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Volumn 5, Issue 5, 2014, Pages

Metagenomic assay for identification of microbial pathogens in tumor tissues

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; DNA MICROARRAY; DNA PROBE; HUMAN; HUMAN TISSUE; METAGENOMICS; MICROARRAY ANALYSIS; MICROARRAY KIT; NONHUMAN; POLYMERASE CHAIN REACTION; PROCESS DEVELOPMENT; SEQUENCE ANALYSIS; TUMOR VIRUS; VIRUS DETECTION; VIRUS IDENTIFICATION; ANIMAL; BACTERIUM; CHEMISTRY; COMPARATIVE GENOMIC HYBRIDIZATION; FEMALE; FUNGUS; GENETICS; ISOLATION AND PURIFICATION; MALE; MICROBIOLOGY; NEOPLASM; PILOT STUDY; PROCEDURES; VIRUS;

EID: 84908428558     PISSN: 21612129     EISSN: 21507511     Source Type: Journal    
DOI: 10.1128/mBio.01714-14     Document Type: Article
Times cited : (26)

References (44)
  • 1
    • 84861648384 scopus 로고    scopus 로고
    • Global burden of cancers attributable to infections in 2008: A review and synthetic analysis
    • de Martel C, Ferlay J, Franceschi S, Vignat J, Bray F, Forman D, Plummer M. 2012. Global burden of cancers attributable to infections in 2008: a review and synthetic analysis. Lancet Oncol. 13:607-615. http:// dx.doi.org/10.1016/S1470-2045(12)70137-7.
    • (2012) Lancet Oncol , vol.13 , pp. 607-615
    • de Martel, C.1    Ferlay, J.2    Franceschi, S.3    Vignat, J.4    Bray, F.5    Forman, D.6    Plummer, M.7
  • 2
    • 84862291080 scopus 로고    scopus 로고
    • Microbiology: Learning about who we are
    • Relman DA. 2012. Microbiology: learning about who we are. Nature 486:194-195. http://dx.doi.org/10.1038/486194a.
    • (2012) Nature , vol.486 , pp. 194-195
    • Relman, D.A.1
  • 3
    • 84862276328 scopus 로고    scopus 로고
    • Structure, function and diversity of the healthy human microbiome
    • The Human Microbiome Project Consortium. 2012. Structure, function and diversity of the healthy human microbiome. Nature 486:207-214. http://dx.doi.org/10.1038/nature11234.
    • (2012) Nature , vol.486 , pp. 207-214
    • The Human Microbiome Project Consortium1
  • 4
    • 84896318771 scopus 로고    scopus 로고
    • Diagnosis and classification of Crohn's disease
    • Laass MW, Roggenbuck D, Conrad K. 2014. Diagnosis and classification of Crohn's disease. Autoimmun. Rev. 13:467- 471. http://dx.doi.org/ 10.1016/j.autrev.2014.01.029.
    • (2014) Autoimmun. Rev , vol.13 , pp. 467-471
    • Laass, M.W.1    Roggenbuck, D.2    Conrad, K.3
  • 5
    • 84892367647 scopus 로고    scopus 로고
    • Irritable bowel syndrome, inflammatory bowel disease and the microbiome
    • Major G, Spiller R. 2014. Irritable bowel syndrome, inflammatory bowel disease and the microbiome. Curr. Opin. Endocrinol. Diabetes Obes. 21: 15-21. http://dx.doi.org/10.1097/MED.0000000000000032.
    • (2014) Curr. Opin. Endocrinol. Diabetes Obes , vol.21 , pp. 15-21
    • Major, G.1    Spiller, R.2
  • 7
    • 84886091355 scopus 로고    scopus 로고
    • What lives on our skin: Ecology, genomics and therapeutic opportunities of the skin microbiome
    • Scharschmidt TC, Fischbach MA. 2013. What lives on our skin: ecology, genomics and therapeutic opportunities of the skin microbiome. Drug Discov. Today Dis. Mech. 10:3- 4. http://dx.doi.org/10.1016/ j.ddtec.2012.10.014.
    • (2013) Drug Discov. Today Dis. Mech , vol.10 , pp. 3-4
    • Scharschmidt, T.C.1    Fischbach, M.A.2
  • 8
    • 84892528346 scopus 로고    scopus 로고
    • Significance of the microbiome in chronic obstructive pulmonary disease
    • Martinez FJ, Erb-Downward JR, Huffnagle GB. 2013. Significance of the microbiome in chronic obstructive pulmonary disease. Ann. Am. Thorac. Soc. 10(Suppl):S170 -S179. http://dx.doi.org/10.1513/ AnnalsATS.201306-204AW.
    • (2013) Ann. Am. Thorac. Soc , vol.10 , pp. S170-S179
    • Martinez, F.J.1    Erb-Downward, J.R.2    Huffnagle, G.B.3
  • 9
    • 84893506260 scopus 로고    scopus 로고
    • Lung microbiome for clinicians. New discoveries about bugs in healthy and diseased lungs
    • Segal LN, Rom WN, Weiden MD. 2014. Lung microbiome for clinicians. New discoveries about bugs in healthy and diseased lungs. Ann. Am. Thorac. Soc. 11:108 -116. http://dx.doi.org/10.1513/AnnalsATS.201310- 339FR.
    • (2014) Ann. Am. Thorac. Soc , vol.11 , pp. 108-116
    • Segal, L.N.1    Rom, W.N.2    Weiden, M.D.3
  • 11
    • 84889585999 scopus 로고    scopus 로고
    • Influence of host immunoregulatory genes, ER stress and gut microbiota on the shared pathogenesis of inflammatory bowel disease and type 1 diabetes
    • Gjymishka A, Coman RM, Brusko TM, Glover SC. 2013. Influence of host immunoregulatory genes, ER stress and gut microbiota on the shared pathogenesis of inflammatory bowel disease and type 1 diabetes. Immunotherapy 5:1357-1366. http://dx.doi.org/10.2217/imt.13.130.
    • (2013) Immunotherapy , vol.5 , pp. 1357-1366
    • Gjymishka, A.1    Coman, R.M.2    Brusko, T.M.3    Glover, S.C.4
  • 12
    • 84898789502 scopus 로고    scopus 로고
    • Regulation of the immune system by the resident intestinal bacteria
    • Kamada N, Núñez G. 2014. Regulation of the immune system by the resident intestinal bacteria. Gastroenterology 146:1477-1488. http:// dx.doi.org/10.1053/j.gastro.2014.01.060.
    • (2014) Gastroenterology , vol.146 , pp. 1477-1488
    • Kamada, N.1    Núñez, G.2
  • 13
    • 84891601287 scopus 로고    scopus 로고
    • Role of the enteric microbiota in intestinal homeostasis and inflammation
    • Koboziev I, Reinoso Webb C, Furr KL, Grisham MB. 2014. Role of the enteric microbiota in intestinal homeostasis and inflammation. Free Radic. Biol. Med. 68C:122-133. http://dx.doi.org/10.1016/ j.freeradbiomed.2013.11.008.
    • (2014) Free Radic. Biol. Med , vol.68C , pp. 122-133
    • Koboziev, I.1    Reinoso Webb, C.2    Furr, K.L.3    Grisham, M.B.4
  • 14
    • 84900432317 scopus 로고    scopus 로고
    • Dominant effects of the diet on the microbiome and the local and systemic immune response in mice
    • Ooi JH, Waddell A, Lin YD, Albert I, Rust LT, Holden V, Cantorna MT. 2014. Dominant effects of the diet on the microbiome and the local and systemic immune response in mice. PLoS One 9:e86366. http:// dx.doi.org/10.1371/journal.pone.0086366.
    • (2014) PLoS One , vol.9
    • Ooi, J.H.1    Waddell, A.2    Lin, Y.D.3    Albert, I.4    Rust, L.T.5    Holden, V.6    Cantorna, M.T.7
  • 17
    • 84884748212 scopus 로고    scopus 로고
    • Sequencing the human microbiome in health and disease
    • Cox MJ, Cookson WO, Moffatt MF. 2013. Sequencing the human microbiome in health and disease. Hum. Mol. Genet. 22:R88-R94. http:// dx.doi.org/10.1093/hmg/ddt398.
    • (2013) Hum. Mol. Genet , vol.22 , pp. R88-R94
    • Cox, M.J.1    Cookson, W.O.2    Moffatt, M.F.3
  • 18
    • 84897558865 scopus 로고    scopus 로고
    • Human papillomavirus community in healthy persons, defined by metagenomics analysis of HMP (human microbiome project) shotgun sequencing datasets
    • Ma Y, Madupu R, Karaoz U, Nossa CW, Yang L, Yooseph S, Yachimski PS, Brodie EL, Nelson KE, Pei Z. 2014. Human papillomavirus community in healthy persons, defined by metagenomics analysis of HMP (human microbiome project) shotgun sequencing datasets. J. Virol. 88: 4786-4797. http://dx.doi.org/10.1128/JVI.00093-14.
    • (2014) J. Virol , vol.88 , pp. 4786-4797
    • Ma, Y.1    Madupu, R.2    Karaoz, U.3    Nossa, C.W.4    Yang, L.5    Yooseph, S.6    Yachimski, P.S.7    Brodie, E.L.8    Nelson, K.E.9    Pei, Z.10
  • 20
    • 80355149025 scopus 로고    scopus 로고
    • Using a pan-viral microarray assay (Virochip) to screen clinical samples for viral pathogens
    • Chen EC, Miller SA, DeRisi JL, Chiu CY. 2011. Using a pan-viral microarray assay (Virochip) to screen clinical samples for viral pathogens. J. Vis. Exp. 50:2536. http://dx.doi.org/10.3791/2536.
    • (2011) J. Vis. Exp , vol.50 , pp. 2536
    • Chen, E.C.1    Miller, S.A.2    DeRisi, J.L.3    Chiu, C.Y.4
  • 23
    • 84897128562 scopus 로고    scopus 로고
    • Kingdom-agnostic metagenomics and the importance of complete characterization of enteric microbial communities
    • Norman JM, Handley SA, Virgin HW. 2014. Kingdom-agnostic metagenomics and the importance of complete characterization of enteric microbial communities. Gastroenterology 146:1459 -1469. http:// dx.doi.org/10.1053/j.gastro.2014.02.001.
    • (2014) Gastroenterology , vol.146 , pp. 1459-1469
    • Norman, J.M.1    Handley, S.A.2    Virgin, H.W.3
  • 24
    • 23944482446 scopus 로고    scopus 로고
    • Usefulness of repeated GenomiPhi, a phi29 DNA polymerase-based rolling circle amplification kit, for generation of large amounts of plasmid DNA
    • Sato M, Ohtsuka M, Ohmi Y. 2005. Usefulness of repeated GenomiPhi, a phi29 DNA polymerase-based rolling circle amplification kit, for generation of large amounts of plasmid DNA. Biomol. Eng. 22:129-132. http:// dx.doi.org/10.1016/j.bioeng.2005.05.001.
    • (2005) Biomol. Eng , vol.22 , pp. 129-132
    • Sato, M.1    Ohtsuka, M.2    Ohmi, Y.3
  • 25
    • 44949193188 scopus 로고    scopus 로고
    • GenomePlex wholegenome amplification
    • Arneson N, Hughes S, Houlston R, Done S. 2008. GenomePlex wholegenome amplification. CSH Protoc. 2008:4920. http://dx.doi.org/ 10.1101/pdb.prot4920.
    • (2008) CSH Protoc , vol.2008 , pp. 4920
    • Arneson, N.1    Hughes, S.2    Houlston, R.3    Done, S.4
  • 26
    • 84857997501 scopus 로고    scopus 로고
    • A new whole genome amplification method for studying clonal evolution patterns in malignant colorectal polyps
    • Hirsch D, Camps J, Varma S, Kemmerling R, Stapleton M, Ried T, Gaiser T. 2012. A new whole genome amplification method for studying clonal evolution patterns in malignant colorectal polyps. Genes Chromosomes Cancer 51:490-500. http://dx.doi.org/10.1002/gcc.21937.
    • (2012) Genes Chromosomes Cancer , vol.51 , pp. 490-500
    • Hirsch, D.1    Camps, J.2    Varma, S.3    Kemmerling, R.4    Stapleton, M.5    Ried, T.6    Gaiser, T.7
  • 27
    • 84864115182 scopus 로고    scopus 로고
    • HPV specific testing: A requirement for oropharyngeal squamous cell carcinoma patients
    • Robinson M, Schache A, Sloan P, Thavaraj S. 2012. HPV specific testing: a requirement for oropharyngeal squamous cell carcinoma patients. Head Neck Pathol. 6:S83-S90. http://dx.doi.org/10.1007/s12105-012-0370-7.
    • (2012) Head Neck Pathol , vol.6 , pp. S83-S90
    • Robinson, M.1    Schache, A.2    Sloan, P.3    Thavaraj, S.4
  • 29
    • 56449114183 scopus 로고    scopus 로고
    • HPV prophylactic vaccines and the potential prevention of noncervical cancers in both men and women
    • Gillison ML, Chaturvedi AK, Lowy DR. 2008. HPV prophylactic vaccines and the potential prevention of noncervical cancers in both men and women. Cancer 113(10 Suppl):3036 -3046. http://dx.doi.org/10.1002/ cncr.23764.
    • (2008) Cancer , vol.113 , Issue.10 , pp. 3036-3046
    • Gillison, M.L.1    Chaturvedi, A.K.2    Lowy, D.R.3
  • 32
    • 45249091702 scopus 로고    scopus 로고
    • Human papillomavirus type 16 late gene expression is regulated by cellular RNA processing factors in response to epithelial differentiation
    • Cumming SA, Cheun-Im T, Milligan SG, Graham SV. 2008. Human papillomavirus type 16 late gene expression is regulated by cellular RNA processing factors in response to epithelial differentiation. Biochem. Soc. Trans. 36:522-524. http://dx.doi.org/10.1042/BST0360522.
    • (2008) Biochem. Soc. Trans , vol.36 , pp. 522-524
    • Cumming, S.A.1    Cheun-Im, T.2    Milligan, S.G.3    Graham, S.V.4
  • 33
    • 59549085974 scopus 로고    scopus 로고
    • Transcriptional regulation of the papillomavirus oncogenes by cellular and viral transcription factors in cervical carcinoma
    • Thierry F. 2009. Transcriptional regulation of the papillomavirus oncogenes by cellular and viral transcription factors in cervical carcinoma. Virology 384:375-379. http://dx.doi.org/10.1016/j.virol.2008.11.014.
    • (2009) Virology , vol.384 , pp. 375-379
    • Thierry, F.1
  • 34
    • 84884353455 scopus 로고    scopus 로고
    • The E4 protein; structure, function and patterns of expression
    • Doorbar J. 2013. The E4 protein; structure, function and patterns of expression. Virology 445:80 -98. http://dx.doi.org/10.1016/ j.virol.2013.07.008.
    • (2013) Virology , vol.445 , pp. 80-98
    • Doorbar, J.1
  • 35
    • 84879135702 scopus 로고    scopus 로고
    • Multiplex identification of human papillomavirus 16 DNA integration sites in cervical carcinomas
    • Xu B, Chotewutmontri S, Wolf S, Klos U, Schmitz M, Dürst M, Schwarz E. 2013. Multiplex identification of human papillomavirus 16 DNA integration sites in cervical carcinomas. PLoS One 8:e66693. http:// dx.doi.org/10.1371/journal.pone.0066693.
    • (2013) PLoS One , vol.8
    • Xu, B.1    Chotewutmontri, S.2    Wolf, S.3    Klos, U.4    Schmitz, M.5    Dürst, M.6    Schwarz, E.7
  • 36
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10:R25. http://dx.doi.org/10.1186/gb-2009-10-3- r25.
    • (2009) Genome Biol , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 37
    • 84875634162 scopus 로고    scopus 로고
    • Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration
    • Thorvaldsdóttir H, Robinson JT, Mesirov JP. 2013. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief. Bioinform. 14:178-192. http://dx.doi.org/10.1093/bib/ bbs017.
    • (2013) Brief. Bioinform , vol.14 , pp. 178-192
    • Thorvaldsdóttir, H.1    Robinson, J.T.2    Mesirov, J.P.3
  • 42
    • 34548514438 scopus 로고    scopus 로고
    • Pan-viral screening of respiratory tract infections in adults with and without asthma reveals unexpected human coronavirus and human rhinovirus diversity
    • Kistler A, Avila PC, Rouskin S, Wang D, Ward T, Yagi S, Schnurr D, Ganem D, DeRisi JL, Boushey HA. 2007. Pan-viral screening of respiratory tract infections in adults with and without asthma reveals unexpected human coronavirus and human rhinovirus diversity. J. Infect. Dis. 196: 817-825. http://dx.doi.org/10.1086/520816.
    • (2007) J. Infect. Dis , vol.196 , pp. 817-825
    • Kistler, A.1    Avila, P.C.2    Rouskin, S.3    Wang, D.4    Ward, T.5    Yagi, S.6    Schnurr, D.7    Ganem, D.8    DeRisi, J.L.9    Boushey, H.A.10


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