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Volumn 10, Issue 10, 2014, Pages

Dominant Sequences of Human Major Histocompatibility Complex Conserved Extended Haplotypes from HLA-DQA2 to DAXX

Author keywords

[No Author keywords available]

Indexed keywords

DNA; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 2; DAXX PROTEIN, HUMAN; HLA DP ANTIGEN; HLA DQ ANTIGEN; HLA-DPB1 ANTIGEN; HLA-DQA2 ANTIGEN; HLA-DQB1 ANTIGEN; NUCLEAR PROTEIN; SIGNAL TRANSDUCING ADAPTOR PROTEIN;

EID: 84908333095     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1004637     Document Type: Article
Times cited : (15)

References (36)
  • 1
    • 0020688126 scopus 로고
    • Extended HLA/complement allele haplotypes: evidence for T/t-like complex in man
    • Awdeh ZL, Raum D, Yunis EJ, Alper CA, (1983) Extended HLA/complement allele haplotypes: evidence for T/t-like complex in man. Proc Natl Acad Sci USA 80: 259–263.
    • (1983) Proc Natl Acad Sci USA , vol.80 , pp. 259-263
    • Awdeh, Z.L.1    Raum, D.2    Yunis, E.J.3    Alper, C.A.4
  • 2
    • 0021151532 scopus 로고
    • Extended major histocompatibility complex haplotypes in type I diabetes mellitus
    • Raum D, Awdeh Z, Yunis EJ, Alper CA, Gabbay KH, (1984) Extended major histocompatibility complex haplotypes in type I diabetes mellitus. J Clin Invest 74: 449–454.
    • (1984) J Clin Invest , vol.74 , pp. 449-454
    • Raum, D.1    Awdeh, Z.2    Yunis, E.J.3    Alper, C.A.4    Gabbay, K.H.5
  • 3
    • 0042165029 scopus 로고    scopus 로고
    • Inheritable variable sizes of DNA stretches in the human MHC: conserved extended haplotypes and their fragments or blocks
    • Yunis EJ, Larsen CE, Fernandez-Vina M, Awdeh ZL, Romero T, et al. (2003) Inheritable variable sizes of DNA stretches in the human MHC: conserved extended haplotypes and their fragments or blocks. Tissue Antigens 62: 1–20.
    • (2003) Tissue Antigens , vol.62 , pp. 1-20
    • Yunis, E.J.1    Larsen, C.E.2    Fernandez-Vina, M.3    Awdeh, Z.L.4    Romero, T.5
  • 4
    • 33646358249 scopus 로고    scopus 로고
    • The haplotype structure of the human major histocompatibility complex
    • Alper CA, Larsen CE, Dubey DP, Awdeh ZL, Fici DA, et al. (2006) The haplotype structure of the human major histocompatibility complex. Hum Immunol 67: 73–84.
    • (2006) Hum Immunol , vol.67 , pp. 73-84
    • Alper, C.A.1    Larsen, C.E.2    Dubey, D.P.3    Awdeh, Z.L.4    Fici, D.A.5
  • 6
    • 0032958440 scopus 로고    scopus 로고
    • Genomics of the major histocompatibility complex: haplotypes, duplication, retroviruses and disease
    • Dawkins R, Leelayuwat C, Gaudieri S, Tay G, Hui J, et al. (1999) Genomics of the major histocompatibility complex: haplotypes, duplication, retroviruses and disease. Immunol Rev 167: 275–304.
    • (1999) Immunol Rev , vol.167 , pp. 275-304
    • Dawkins, R.1    Leelayuwat, C.2    Gaudieri, S.3    Tay, G.4    Hui, J.5
  • 7
    • 0020531266 scopus 로고
    • Serum complement ‘supergenes’ of the major histocompatibility complex in man (complotypes)
    • Alper CA, Raum D, Karp S, Awdeh ZL, Yunis EJ, (1983) Serum complement ‘supergenes’ of the major histocompatibility complex in man (complotypes). Vox Sang 45: 62–67.
    • (1983) Vox Sang , vol.45 , pp. 62-67
    • Alper, C.A.1    Raum, D.2    Karp, S.3    Awdeh, Z.L.4    Yunis, E.J.5
  • 9
    • 33745326638 scopus 로고    scopus 로고
    • Multi-SNP analysis of MHC region: remarkable conservation of HLA-A1-B8-DR3 haplotype
    • Aly TA, Eller E, Ide A, Gowan K, Babu SR, et al. (2006) Multi-SNP analysis of MHC region: remarkable conservation of HLA-A1-B8-DR3 haplotype. Diabetes 55: 1265–1269.
    • (2006) Diabetes , vol.55 , pp. 1265-1269
    • Aly, T.A.1    Eller, E.2    Ide, A.3    Gowan, K.4    Babu, S.R.5
  • 10
    • 33646115801 scopus 로고    scopus 로고
    • Toward understanding MHC disease associations: partial resequencing of 46 distinct HLA haplotypes
    • Smith WP, Vu Q, Li SS, Hansen JA, Zhao LP, et al. (2006) Toward understanding MHC disease associations: partial resequencing of 46 distinct HLA haplotypes. Genomics 87: 561–571.
    • (2006) Genomics , vol.87 , pp. 561-571
    • Smith, W.P.1    Vu, Q.2    Li, S.S.3    Hansen, J.A.4    Zhao, L.P.5
  • 11
    • 33750423384 scopus 로고    scopus 로고
    • Conserved extended haplotypes discriminate HLA-DR3-homozygous Basque patients with type 1 diabetes mellitus and celiac disease
    • Bilbao JR, Calvo B, Aransay AM, Martin-Pagola A, Perez de Nanclares G, et al. (2006) Conserved extended haplotypes discriminate HLA-DR3-homozygous Basque patients with type 1 diabetes mellitus and celiac disease. Genes Immun 7: 550–554.
    • (2006) Genes Immun , vol.7 , pp. 550-554
    • Bilbao, J.R.1    Calvo, B.2    Aransay, A.M.3    Martin-Pagola, A.4    Perez De Nanclares, G.5
  • 12
    • 0025328990 scopus 로고
    • Differences in gene copy number carried by different MHC ancestral haplotypes. Quantitation after physical separation of haplotypes by pulsed field gel electrophoresis
    • Zhang WJ, Degli-Esposti MA, Cobain TJ, Cameron PU, Christiansen FT, et al. (1990) Differences in gene copy number carried by different MHC ancestral haplotypes. Quantitation after physical separation of haplotypes by pulsed field gel electrophoresis. J Exp Med 171: 2101–2114.
    • (1990) J Exp Med , vol.171 , pp. 2101-2114
    • Zhang, W.J.1    Degli-Esposti, M.A.2    Cobain, T.J.3    Cameron, P.U.4    Christiansen, F.T.5
  • 13
    • 0026093774 scopus 로고
    • Extensive genetic polymorphism in the human tumor necrosis factor region and relation to extended HLA haplotypes
    • Jongeneel CV, Briant L, Udalova IA, Sevin A, Nedospasov SA, et al. (1991) Extensive genetic polymorphism in the human tumor necrosis factor region and relation to extended HLA haplotypes. Proc Natl Acad Sci USA 88: 9717–9721.
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 9717-9721
    • Jongeneel, C.V.1    Briant, L.2    Udalova, I.A.3    Sevin, A.4    Nedospasov, S.A.5
  • 14
    • 34247350378 scopus 로고    scopus 로고
    • Genetic fixity in the human major histocompatibility complex and block size diversity in the class I region including HLA-E
    • Romero V, Larsen CE, Duke-Cohan JS, Fox EA, Romero T, et al. (2007) Genetic fixity in the human major histocompatibility complex and block size diversity in the class I region including HLA-E. BMC Genet 8: 14.
    • (2007) BMC Genet , vol.8 , pp. 14
    • Romero, V.1    Larsen, C.E.2    Duke-Cohan, J.S.3    Fox, E.A.4    Romero, T.5
  • 15
    • 0027405172 scopus 로고
    • HLA-DQA1, DQB1 and DPB1 alleles on HLA-DQ2- and DQ9-carrying extended haplotypes
    • Yunis JJ, Salazar M, Delgado MB, Alper CA, Bing DH, et al. (1993) HLA-DQA1, DQB1 and DPB1 alleles on HLA-DQ2- and DQ9-carrying extended haplotypes. Tissue Antigens 41: 37–41.
    • (1993) Tissue Antigens , vol.41 , pp. 37-41
    • Yunis, J.J.1    Salazar, M.2    Delgado, M.B.3    Alper, C.A.4    Bing, D.H.5
  • 16
    • 10744231228 scopus 로고    scopus 로고
    • HLA-Cw*0409N is associated with HLA-A*2301 and HLA-B*4403-carrying haplotypes
    • Pinto C, Smith AG, Larsen CE, Fernández-Viña M, Husain Z, et al. (2004) HLA-Cw*0409N is associated with HLA-A*2301 and HLA-B*4403-carrying haplotypes. Hum Immunol 65: 181–187.
    • (2004) Hum Immunol , vol.65 , pp. 181-187
    • Pinto, C.1    Smith, A.G.2    Larsen, C.E.3    Fernández-Viña, M.4    Husain, Z.5
  • 19
    • 33645775299 scopus 로고    scopus 로고
    • Genetic analysis of completely sequenced disease-associated MHC haplotypes identifies shuffling of segments in recent human history
    • Traherne JA, Horton R, Roberts AN, Miretti MM, Hurles ME, et al. (2006) Genetic analysis of completely sequenced disease-associated MHC haplotypes identifies shuffling of segments in recent human history. PLoS Genet 2: e9.
    • (2006) PLoS Genet , vol.2 , pp. e9
    • Traherne, J.A.1    Horton, R.2    Roberts, A.N.3    Miretti, M.M.4    Hurles, M.E.5
  • 20
    • 38349100266 scopus 로고    scopus 로고
    • Variation analysis and gene annotation of eight MHC haplotypes: The MHC Haplotype Project
    • Horton R, Gibson R, Coggill P, Miretti M, Allcock RJ, et al. (2008) Variation analysis and gene annotation of eight MHC haplotypes: The MHC Haplotype Project. Immunogenet 60: 1–18.
    • (2008) Immunogenet , vol.60 , pp. 1-18
    • Horton, R.1    Gibson, R.2    Coggill, P.3    Miretti, M.4    Allcock, R.J.5
  • 21
    • 77952546708 scopus 로고    scopus 로고
    • Frequent occurrence of conserved extended haplotypes (CEHs) in two Caucasian populations
    • Szilágyi Á, Bánlaki Z, Pozsonyi É, Yunis EJ, Awdeh ZL, et al. (2010) Frequent occurrence of conserved extended haplotypes (CEHs) in two Caucasian populations. Mol Immunol 47: 1899–1904.
    • (2010) Mol Immunol , vol.47 , pp. 1899-1904
    • Szilágyi, Á.1    Bánlaki, Z.2    Pozsonyi, É.3    Yunis, E.J.4    Awdeh, Z.L.5
  • 22
    • 0036783307 scopus 로고    scopus 로고
    • High-resolution patterns of meiotic recombination across the human major histocompatibility complex
    • Cullen M, Perfetto SP, Klitz W, Nelson G, Carrington M, (2002) High-resolution patterns of meiotic recombination across the human major histocompatibility complex. Am J Hum Genet 71: 759–776.
    • (2002) Am J Hum Genet , vol.71 , pp. 759-776
    • Cullen, M.1    Perfetto, S.P.2    Klitz, W.3    Nelson, G.4    Carrington, M.5
  • 23
    • 0034795550 scopus 로고    scopus 로고
    • Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex
    • Jeffreys AJ, Kauppi L, Neumann R, (2001) Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex. Nat Genet 29: 217–222.
    • (2001) Nat Genet , vol.29 , pp. 217-222
    • Jeffreys, A.J.1    Kauppi, L.2    Neumann, R.3
  • 24
    • 20144388362 scopus 로고    scopus 로고
    • A high-resolution linkage-disequilibrium map of the human major histocompatibility complex and first generation of tag single-nucleotide polymorphisms
    • Miretti MM, Walsh EC, Ke X, Delgado M, Griffiths M, et al. (2005) A high-resolution linkage-disequilibrium map of the human major histocompatibility complex and first generation of tag single-nucleotide polymorphisms. Am J Hum Genet 76: 634–646.
    • (2005) Am J Hum Genet , vol.76 , pp. 634-646
    • Miretti, M.M.1    Walsh, E.C.2    Ke, X.3    Delgado, M.4    Griffiths, M.5
  • 25
    • 67649979852 scopus 로고    scopus 로고
    • Defining multiple common “completely” conserved major histocompatibility complex SNP haplotypes
    • Baschal EE, Aly TA, Jasinski JM, Steck AK, Noble JA, et al. (2009) Defining multiple common “completely” conserved major histocompatibility complex SNP haplotypes. Clin Immunol 132: 203–214.
    • (2009) Clin Immunol , vol.132 , pp. 203-214
    • Baschal, E.E.1    Aly, T.A.2    Jasinski, J.M.3    Steck, A.K.4    Noble, J.A.5
  • 26
    • 0027382379 scopus 로고
    • Characterization of type I complement C2 deficiency MHC haplotypes. Strong conservation of the complotype/HLA-B-region and absence of disease association due to linked class II genes
    • Sjöholm
    • Truedsson L, Alper CA, Awdeh ZL, Johansen P, Sjöholm, et al, (1993) Characterization of type I complement C2 deficiency MHC haplotypes. Strong conservation of the complotype/HLA-B-region and absence of disease association due to linked class II genes. J Immunol 151: 5856–5863.
    • (1993) J Immunol , vol.151 , pp. 5856-5863
    • Truedsson, L.1    Alper, C.A.2    Awdeh, Z.L.3    Johansen, P.4
  • 29
    • 77951799158 scopus 로고    scopus 로고
    • Analysis of genetic inheritance in a family quartet by whole-genome sequencing
    • Roach JC, Glusman G, Smit AFA, Huff CD, Hubley R, et al. (2010) Analysis of genetic inheritance in a family quartet by whole-genome sequencing. Science 328: 636–639.
    • (2010) Science , vol.328 , pp. 636-639
    • Roach, J.C.1    Glusman, G.2    Smit, A.F.A.3    Huff, C.D.4    Hubley, R.5
  • 31
    • 0002840708 scopus 로고
    • Description of the reference panel of B-lymphoblastoid cell lines for factors of the HLA system: The B-cell line panel designed for the tenth International Histocompatibility Workshop. In Dupont B, editor. Immunobiology of HLA, Volume 1. Histocompatibility testing
    • Yang SY, Milford E, Hämmerling U, Dupont B (1987) Description of the reference panel of B-lymphoblastoid cell lines for factors of the HLA system: The B-cell line panel designed for the tenth International Histocompatibility Workshop. In Dupont B, editor. Immunobiology of HLA, Volume 1. Histocompatibility testing. Berlin: Springer-Verlag. pp.11–19.
    • (1987) Berlin: Springer-Verlag , pp. 11-19
    • Yang, S.Y.1    Milford, E.2    Hämmerling, U.3    Dupont, B.4
  • 32
    • 33748302972 scopus 로고    scopus 로고
    • Conserved extended haplotypes of the major histocompatibility complex: further characterization
    • Dorak MT, Shao W, Machulla HKG, Lobashevsky ES, Tang J, et al. (2006) Conserved extended haplotypes of the major histocompatibility complex: further characterization. Genes Immun 7: 450–467.
    • (2006) Genes Immun , vol.7 , pp. 450-467
    • Dorak, M.T.1    Shao, W.2    Machulla, H.K.G.3    Lobashevsky, E.S.4    Tang, J.5
  • 33
    • 80053019891 scopus 로고    scopus 로고
    • Haplotype phasing: existing methods and new developments
    • Browning SR, Browning BL, (2011) Haplotype phasing: existing methods and new developments. Nat Rev Genet 12: 703–714.
    • (2011) Nat Rev Genet , vol.12 , pp. 703-714
    • Browning, S.R.1    Browning, B.L.2
  • 34
    • 84884527979 scopus 로고    scopus 로고
    • HLA class I and class II conserved extended haplotypes and their fragments or blocks in Mexicans: implications for the study of genetic diversity in admixed populations
    • Zúñiga J, Yu N, Barquera R, Alosco S, Ohashi M, et al. (2013) HLA class I and class II conserved extended haplotypes and their fragments or blocks in Mexicans: implications for the study of genetic diversity in admixed populations. PLoS ONE 8: e74442.
    • (2013) PLoS ONE , vol.8 , pp. e74442
    • Zúñiga, J.1    Yu, N.2    Barquera, R.3    Alosco, S.4    Ohashi, M.5
  • 35
    • 13244296644 scopus 로고    scopus 로고
    • The basic lymphocyte microcytotoxicity tests: standard and AHG enhancement
    • Hahn AB, Land GA, Strothman RM, editors.ASHI laboratory manual.Volume, 4th edition
    • Hopkins KA (2000) The basic lymphocyte microcytotoxicity tests: standard and AHG enhancement. In: Hahn AB, Land GA, Strothman RM, editors.ASHI laboratory manual.Volume 1. 4th edition.Lenexa KS: American Society for Histocompatibility and Immunogenetics. pp.1–7.
    • (2000) Lenexa KS: American Society for Histocompatibility and Immunogenetics , vol.1 , pp. 1-7
    • Hopkins, K.A.1
  • 36
    • 0002472558 scopus 로고
    • Methods for allotyping complement proteins
    • Rose NR, de Macario EC, Fahey JL, Friedman H, Penn GM, editors, 4th edition. Washington DC: American Society for Microbiology
    • Marcus-Bagley D, Alper CA (1992) Methods for allotyping complement proteins. In: Rose NR, de Macario EC, Fahey JL, Friedman H, Penn GM, editors. Manual of clinical laboratory immunology. 4th edition. Washington DC: American Society for Microbiology. pp.124–141.
    • (1992) Manual of clinical laboratory immunology , pp. 124-141
    • Marcus-Bagley, D.1    Alper, C.A.2


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