-
1
-
-
0033056554
-
Multiprotein·DNA complexes in transcriptional regulation
-
Wolberger, C. (1999) Multiprotein·DNA complexes in transcriptional regulation. Annu. Rev. Biophys. Biomol. Struct. 28, 29-56
-
(1999)
Annu. Rev. Biophys. Biomol. Struct.
, vol.28
, pp. 29-56
-
-
Wolberger, C.1
-
2
-
-
0034175998
-
Pairing SOX off: With partners in the regulation of embryonic development
-
DOI 10.1016/S0168-9525(99)01955-1, PII S0168952599019551
-
Kamachi, Y., Uchikawa, M., and Kondoh, H. (2000) Pairing SOX off: with partners in the regulation of embryonic development. Trends Genet. 16, 182-187 (Pubitemid 30169154)
-
(2000)
Trends in Genetics
, vol.16
, Issue.4
, pp. 182-187
-
-
Kamachi, Y.1
Uchikawa, M.2
Kondoh, H.3
-
3
-
-
0035125506
-
Coevolution of HMG domains and homeodomains and the generation of transcriptional regulation by Sox/POU complexes
-
DOI 10.1002/1097-4652(2001)9999:9999<000::AID-JCP1046>3.0.CO;2-Y
-
Dailey, L., and Basilico, C. (2001) Coevolution of HMG domains and homeodomains and the generation of transcriptional regulation by Sox/POU complexes. J. Cell Physiol. 186, 315-328 (Pubitemid 32147715)
-
(2001)
Journal of Cellular Physiology
, vol.186
, Issue.3
, pp. 315-328
-
-
Dailey, L.1
Basilico, C.2
-
4
-
-
0035929239
-
Structural basis for SRY-dependent 46-X,Y sex reversal: Modulation of DNA bending by a naturally occurring point mutation
-
DOI 10.1006/jmbi.2001.4977
-
Murphy, E. C., Zhurkin, V. B., Louis, J. M., Cornilescu, G., and Clore, G. M. (2001) Structural basis for SRY-dependent 46-X,Y sex reversal: modulation of DNA bending by a naturally occurring point mutation. J. Mol. Biol. 312, 481-499 (Pubitemid 32928119)
-
(2001)
Journal of Molecular Biology
, vol.312
, Issue.3
, pp. 481-499
-
-
Murphy, E.C.1
Zhurkin, V.B.2
Louis, J.M.3
Cornilescu, G.4
Clore, G.M.5
-
5
-
-
0028200262
-
Crystal structure of the Oct-1 POU domain bound to an octamer site: DNA recognition with tethered DNA-binding modules
-
DOI 10.1016/0092-8674(94)90231-3
-
Klemm, J. D., Rould, M. A., Aurora, R., Herr, W., and Pabo, C. O. (1994) Crystal structure of the Oct1 POU domain bound to an octamer site: DNA recognition with tethered DNA-binding modules. Cell 77, 21-32 (Pubitemid 24184684)
-
(1994)
Cell
, vol.77
, Issue.1
, pp. 21-32
-
-
Klemm, J.D.1
Rould, M.A.2
Aurora, R.3
Herr, W.4
Pabo, C.O.5
-
6
-
-
0034791092
-
Differential dimer activities of the transcription factor Oct-1 by DNA-induced interface swapping
-
DOI 10.1016/S1097-2765(01)00336-7
-
Reményi, A., Tomilin, A., Pohl, E., Lins, K., Philippsen, A., Reinbold, R., Schöler, H. R., and Wilmanns, M. (2001) Differential dimer activities of the transcription factor Oct1 by DNA-induced interface swapping. Mol. Cell 8, 569-580 (Pubitemid 32946934)
-
(2001)
Molecular Cell
, vol.8
, Issue.3
, pp. 569-580
-
-
Remenyi, A.1
Tomilin, A.2
Pohl, E.3
Lins, K.4
Philippsen, A.5
Reinbold, R.6
Scholer, H.R.7
Wilmanns, M.8
-
7
-
-
0346462991
-
Molecular Basis for Synergistic Transcriptional Activation by Oct1 and Sox2 Revealed from the Solution Structure of the 42-kDa Oct1·Sox2· Hoxb1-DNA Ternary Transcription Factor Complex
-
DOI 10.1074/jbc.M309790200
-
Williams, D. C., Jr., Cai, M., and Clore, G. M. (2004) Molecular basis for synergistic transcriptional activation by Oct1 and Sox2 revealed from the solution structure of the 42-kDa Oct1·Sox2·Hoxb1-DNA ternary transcription factor complex. J. Biol. Chem. 279, 1449-1457 (Pubitemid 38082673)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.2
, pp. 1449-1457
-
-
Williams Jr., D.C.1
Cai, M.2
Clore, G.M.3
-
8
-
-
0042161878
-
Crystal structure of a POU/HMG/DNA ternary complex suggests differential assembly of Oct4 and Sox2 on two enhancers
-
DOI 10.1101/gad.269303
-
Reményi, A., Lins, K., Nissen, L. J., Reinbold, R., Schöler, H. R., and Wilmanns, M. (2003) Crystal structure of a POU·HMG·DNA ternary complex suggests differential assembly of Oct4 and Sox2 on two enhancers. Genes Dev. 17, 2048-2059 (Pubitemid 36999330)
-
(2003)
Genes and Development
, vol.17
, Issue.16
, pp. 2048-2059
-
-
Remenyi, A.1
Lins, K.2
Nissen, L.J.3
Reinbold, R.4
Scholer, H.R.5
Wilmanns, M.6
-
10
-
-
0024531901
-
Facilitated target location in biological systems
-
von Hippel, P. H., and Berg, O. G. (1989) Facilitated target location in biological systems. J. Biol. Chem. 264, 675-678
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 675-678
-
-
Von Hippel, P.H.1
Berg, O.G.2
-
11
-
-
3042579602
-
How do site-specific DNA-binding proteins find their targets?
-
DOI 10.1093/nar/gkh624
-
Halford, S. E., and Marko, J. F. (2004) How do site-specific DNA-binding proteins find their targets? Nucleic Acids Res. 32, 3040-3052 (Pubitemid 39022995)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.10
, pp. 3040-3052
-
-
Halford, S.E.1
Marko, J.F.2
-
12
-
-
70349093561
-
Theory, practice, and applications of paramagnetic relaxation enhancement for the characterization of transient low population states of biological macromolecules and their complexes
-
Clore, G. M., and Iwahara, J. (2009) Theory, practice, and applications of paramagnetic relaxation enhancement for the characterization of transient low population states of biological macromolecules and their complexes. Chem. Rev. 109, 4108-4139
-
(2009)
Chem. Rev.
, vol.109
, pp. 4108-4139
-
-
Clore, G.M.1
Iwahara, J.2
-
13
-
-
79251586250
-
Exploring sparsely populated states of macromolecules by diamagnetic and paramagnetic NMR relaxation
-
Clore, G. M. (2011) Exploring sparsely populated states of macromolecules by diamagnetic and paramagnetic NMR relaxation. Protein Sci. 20, 229-246
-
(2011)
Protein Sci.
, vol.20
, pp. 229-246
-
-
Clore, G.M.1
-
14
-
-
5644226078
-
1H paramagnetic relaxation enhancement
-
Iwahara, J., Schwieters, C. D., and Clore, G. M. (2004) Characterization of nonspecific protein/DNA interactions by 1H paramagnetic relaxation enhancement. J. Am. Chem. Soc. 126, 12800-12808 (Pubitemid 39372309)
-
(2004)
Journal of the American Chemical Society
, vol.126
, Issue.40
, pp. 12800-12808
-
-
Iwahara, J.1
Schwieters, C.D.2
Clore, G.M.3
-
15
-
-
33646356250
-
Detecting transient intermediates in macromolecular binding by paramagnetic NMR
-
Iwahara, J., and Clore, G. M. (2006) Detecting transient intermediates in macromolecular binding by paramagnetic NMR. Nature 440, 1227-1230
-
(2006)
Nature
, vol.440
, pp. 1227-1230
-
-
Iwahara, J.1
Clore, G.M.2
-
16
-
-
33750078971
-
NMR structural and kinetic characterization of a homeodomain diffusing and hopping on nonspecific DNA
-
DOI 10.1073/pnas.0605868103
-
Iwahara, J., Zweckstetter, M., and Clore, G. M. (2006) NMR structural and kinetic characterization of a homeodomain diffusing and hopping on non-specific DNA. Proc. Natl. Acad. Sci. U.S.A. 103, 15062-15067 (Pubitemid 44583164)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.41
, pp. 15062-15067
-
-
Iwahara, J.1
Zweckstetter, M.2
Clore, G.M.3
-
17
-
-
79959360942
-
Intra- and intermolecular translocation of the bidomain transcription factor Oct1 characterized by liquid crystal and paramagnetic NMR
-
Takayama, Y., and Clore, G. M. (2011) Intra- and intermolecular translocation of the bidomain transcription factor Oct1 characterized by liquid crystal and paramagnetic NMR. Proc. Natl. Acad. Sci. U.S.A. 108, E169-E176
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
-
-
Takayama, Y.1
Clore, G.M.2
-
18
-
-
84860359548
-
Interplay between minor and major groove-binding transcription factors Sox2 and Oct1 in translocation on DNA studied by paramagnetic and diamagnetic NMR
-
Takayama, Y., and Clore, G. M. (2012) Interplay between minor and major groove-binding transcription factors Sox2 and Oct1 in translocation on DNA studied by paramagnetic and diamagnetic NMR. J. Biol. Chem. 287, 14349-14363
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 14349-14363
-
-
Takayama, Y.1
Clore, G.M.2
-
19
-
-
80755172250
-
Exploring translocation of proteins on DNA by NMR
-
Clore, G. M. (2011) Exploring translocation of proteins on DNA by NMR. J. Biomol. NMR 51, 209-219
-
(2011)
J. Biomol. NMR
, vol.51
, pp. 209-219
-
-
Clore, G.M.1
-
20
-
-
31544448614
-
Direct observation of enhanced translocation of a homeodomain between DNA cognate sites by NMR exchange spectroscopy
-
DOI 10.1021/ja056786o
-
Iwahara, J., and Clore, G. M. (2006) Direct observation of enhanced translocation of a homeodomain between DNA cognate sites by NMR exchange spectroscopy. J. Am. Chem. Soc. 128, 404-405 (Pubitemid 43157521)
-
(2006)
Journal of the American Chemical Society
, vol.128
, Issue.2
, pp. 404-405
-
-
Iwahara, J.1
Clore, G.M.2
-
21
-
-
52949100201
-
Global jumping and domain-specific intersegment transfer between DNA cognate sites of the multidomain transcription factor Oct1
-
Doucleff, M., and Clore, G. M. (2008) Global jumping and domain-specific intersegment transfer between DNA cognate sites of the multidomain transcription factor Oct1. Proc. Natl. Acad. Sci. U.S.A. 105, 13871-13876
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 13871-13876
-
-
Doucleff, M.1
Clore, G.M.2
-
22
-
-
0030820931
-
Synergistic activation of the fibroblast growth factor 4 enhancer by Sox2 and Oct-3 depends on protein-protein interactions facilitated by a specific spatial arrangement of factor binding sites
-
Ambrosetti, D. C., Basilico, C., and Dailey, L. (1997) Synergistic activation of the fibroblast growth factor 4 enhancer by Sox2 and Oct3 depends on protein/protein interactions facilitated by a specific spatial arrangement of factor binding sites. Mol. Cell Biol. 17, 6321-6329 (Pubitemid 27451176)
-
(1997)
Molecular and Cellular Biology
, vol.17
, Issue.11
, pp. 6321-6329
-
-
Ambrosetti, D.-C.1
Basilico, C.2
Dailey, L.3
-
23
-
-
0035827568
-
The recruitment of SOX·OCT complexes and the differential activity of HOXA1 and HOXB1 modulate the Hoxb1 auto-regulatory enhancer function
-
Di Rocco, G., Gavalas, A., Popperl, H., Krumlauf, R., Mavilio, F., and Zappavigna, V. (2001) The recruitment of SOX·OCT complexes and the differential activity of HOXA1 and HOXB1 modulate the Hoxb1 auto-regulatory enhancer function. J. Biol. Chem. 276, 20506-20515
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 20506-20515
-
-
Di Rocco, G.1
Gavalas, A.2
Popperl, H.3
Krumlauf, R.4
Mavilio, F.5
Zappavigna, V.6
-
24
-
-
0037533875
-
EDTA-derivatized deoxythymidine as a tool for rapid determination of protein binding polarity to DNA by intermolecular paramagnetic relaxation enhancement
-
DOI 10.1021/ja034488q
-
Iwahara, J., Anderson, D. E., Murphy, E. C., and Clore, G. M. (2003) EDTA-derivatized deoxythymidine as a tool for rapid determination of protein binding polarity to DNA by intermolecular paramagnetic relaxation enhancement. J. Am. Chem. Soc. 125, 6634-6635 (Pubitemid 36667439)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.22
, pp. 6634-6635
-
-
Iwahara, J.1
Anderson, D.E.2
Murphy, E.C.3
Clore, G.M.4
-
25
-
-
0029400480
-
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
-
Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR 6, 277-293
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
26
-
-
34249765651
-
NMR View: A computer program for the visualization and analysis of NMR data
-
Johnson, B. A., and Blevins, R. A. (1994) NMR View: A computer program for the visualization and analysis of NMR data. J. Biomol. NMR 4, 603-614
-
(1994)
J. Biomol. NMR
, vol.4
, pp. 603-614
-
-
Johnson, B.A.1
Blevins, R.A.2
-
27
-
-
35848970780
-
TROSY-based z-exchange spectroscopy: Application to the determination of the activation energy for intermolecular protein translocation between specific sites on different DNA molecules
-
DOI 10.1021/ja074604f
-
Sahu, D., Clore, G. M., and Iwahara, J. (2007) TROSY-based z-exchange spectroscopy: application to the determination of the activation energy for intermolecular protein translocation between specific sites on different DNA molecules. J. Am. Chem. Soc. 129, 13232-13237 (Pubitemid 350058364)
-
(2007)
Journal of the American Chemical Society
, vol.129
, Issue.43
, pp. 13232-13237
-
-
Sahu, D.1
Clore, G.M.2
Iwahara, J.3
-
28
-
-
33845182844
-
Two-dimensional chemical exchange NMR spectroscopy by proton-detected heteronuclear correlation
-
Montelione, G. T., and Wagner, G. (1989) Two-dimensional chemical exchange NMR spectroscopy by proton-detected heteronuclear correlation. J. Am. Chem. Soc. 111, 3096-3098
-
(1989)
J. Am. Chem. Soc.
, vol.111
, pp. 3096-3098
-
-
Montelione, G.T.1
Wagner, G.2
-
29
-
-
0001304511
-
Application of two-dimensional NMR to kinetics of chemical exchange
-
Perrin, C. L., and Dwyer, T. J. (1990) Application of two-dimensional NMR to kinetics of chemical exchange. Chem. Rev. 90, 935-967
-
(1990)
Chem. Rev.
, vol.90
, pp. 935-967
-
-
Perrin, C.L.1
Dwyer, T.J.2
-
31
-
-
0010957050
-
Reaction rates by nuclear magnetic resonance
-
McConnell, H. M. (1958) Reaction rates by nuclear magnetic resonance. J. Chem. Phys. 28, 430-431
-
(1958)
J. Chem. Phys.
, vol.28
, pp. 430-431
-
-
McConnell, H.M.1
-
32
-
-
0032557503
-
Electrostatic enhancement of diffusion-controlled protein-protein association: Comparison of theory and experiment on barnase and barstar
-
DOI 10.1006/jmbi.1998.1747
-
Vijayakumar, M., Wong, K. Y., Schreiber, G., Fersht, A. R., Szabo, A., and Zhou, H. X. (1998) Electrostatic enhancement of diffusion-controlled protein/protein association: comparison of theory and experiment on barnase and barstar. J. Mol. Biol. 278, 1015-1024 (Pubitemid 28239701)
-
(1998)
Journal of Molecular Biology
, vol.278
, Issue.5
, pp. 1015-1024
-
-
Vijayakumar, M.1
Wong, K.-Y.2
Schreiber, G.3
Fersht, A.R.4
Szabo, A.5
Zhou, H.-X.6
-
33
-
-
19744381543
-
Enhancement of association rates by nonspecific binding to DNA and cell membranes
-
Zhou, H. X., and Szabo, A. (2004) Enhancement of association rates by nonspecific binding to DNA and cell membranes. Phys. Rev. Lett. 93, 178101
-
(2004)
Phys. Rev. Lett.
, vol.93
, pp. 178101
-
-
Zhou, H.X.1
Szabo, A.2
-
34
-
-
84864280124
-
Sex-determining region Y-box 2 expression predicts poor prognosis in human ovarian carcinoma
-
March 9, 10.1016/j.humpath.2011.10.016
-
Zhang, J., Chang, D. Y., Mercado-Uribe, I., and Liu, J. (March 9, 2012) Sex-determining region Y-box 2 expression predicts poor prognosis in human ovarian carcinoma. Hum. Pathol. 10.1016/j.humpath.2011.10.016
-
(2012)
Hum. Pathol.
-
-
Zhang, J.1
Chang, D.Y.2
Mercado-Uribe, I.3
Liu, J.4
-
35
-
-
70349338871
-
Stem cells, stress, metabolism, and cancer: A drama in two Octs
-
Kang, J., Shakya, A., and Tantin, D. (2009) Stem cells, stress, metabolism, and cancer: a drama in two Octs. Trends Biochem. Sci. 34, 491-499
-
(2009)
Trends Biochem. Sci.
, vol.34
, pp. 491-499
-
-
Kang, J.1
Shakya, A.2
Tantin, D.3
-
36
-
-
0024260544
-
The POU domain: A large conserved region in the mammalian pit-1, oct-1, oct-2, and Caenorhabditis elegans unc-86 gene products
-
Herr, W., Sturm, R. A., Clerc, R. G., Corcoran, L. M., Baltimore, D., Sharp, P. A., Ingraham, H. A., Rosenfeld, M. G., Finney, M., Ruvkun, G., et al. (1988) The POU domain: a large conserved region in the mammalian pit-1, oct-1, oct-2, and Caenorhabditis elegans unc-86 gene products. Genes Dev. 2, 1513-1516
-
(1988)
Genes Dev.
, vol.2
, pp. 1513-1516
-
-
Herr, W.1
Sturm, R.A.2
Clerc, R.G.3
Corcoran, L.M.4
Baltimore, D.5
Sharp, P.A.6
Ingraham, H.A.7
Rosenfeld, M.G.8
Finney, M.9
Ruvkun, G.10
-
37
-
-
33751168064
-
Biologic properties of mesenchymal stem cells derived from bone marrow and adipose tissue
-
Izadpanah, R., Trygg, C., Patel, B., Kriedt, C., Dufour, J., Gimble, J. M., and Bunnell, B. A. (2006) Biologic properties of mesenchymal stem cells derived from bone marrow and adipose tissue. J. Cell Biochem. 99, 1285-1297
-
(2006)
J. Cell Biochem.
, vol.99
, pp. 1285-1297
-
-
Izadpanah, R.1
Trygg, C.2
Patel, B.3
Kriedt, C.4
Dufour, J.5
Gimble, J.M.6
Bunnell, B.A.7
|