 731-747
    • Masseroli, M.1    Pinciroli, F.2
  • 20
    • 0027955166 scopus 로고
    • Endothelin-1 and fibroblast growth factors stimulate the mitogen-activated protein kinase signaling cascade in cardiac myocytes. The potential role of the cascade in the integration of two signaling pathways leading to myocyte hypertrophy
    • Bogoyevitch M.A., Glennon P.E., Andersson M.B., Clerk A., Lazou A., Marshall C.J., Parker P.J., Sugden P.H. Endothelin-1 and fibroblast growth factors stimulate the mitogen-activated protein kinase signaling cascade in cardiac myocytes. The potential role of the cascade in the integration of two signaling pathways leading to myocyte hypertrophy. J. Biol. Chem. 1994, 269:1110-1119.
    • (1994) J. Biol. Chem. , vol.269 , pp. 1110-1119
    • Bogoyevitch, M.A.1    Glennon, P.E.2    Andersson, M.B.3    Clerk, A.4    Lazou, A.5    Marshall, C.J.6    Parker, P.J.7    Sugden, P.H.8
  • 21
    • 84865730611 scopus 로고
    • Set of measures of centrality based on betweenness
    • Freeman L.C. Set of measures of centrality based on betweenness. Sociometry 1977, 40:35-41.
    • (1977) Sociometry , vol.40 , pp. 35-41
    • Freeman, L.C.1
  • 22
    • 0037062448 scopus 로고    scopus 로고
    • Community structure in social and biological networks
    • Girvan M., Newman M.E.J. Community structure in social and biological networks. Proc. Nat. Acad. Sci. U.S.A. 2002, 99:7821-7826.
    • (2002) Proc. Nat. Acad. Sci. U.S.A. , vol.99 , pp. 7821-7826
    • Girvan, M.1    Newman, M.E.J.2
  • 23
    • 34247622363 scopus 로고    scopus 로고
    • The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics
    • Yu H.Y., Kim P.M., Sprecher E., Trifonov V., Gerstein M. The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics. PLoS Comput. Biol. 2007, 3:713-720.
    • (2007) PLoS Comput. Biol. , vol.3 , pp. 713-720
    • Yu, H.Y.1    Kim, P.M.2    Sprecher, E.3    Trifonov, V.4    Gerstein, M.5
  • 24
    • 84888103756 scopus 로고    scopus 로고
    • Computational prediction of protein-protein interaction networks: algo-rithms and resources
    • Zahiri J., Bozorgmehr J.H., Masoudi-Nejad A. Computational prediction of protein-protein interaction networks: algo-rithms and resources. Curr. Genomics 2013, 14:397-414.
    • (2013) Curr. Genomics , vol.14 , pp. 397-414
    • Zahiri, J.1    Bozorgmehr, J.H.2    Masoudi-Nejad, A.3
  • 26
    • 48449102450 scopus 로고    scopus 로고
    • Hubba: hub objects analyzer-a framework of interactome hubs identification for network biology
    • Lin C.Y., Chin C.H., Wu H.H., Chen S.H., Ho C.W., Ko M.T. Hubba: hub objects analyzer-a framework of interactome hubs identification for network biology. Nucleic Acids Res. 2008, 36:W438-W443.
    • (2008) Nucleic Acids Res. , vol.36 , pp. W438-W443
    • Lin, C.Y.1    Chin, C.H.2    Wu, H.H.3    Chen, S.H.4    Ho, C.W.5    Ko, M.T.6
  • 28
    • 84873802661 scopus 로고    scopus 로고
    • Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers
    • Reimand J., Bader G.D. Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers. Mol. Syst. Biol. 2013, 9:637.
    • (2013) Mol. Syst. Biol. , vol.9 , pp. 637
    • Reimand, J.1    Bader, G.D.2
  • 30
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: kyoto encyclopedia of genes and genomes
    • Kanehisa M., Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 2000, 28:27-30.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 32
    • 4644326931 scopus 로고    scopus 로고
    • Genomic analysis of regulatory network dynamics reveals large topological changes
    • Luscombe N.M., Babu M.M., Yu H., Snyder M., Teichmann S.A., Gerstein M. Genomic analysis of regulatory network dynamics reveals large topological changes. Nature 2004, 431:308-312.
    • (2004) Nature , vol.431 , pp. 308-312
    • Luscombe, N.M.1    Babu, M.M.2    Yu, H.3    Snyder, M.4    Teichmann, S.A.5    Gerstein, M.6
  • 33
    • 34247535888 scopus 로고    scopus 로고
    • A non-genetic basis for cancer progression and metastasis: self-organizing attractors in cell regulatory networks
    • Huang S., Ingber D.E. A non-genetic basis for cancer progression and metastasis: self-organizing attractors in cell regulatory networks. Breast Dis. 2006, 26:27-54.
    • (2006) Breast Dis. , vol.26 , pp. 27-54
    • Huang, S.1    Ingber, D.E.2
  • 34
    • 0029873670 scopus 로고    scopus 로고
    • Role of programmed (apoptotic) cell death during the progression and therapy for prostate cancer
    • Denmeade S.R., Lin X.S., Isaacs J.T. Role of programmed (apoptotic) cell death during the progression and therapy for prostate cancer. Prostate 1996, 28:251-265.
    • (1996) Prostate , vol.28 , pp. 251-265
    • Denmeade, S.R.1    Lin, X.S.2    Isaacs, J.T.3
  • 35
    • 0035853055 scopus 로고    scopus 로고
    • From transforming growth factor-beta signaling to androgen action: identification of Smad3 as an androgen receptor coregulator in prostate cancer cells
    • Kang H.Y., Lin H.K., Hu Y.C., Yeh S., Huang K.E., Chang C. From transforming growth factor-beta signaling to androgen action: identification of Smad3 as an androgen receptor coregulator in prostate cancer cells. Proc. Nat. Acad. Sci. U.S.A. 2001, 98:3018-3023.
    • (2001) Proc. Nat. Acad. Sci. U.S.A. , vol.98 , pp. 3018-3023
    • Kang, H.Y.1    Lin, H.K.2    Hu, Y.C.3    Yeh, S.4    Huang, K.E.5    Chang, C.6
  • 36
    • 71149084382 scopus 로고    scopus 로고
    • Revealing global regulatory perturbations across human cancers
    • Goodarzi H., Elemento O., Tavazoie S. Revealing global regulatory perturbations across human cancers. Mol. Cell. 2009, 36:900-911.
    • (2009) Mol. Cell. , vol.36 , pp. 900-911
    • Goodarzi, H.1    Elemento, O.2    Tavazoie, S.3
  • 38
    • 79953226340 scopus 로고    scopus 로고
    • Dangerous liaisons in prostate cancer. Clinical and biological implications of recurrent gene fusions
    • Perner S. Dangerous liaisons in prostate cancer. Clinical and biological implications of recurrent gene fusions. Der Pathol. 2010, 31(Suppl. 2):121-125.
    • (2010) Der Pathol. , vol.31 , pp. 121-125
    • Perner, S.1
  • 41
    • 0033365196 scopus 로고    scopus 로고
    • Gonadoblastoma, testicular and prostate cancers, and the TSPY gene
    • Lau Y.F. Gonadoblastoma, testicular and prostate cancers, and the TSPY gene. Am. J. Hum. Genet. 1999, 64:921-927.
    • (1999) Am. J. Hum. Genet. , vol.64 , pp. 921-927
    • Lau, Y.F.1
  • 44
    • 0034029785 scopus 로고    scopus 로고
    • Expression analysis of thirty one Y chromosome genes in human prostate cancer
    • Lau Y.F., Zhang J. Expression analysis of thirty one Y chromosome genes in human prostate cancer. Mol. Carcinog. 2000, 27:308-321.
    • (2000) Mol. Carcinog. , vol.27 , pp. 308-321
    • Lau, Y.F.1    Zhang, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.