Experimental study of the impact of antimicrobial treatments on Campylobacter, Enterococcus and PCR-capillary electrophoresis single-strand conformation polymorphism profiles of the gut microbiota of chickens

Journal of Medical Microbiology

Volumn 63, Issue , 2014, Pages 1552-1560

  Mourand, Gwenaë Lle ^a,b   Jouy, Eric ^a,b   Bougeard, StéPhanie ^a,b   Dheilly, Alexandra ^a,b,c   Lle Ké Rouanton, Annaë ^b   Zeitouni, Salman ^a,b,d   Kempf, Isabelle ^a,b  

^a FRENCH AGENCY FOR FOOD   (France)

^b Université Europénne de Bretagne   (France)

^c UNIVERSITÉ DE RENNES 1   (France)

^d Thermo Fisher Scientific   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMOXICILLIN; AMPICILLIN; CHLORAMPHENICOL; CLINDAMYCIN; DNA TOPOISOMERASE (ATP HYDROLYSING) A; ENROFLOXACIN; ERYTHROMYCIN; GENTAMICIN; KANAMYCIN; LINCOMYCIN; OXYTETRACYCLINE; PRISTINAMYCIN; STREPTOMYCIN; SULFADIMETHOXINE; TETRACYCLINE; THREONINE; VANCOMYCIN; ANTIINFECTIVE AGENT; RNA 16S; TRANSCRIPTOME;

ANIMAL EXPERIMENT; ANIMAL MODEL; ANTIBIOTIC SENSITIVITY; ANTIMICROBIAL THERAPY; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; BROILER; CAMPYLOBACTER COLI; CAMPYLOBACTER JEJUNI; CAPILLARY ELECTROPHORESIS; CHICKEN; CONTINUOUS INFUSION; CONTROLLED STUDY; ENTEROCOCCUS FAECALIS; ENTEROCOCCUS FAECIUM; EXPERIMENTAL STUDY; GENE MUTATION; INTESTINE FLORA; MINIMUM INHIBITORY CONCENTRATION; NONHUMAN; RECOMMENDED DRUG DOSE; SINGLE STRAND CONFORMATION POLYMORPHISM; VANCOMYCIN RESISTANT ENTEROCOCCUS; ANIMAL; ANTIBIOTIC RESISTANCE; CAMPYLOBACTER; DRUG EFFECTS; ENTEROCOCCUS; FECES; GASTROINTESTINAL TRACT; GENETIC POLYMORPHISM; GENETICS; METABOLISM; MICROBIAL SENSITIVITY TEST; MICROBIOLOGY; POLYMERASE CHAIN REACTION; PROCEDURES; VETERINARY;

ANIMALS; ANTI-BACTERIAL AGENTS; CAMPYLOBACTER; CHICKENS; DRUG RESISTANCE, BACTERIAL; ELECTROPHORESIS, CAPILLARY; ENTEROCOCCUS; FECES; GASTROINTESTINAL TRACT; MICROBIAL SENSITIVITY TESTS; POLYMERASE CHAIN REACTION; POLYMORPHISM, GENETIC; RNA, RIBOSOMAL, 16S; TRANSCRIPTOME;

EID: 84908334754     PISSN: 00222615     EISSN: None     Source Type: Journal    
DOI: 10.1099/jmm.0.074476-0     Document Type: Article

References (33)

1. ANSES (2010). FARM 2007-2008. French Antimicrobial Resistance Monitoring Program for Bacteria of Animal Origin. Report 2007- 2008. https://www.anses.fr/sites/default/files/documents/SANT-Ra-FARM2008.pdf
2. Avrain, L., Vernozy-Rozand, C. & Kempf, I. (2004). Evidence for natural horizontal transfer of tetO gene between Campylobacter jejuni strains in chickens. J Appl Microbiol 97, 134-140
3. CA-SFM (2010). Comité de l’antibiogramme de la société franc¸aise de microbiologie. Recommandations 2010 (in French). http://www.sfmmicrobiologie. org/
4. Chauvin, C., Clement, C., Bruneau, M. & Pommeret, D. (2007). Timepatterns of antibiotic exposure in poultry production - a Markov chains exploratory study of nature and consequences. Prev Vet Med80, 230-240
5. CLSI (2008). Performance Standards for Antimicrobial Disk and Dilution Susceptibility Tests for Bacteria Isolated from Animals; Approved Standard, 3rd edn, M31-A3. Wayne, PA: Clinical andLaboratory Standards Institute
6. Delbé s, C., Moletta, R. & Godon, J. (2001). Bacterial and archaeal 16S rDNA and 16S rRNA dynamics during an acetate crisis in an anaerobic digestor ecosystem. FEMS Microbiol Ecol 35, 19-26
7. Denis, M., Soumet, C., Rivoal, K., Ermel, G., Blivet, D., Salvat, G. & Colin, P. (1999). Development of a m-PCR assay for simultaneous identification of Campylobacter jejuni and C. coli. Lett Appl Microbiol29, 406-410
8. Depardieu, F., Perichon, B. & Courvalin, P. (2004). Detection of the van alphabet and identification of enterococci and staphylococci at the species level by multiplex PCR. J Clin Microbiol 42, 5857-5860
9. Dheilly, A., Bouder, A., Le Devendec, L., Hellard, G. & Kempf, I. (2011). Clinical and microbial efficacy of antimicrobial treatments of experimental avian colibacillosis. Vet Microbiol 149, 422-429
10. Dheilly, A., Le Devendec, L., Mourand, G., Bouder, A., Jouy, E. & Kempf, I. (2012). Resistance gene transfer during treatments for experimental avian colibacillosis. Antimicrob Agents Chemother 56,189-196
11. Diarra, M. S., Silversides, F. G., Diarrassouba, F., Pritchard, J., Masson, L., Brousseau, R., Bonnet, C., Delaquis, P., Bach, S. & other authors (2007). Impact of feed supplementation with antimicrobial agents on growth performance of broiler chickens, Clostridium perfringens and Enterococcus counts, and antibiotic resistance phenotypes and distribution of antimicrobial resistance determinants in Escherichia coli isolates. Appl Environ Microbiol 73, 6566-6576
12. El-Shibiny, A., Connerton, P. L. & Connerton, I. F. (2007). Campylobacter succession in broiler chickens. Vet Microbiol 125, 323-332
13. Fairchild, A. S., Smith, J. L., Idris, U., Lu, J., Sanchez, S., Purvis, L. B., Hofacre, C. & Lee, M. D. (2005). Effects of orally administered tetracycline on the intestinal community structure of chickens and on tet determinant carriage by commensal bacteria and Campylobacter jejuni. Appl Environ Microbiol 71, 5865-5872
14. Fantin, B., Duval, X., Massias, L., Alavoine, L., Chau, F., Retout, S., Andremont, A. & Mentré, F. (2009). Ciprofloxacin dosage and emergence of resistance in human commensal bacteria. J Infect Dis 200, 390-398
15. Griggs, D. J., Johnson, M. M., Frost, J. A., Humphrey, T., Jørgensen, F. & Piddock, L. J. V. (2005). Incidence and mechanism of ciprofloxacin resistance in Campylobacter spp. isolated from commercial poultry flocks in the United Kingdom before, during, and after fluoroquinolone treatment. Antimicrob Agents Chemother 49, 699-707
16. Hunter, P. R. & Gaston, M. A. (1988). Numerical index of the discriminatory ability of typing systems: an application of Simpson’s index of diversity. J Clin Microbiol 26, 2465-2466
17. Inglis, G. D., Morck, D. W., McAllister, T. A., Entz, T., Olson, M. E., Yanke, L. J. & Read, R. R. (2006). Temporal prevalence of antimicrobial resistance in Campylobacter spp. from beef cattle in Alberta feedlots. Appl Environ Microbiol 72, 4088-4095
18. Julien, C., Marden, J. P., Bonnefont, C., Moncoulon, R., Auclair, E., Monteils, V. & Bayourthe, C. (2010). Effects of varying proportions of concentrates on ruminal-reducing power and bacterial community structure in dry dairy cows fed hay-based diets. Animal 4, 1641-1646
19. Leblanc-Maridor, M., Beaudeau, F., Seegers, H., Denis, M. & Belloc, C. (2011a). Rapid identification and quantification of Campylobacter coli and Campylobacter jejuni by real-time PCR in pure cultures and in complex samples. BMC Microbiol 11, 113
20. Leblanc-Maridor, M., Garé naux, A., Beaudeau, F., Chidaine, B., Seegers, H., Denis, M. & Belloc, C. (2011b). Quantification of Campylobacter spp. in pig feces by direct real-time PCR with an internal control of extraction and amplification. J Microbiol Methods 85, 53-61
21. Liang, K. Y. & Zeger, S. L. (1986). Longitudinal data analysis using generalized linear models. Biometrika 73, 13-22
22. Looft, T., Johnson, T. A., Allen, H. K., Bayles, D. O., Alt, D. P., Stedtfeld, R. D., Sul, W. J., Stedtfeld, T. M., Chai, B. & other authors (2012). In-feed antibiotic effects on the swine intestinal microbiome. Proc Natl Acad Sci U S A 109, 1691-1696
23. Martins da Costa, P., Bica, A., Vaz-Pires, P. & Bernardo, F. (2008). Effects of antimicrobial treatment on selection of resistant Escherichia coli in broiler fecal flora. Microb Drug Resist 14, 299-306
24. Martins da Costa, P., Belo A., Gonc alves J. & Bernardo F. (2009). Field trial evaluating changes in prevalence and patterns of antimicrobial resistance among Escherichia coli and Enterococcus spp. isolated from growing broilers medicated with enrofloxacin, apramycin and amoxicillin. Vet Microbiol 139, 284-292
25. Michelland, R. J., Combes, S., Monteils, V., Cauquil, L., Gidenne, T. & Fortun-Lamothe, L. (2011). Rapid adaptation of the bacterial community in the growing rabbit caecum after a change in dietary fibre supply. Animal 5, 1761-1768
26. Peu, P., Brugé re, H., Pourcher, A. M., Ké rouré dan, M., Godon, J. J., Delgené s J. P. & Dabert P. (2006). Dynamics of a pig slurry microbial community during anaerobic storage and management. Appl Environ Microbiol 72, 3578-3585
27. Pissavin, C., Burel, C., Gabriel, I., Beven, V., Mallet, S., Maurice, R., Queguiner, M., Lessire, M. & Fravalo, P. (2012). Capillary electrophoresis single-strand conformation polymorphism for the monitoring of gastrointestinal microbiota of chicken flocks. Poult Sci 91, 2294-2304
28. Poole, T. L., Suchodolski, J. S., Callaway, T. R., Farrow, R. L., Loneragan, G. H. & Nisbet, D. J. (2013). The effect of chlortetracycline on faecal microbial populations in growing swine. J Global Antimic Resist 1, 171-174
29. Roberts, M. C., Pang, Y., Riley, D. E., Hillier, S. L., Berger, R. C. & Krieger, J. N. (1993). Detection of Tet M and Tet O tetracycline resistance genes by polymerase chain reaction. Mol Cell Probes 7, 387- 393
30. Simpson, E. H. (1949). Measurement of diversity. Nature 163, 688
31. Tenover F C., Williams S., Gordon K. P., Nolan C. & Plorde J. J. (1985). Survey of plasmids and resistance factors in Campylobacter jejuni and Campylobacter coli. Antimicrob Agents Chemother 27, 37-41
32. Waché, Y. J., Valat, C., Postollec, G., Bougeard, S., Burel, C., Oswald, I. P. & Fravalo, P. (2009). Impact of deoxynivalenol on the intestinal microflora of pigs. Int J Mol Sci 10, 1-17
33. Zeitouni, S. & Kempf, I. (2011). Fitness cost of fluoroquinolone resistance in Campylobacter coli and Campylobacter jejuni. Microb Drug Resist 17, 171-179