HLA-Cw*0409N is associated with HLA-A*2301 and HLA-B*4403-carrying haplotypes

Human Immunology

Volumn 65, Issue 2, 2004, Pages 181-187

  Pinto, C ^a   Smith, A G ^b   Larsen, C E ^a,d   Fernandez Vina M ^c   Husain, Z ^a   Clavijo, O P ^a   Wang, Z C ^a   Nisperos, B ^b   Hansen, J A ^b   Alper, C A ^a   Yunis, E J ^a,e  

^a HARVARD MEDICAL SCHOOL   (United States)

^b Fred Hutchinson Cancer Research Center   (United States)

^c GEORGETOWN UNIVERSITY   (United States)

^d CENTER FOR BLOOD RESEARCH   (United States)

^e DANA FARBER CANCER INSTITUTE   (United States)

Author keywords

0409N; Allele frequency; Cw; HLA null allele; Major histocompatibility complex; Polymorphism (genetics)

Indexed keywords

HLA A ANTIGEN; HLA ANTIGEN; HLA B ANTIGEN; COMPLEMENT; DNA; HLA A*2301 ANTIGEN; HLA ANTIGEN CLASS 1; HLA B*4403 ANTIGEN; HLA C ANTIGEN; HLA CW*0409N ANTIGEN; HLA-A*2301 ANTIGEN; HLA-B*4403 ANTIGEN; HLA-CW*0409N ANTIGEN;

ALLELE; ARTICLE; CONTROLLED STUDY; GENE LOCUS; GENETIC ASSOCIATION; GENETIC IDENTIFICATION; GENOTYPE; HAPLOTYPE; HOMOZYGOSITY; HUMAN; HUMAN CELL; PRIORITY JOURNAL; CAUCASIAN; CELL LINE; CHEMISTRY; CYTOLOGY; DNA SEQUENCE; GENE FREQUENCY; GENETIC POLYMORPHISM; GENETICS; HETEROZYGOTE; HOMOZYGOTE; ISOLATION AND PURIFICATION; METABOLISM; MONONUCLEAR CELL; PHENOTYPE; POLYMERASE CHAIN REACTION; UNITED STATES;

ALLELES; CELL LINE; COMPLEMENT SYSTEM PROTEINS; DNA; EUROPEAN CONTINENTAL ANCESTRY GROUP; GENE FREQUENCY; HAPLOTYPES; HETEROZYGOTE; HISTOCOMPATIBILITY ANTIGENS CLASS I; HLA-A ANTIGENS; HLA-B ANTIGENS; HLA-C ANTIGENS; HOMOZYGOTE; HUMANS; LEUKOCYTES, MONONUCLEAR; PHENOTYPE; POLYMERASE CHAIN REACTION; POLYMORPHISM, GENETIC; SEQUENCE ANALYSIS, DNA; UNITED STATES;

EID: 10744231228     PISSN: 01988859     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.humimm.2003.11.001     Document Type: Article

References (28)

1. Magor K.E., Taylor E.J., Shen S.Y., Martinez-Naves E., Valiante N.M., Wells R.S., Gumperz J.E., Adams E.J., Little A.M., Williams F., Middleton D., Gao X., McCluskey J., Parham P., Lienert-Weidenbach K. Natural inactivation of a common HLA allele (A*2402) has occurred on at least three separate occasions. J Immunol. 158:1997;5242.
2. Ishikawa Y., Tokunaga K., Tanaka H., Nishimura M., Muraoka M., Fujii Y., Akaza T., Tadokoro K., Juji T. HLA-A null allele with a stop codon, HLA-A*0215N, identified in a homozygous state in a healthy adult. Immunogenetics. 43:1996;1.
3. Lienert K., Russ G., Lester S., Bennett G., Gao X., McCluskey J. Stable inheritance of an HLA-"blank" phenotype associated with a structural mutation in the HLA-A*0301 gene. Tissue Antigens. 48:1996;187.
4. Laforet M., Froelich N., Parissiadis A., Pfeiffer B., Schell A., Faller B., Woehl-Jaegle M.-L., Cazenave J.-P., Tongio M.-M. A nucleotide insertion in exon 4 is responsible for the absence of expression of an HLA-A*01 allele. Tissue Antigens. 50:1997;347.
5. Mine H., Ischkawa Y., Hojo M., Imashuku S., Tokunaga K., Juji T., Saji H., Yokoyama S. An HLA-B null allele (B*1526N) with a stop codon in exon 3 generated by a point mutation. Tissue Antigens. 50:1997;351.
6. Williams F., Curran M.D., Middleton D. Detection of HLA-A*24 null alleles by DNA typing methods. Tissue Antigens. 52:1998;208.
7. Curran M.D., Williams F., Little A.-M., Rima B.K., Madrigal J.A., Middleton D. Aberrant splicing of intron 1 creates a novel null HLA-B*1501 allele. Tissue Antigens. 53:1999;244.
8. Laforet M., Froelich N., Parissiadis A., Schell A., Pfeiffer B., Cazenave J.-P., Tongio M.M. A null HLA-A*68 allele in a bone marrow donor. Tissue Antigens. 53:1999;573.
9. Poli F., Bianchi P., Scalamogna M., Crespiatico L., Ghidoli N., Puglisi G., Sirchia G. A nucleotide deletion in exon 4 is responsible for an HLA-A null allele (A*0105N). Tissue Antigens. 54:1999;300.
10. Bettens F., Tiercy J.-M. Sequence of a new class I null allele within the HLA-B44 specificity. Tissue Antigens. 56:2000;441.
11. Bunce M., Procter J., Dunn P.P.J., Day S., Ross J., Welsh K.I. Identification of the null HLA-A2 allele, A*0232N. Tissue Antigens. 55:2000;31.
12. Carter V., Dunn P.P.J., Cavanagh G., Day S., Ross J., Chapman C. An HLA-B null allele (B*0808N) caused by a nucleotide deletion in exon 3, found in the family of a bone marrow transplant recipient. Tissue Antigens. 55:2000;61.
13. Tamouza R., Sadki K., Schaeffer V., Carbonnelle E., Tatari Z., Chabod J., Toubert A., Raffoux C., Sayada C., Charron D. A novel HLA-B null allele (B*4022N) generated by a nonsense codon in the α1 domain. Tissue Antigens. 55:2000;378.
14. Elsner H.-A., Drábek J., Rebmann V., Ambruzova Z., Grosse-Wilde H., Blasczyk R. Non-expression of HLA-B*5111N is caused by an insertion into the cytosine island at exon 4 creating a frameshift stop codon. Tissue Antigens. 57:2001;369.
15. Balas A., Santos S., Aviles M.J., Garcia-Sánchez F., Lillo R., Alvarez A., Villar-Guimerans L.M., Vicario J.L. Elongation of the cytoplasmic domain, due to a point deletion at exon 7, results in an HLA-C null allele, Cw*0409N. Tissue Antigens. 59:2002;95.
16. Wang Z.C., Smith A.G., Yunis E.J., Selvakumar A., Ferrone S., McKinney S., Lee J.-H., Fernandez-Viña M., Hansen J.A. Molecular characterization of the HLA-Cw*0409N allele. Hum Immunol. 63:2002;295.
17. Awdeh Z.L., Raum D., Yunis E.J., Alper C.A. Extended HLA/complement allele haplotypes evidence for T/t-like complex in man . Proc Natl Acad Sci USA. 80:1983;259.
18. Yu N., Ohashi M., Alosco S., Granja C., Salazar M., Hegland J., Yunis E. Accurate typing of HLA-A antigens and analysis of serological deficiencies. Tissue Antigens. 50:1997;380. Erratum: Tissue Antigens 52:302, 1998.
19. Sadler A.M., Petronzelli F., Krausa P., Marsh S.G.E., Guttridge M.G., Browning M.J., Bodmer J.G. Low-resolution DNA typing for HLA-B using sequence-specific primers in allele- or group-specific ARMS/PCR. Tissue Antigens. 44:1994;148.
20. Bunce M., O'Neill C.M., Barnardo M.C.N.M., Krausa P., Browning M.J., Morris P.J., Welsh K.I. Phototyping comprehensive DNA typing for HLA-A, B, C, DRB1, DRB3, DRB4, DRB5 and DQB1 by PCR with 144 primer mixes utilizing sequence-specific primers (PCR-SSP) . Tissue Antigens. 46:1995;355.
21. Cao K., Chopek M., Fernandez-Viña M.A. High and intermediate resolution DNA typing systems for class I HLA-A, B, C genes by hybridization with sequence-specific oligonucleotide probes (SSOP). Rev Immunogenet. 1:1999;177.
22. th ed., vol 1. 2000;American Society for Histocompatibility and Immunogenetics, New York.
23. th ed. 1992;American Society for Microbiology, Washington, DC.
24. Alper C.A., Raum D., Karp S., Awdeh Z.L., Yunis E.J. Serum complement "supergenes" of the major histocompatibility complex in man (complotypes). Vox Sang. 45:1983;62.
25. Yunis E.J., Larsen C.E., Fernandez-Viña M., Awdeh Z.L., Romero T., Hansen J.A., Alper C.A. Inheritable variable sizes of DNA stretches in the human MHC conserved extended haplotypes and their fragment or blocks . Tissue Antigens. 62:2003;1.
26. Yunis E.J., Larsen C.E., Fernandez-Viña M., Awdeh, Z.L., Cao K., Romero T., Alper C.A., Hansen J.A. Human MHC haplotypes and their fragments or blocks. Hansen J.A., Dupont B. HLA 2002 Immunobiology of the Human MHC . 2003;IHWG Press, Seattle, WA.
27. Clavijo O.P., Delgado J.C., Awdeh Z.L., Fici D., Turbay D., Alper C.A., Truedsson L., Yunis E.J. HLA-Cw alleles associated with HLA extended haplotypes and C2 deficiency. Tissue Antigens. 52:1998;282.
28. Cao K., Hollenbach J., Shi X., Shi W., Chopek M., Fernández- Viña M.A. Analysis of the frequencies of HLA-A, B, and C alleles in the 5 major ethnic groups of the United States reveals high levels of diversity in these loci and contrasting distribution patterns in these populations. Hum Immunol. 62:2001;1009.