Probing the rate-limiting step for intramolecular transfer of a transcription factor between specific sites on the same DNA molecule by 15Nz-exchange NMR spectroscopy

Journal of the American Chemical Society

Volumn 136, Issue 41, 2014, Pages 14369-14372

  Ryu, Kyoung Seok ^a,b   Tugarinov, Vitali ^a   Clore, G Marius ^a  

^a NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES   (United States)

^b Korea Basic Science Institute (KBSI)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

DNA MOLECULES; EXCHANGE NMR; INTRAMOLECULAR TRANSFER; RATE-LIMITING STEPS; SPECIFIC SITES;

DNA; NITROGEN 15; SODIUM CHLORIDE; TRANSCRIPTION FACTOR; HOMEODOMAIN PROTEIN; HOXD9 PROTEIN, HUMAN; NITROGEN; TUMOR PROTEIN;

ARTICLE; CONTROLLED STUDY; DIFFUSION; DISSOCIATION; DNA BINDING; GENE TRANSFER; HALF LIFE TIME; MOLECULAR DYNAMICS; NITROGEN NUCLEAR MAGNETIC RESONANCE; CHEMISTRY; HUMAN; KINETICS; METABOLISM; NUCLEAR MAGNETIC RESONANCE;

DNA; HOMEODOMAIN PROTEINS; HUMANS; KINETICS; NEOPLASM PROTEINS; NITROGEN ISOTOPES; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR;

EID: 84908376944     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja5081585     Document Type: Article

References (23)

1. Berg, O. G.; von Hippel, P. H. Annu. Rev. Biophys. Biophys. Chem. 1985, 14, 131-160
2. Gowers, D. M.; Wilson, G. G.; Halford, S. E. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 15883-15888
3. Halford, S. E. Biochem. Soc. Trans. 2009, 37, 343-348
4. Givaty, O.; Levy, Y. J. Mol. Biol. 2009, 385, 1087-1097
5. Redding, S.; Greene, E. C. Chem. Phys. Lett. 2013, 570, 1-11
6. Marcovitz, A.; Levy, Y. Biophys. J. 2013, 104, 2042-2050
7. Vuzman, D.; Levy, Y. Mol. Biosyst. 2012, 8, 47-57
8. Iwahara, J.; Clore, G. M. J. Am. Chem. Soc. 2006, 128, 404-405
9. Doucleff, M.; Clore, G. M. Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 18371-18376
10. Takayama, Y.; Clore, G. M. J. Biol. Chem. 2012, 287, 14349-14363
11. Takayama, Y.; Clore, G. M. J. Biol. Chem. 2012, 287, 26962-26970
12. Iwahara, J.; Clore, G. M. Nature 2006, 440, 1227-1230
13. Iwahara, J.; Zweckstetter, M.; Clore, G. M. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 15062-15067
14. Kissinger, C. R.; Liu, B.; Martin-Blanco, W.; Kornberg, T. B.; Pabo, C. O. Cell 1990, 63, 579-590
15. Fraenkel, E.; Rould, M. A.; Chambers, K. A.; Pabo, C. O. J. Mol. Biol. 1998, 284, 351-361
16. Sahu, D.; Clore, G. M.; Iwahara, J. J. Am. Chem. Soc. 2007, 129, 13232-13237
17. Affolter, M.; Percival-Smith, A.; Müler, M.; Leupin, W.; Gehring, W. J. Proc. Natl. Acad. Sci. U.S.A. 1990, 87, 4093-4097
18. Catron, K. M.; Iler, N.; Abate, C. Mol. Cell. Biol. 1993, 13, 2354-2365
19. Wang, Y. M.; Austin, R. H.; Cox, E. C. Phys. Rev. Lett. 2006, 97, 048302
20. Graneli, A.; Yeykal, C. C.; Robertson, R. B.; Greene, E. C. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 1221-1226
21. Blainey, P. C.; Luo, G.; Kou, S. C.; Mangel, W. F.; Verdine, G. L.; Bagchi, B.; Xie, X. S. Nature Struct. Mol. Biol. 2009, 16, 1224-1229
22. Loth, K.; Gnida, M.; Romanuka, J.; Kaptein, R.; Boelens, R. J. Biomol. NMR 2013, 56, 41-49
23. Record, M. T.; Anderson, C. F.; Lohman, T. M. Q. Rev. Biophys. 1978, 11, 103-178