메뉴 건너뛰기




Volumn 10, Issue 10, 2014, Pages

Functional Interaction between Ribosomal Protein L6 and RbgA during Ribosome Assembly

Author keywords

[No Author keywords available]

Indexed keywords

GUANOSINE TRIPHOSPHATASE; PROTEIN RBGA; RIBOSOMAL PROTEIN L6; RIBOSOME PROTEIN; RNA 23S; UNCLASSIFIED DRUG; BACTERIAL PROTEIN; RIBOSOMAL PROTEIN L16;

EID: 84908322596     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1004694     Document Type: Article
Times cited : (21)

References (51)
  • 1
  • 2
    • 34250377197 scopus 로고    scopus 로고
    • The weird and wonderful world of bacterial ribosome regulation
    • Wilson DN, Nierhaus KH, (2007) The weird and wonderful world of bacterial ribosome regulation. Crit Rev Biochem Mol Biol 42: 187–219.
    • (2007) Crit Rev Biochem Mol Biol , vol.42 , pp. 187-219
    • Wilson, D.N.1    Nierhaus, K.H.2
  • 3
    • 0025912715 scopus 로고
    • The assembly of prokaryotic ribosomes
    • Nierhaus KH, (1991) The assembly of prokaryotic ribosomes. Biochimie 73: 739–755.
    • (1991) Biochimie , vol.73 , pp. 739-755
    • Nierhaus, K.H.1
  • 4
    • 0006002144 scopus 로고
    • Assembly map of the large subunit (50S) of Escherichia coli ribosomes
    • Rohl R, Nierhaus K, (1982) Assembly map of the large subunit (50S) of Escherichia coli ribosomes. Proc Natl Acad Sci U S A 79: 729–733.
    • (1982) Proc Natl Acad Sci U S A , vol.79 , pp. 729-733
    • Rohl, R.1    Nierhaus, K.2
  • 5
    • 0014958174 scopus 로고
    • Reconstitution of 50S ribosomal subunits from dissociated molecular components
    • Nomura M, Erdmann VA, (1970) Reconstitution of 50S ribosomal subunits from dissociated molecular components. Nature 228: 744–748.
    • (1970) Nature , vol.228 , pp. 744-748
    • Nomura, M.1    Erdmann, V.A.2
  • 6
    • 0015776659 scopus 로고
    • Reconstitution of 50S ribosomal subunits and the role of 5S RNA
    • Nomura M, Fahnestock S, (1973) Reconstitution of 50S ribosomal subunits and the role of 5S RNA. Basic Life Sci 1: 241–250.
    • (1973) Basic Life Sci , vol.1 , pp. 241-250
    • Nomura, M.1    Fahnestock, S.2
  • 8
    • 0032972963 scopus 로고    scopus 로고
    • Reconstitution of functional 50S ribosomes from in vitro transcripts of Bacillus stearothermophilus 23S rRNA
    • Green R, Noller HF, (1999) Reconstitution of functional 50S ribosomes from in vitro transcripts of Bacillus stearothermophilus 23S rRNA. Biochemistry 38: 1772–1779.
    • (1999) Biochemistry , vol.38 , pp. 1772-1779
    • Green, R.1    Noller, H.F.2
  • 9
    • 78049406997 scopus 로고    scopus 로고
    • Visualizing Ribosome Biogenesis: Parallel Assembly Pathways for the 30S Subunit
    • Mulder AM, Yoshioka Craig, Beck Andrea H, Bunner Anne E, Milligan Ronald A, et al. (2010) Visualizing Ribosome Biogenesis: Parallel Assembly Pathways for the 30S Subunit. Science 330: 673–677.
    • (2010) Science , vol.330 , pp. 673-677
    • Mulder, A.M.1    Yoshioka, C.2    Beck, A.H.3    Bunner, A.E.4    Milligan, R.A.5
  • 10
    • 84876396559 scopus 로고    scopus 로고
    • Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM and general features of the assembly process
    • Guo Q, Goto Simon, Chen Yuling, Feng Boya, Xu Yanji, et al. (2013) Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM and general features of the assembly process. Nucleic Acids Res 41: 2609–2620.
    • (2013) Nucleic Acids Res , vol.41 , pp. 2609-2620
    • Guo, Q.1    Goto, S.2    Chen, Y.3    Feng, B.4    Xu, Y.5
  • 11
    • 77957754593 scopus 로고    scopus 로고
    • Quantitative Proteomic Analysis of Ribosome Assembly and Turnover in Vivo
    • Sykes MT, Shajani Z, Sperling E, Beck AH, Williamson JR, (2010) Quantitative Proteomic Analysis of Ribosome Assembly and Turnover in Vivo. J Mol Biol 403: 331–345.
    • (2010) J Mol Biol , vol.403 , pp. 331-345
    • Sykes, M.T.1    Shajani, Z.2    Sperling, E.3    Beck, A.H.4    Williamson, J.R.5
  • 12
    • 70349557671 scopus 로고    scopus 로고
    • Role of GTPases in bacterial ribosome assembly
    • Britton RA, (2009) Role of GTPases in bacterial ribosome assembly. Annu Rev Microbiol 63: 155–176.
    • (2009) Annu Rev Microbiol , vol.63 , pp. 155-176
    • Britton, R.A.1
  • 13
    • 65549161515 scopus 로고    scopus 로고
    • Deconstructing ribosome construction
    • Connolly K, Culver G, (2009) Deconstructing ribosome construction. Trends Biochem Sci 34: 256–263.
    • (2009) Trends Biochem Sci , vol.34 , pp. 256-263
    • Connolly, K.1    Culver, G.2
  • 15
    • 73249132431 scopus 로고    scopus 로고
    • Powering through ribosome assembly
    • Strunk BS, Karbstein K, (2009) Powering through ribosome assembly. Rna 15: 2083–2104.
    • (2009) Rna , vol.15 , pp. 2083-2104
    • Strunk, B.S.1    Karbstein, K.2
  • 16
    • 33645050402 scopus 로고    scopus 로고
    • The essential GTPase RbgA (YlqF) is required for 50S ribosome assembly in Bacillus subtilis
    • Uicker WC, Schaefer L, Britton RA, (2006) The essential GTPase RbgA (YlqF) is required for 50S ribosome assembly in Bacillus subtilis. Mol Microbiol 59: 528–540.
    • (2006) Mol Microbiol , vol.59 , pp. 528-540
    • Uicker, W.C.1    Schaefer, L.2    Britton, R.A.3
  • 17
    • 33646371247 scopus 로고    scopus 로고
    • The GTP-binding protein YlqF participates in the late step of 50 S ribosomal subunit assembly in Bacillus subtilis
    • Matsuo Y, Morimoto T, Kuwano M, Loh PC, Oshima T, et al. (2006) The GTP-binding protein YlqF participates in the late step of 50 S ribosomal subunit assembly in Bacillus subtilis. J Biol Chem 281: 8110–8117.
    • (2006) J Biol Chem , vol.281 , pp. 8110-8117
    • Matsuo, Y.1    Morimoto, T.2    Kuwano, M.3    Loh, P.C.4    Oshima, T.5
  • 18
    • 84876035699 scopus 로고    scopus 로고
    • Human G-proteins, ObgH1 and Mtg1, associate with the large mitochondrial ribosome subunit and are involved in translation and assembly of respiratory complexes
    • Kotani T, Akabane Shiori, Takeyasu Kunio, Ueda Takuya, Takeuchi N, (2013) Human G-proteins, ObgH1 and Mtg1, associate with the large mitochondrial ribosome subunit and are involved in translation and assembly of respiratory complexes. Nucleic Acids Res 41: 3713–3722.
    • (2013) Nucleic Acids Res , vol.41 , pp. 3713-3722
    • Kotani, T.1    Akabane, S.2    Takeyasu, K.3    Ueda, T.4    Takeuchi, N.5
  • 19
    • 0038316568 scopus 로고    scopus 로고
    • The putative GTPases Nog1p and Lsg1p are required for 60S ribosomal subunit biogenesis and are localized to the nucleus and cytoplasm, respectively
    • Kallstrom G, Hedges J, Johnson A, (2003) The putative GTPases Nog1p and Lsg1p are required for 60S ribosomal subunit biogenesis and are localized to the nucleus and cytoplasm, respectively. Mol Cell Biol 23: 4344–4355.
    • (2003) Mol Cell Biol , vol.23 , pp. 4344-4355
    • Kallstrom, G.1    Hedges, J.2    Johnson, A.3
  • 20
    • 33747729420 scopus 로고    scopus 로고
    • The NUG1 GTPase reveals and N-terminal RNA-binding domain that is essential for association with 60 S pre-ribosomal particles
    • Bassler J, Kallas M, Hurt E, (2006) The NUG1 GTPase reveals and N-terminal RNA-binding domain that is essential for association with 60 S pre-ribosomal particles. J Biol Chem 281: 24737–24744.
    • (2006) J Biol Chem , vol.281 , pp. 24737-24744
    • Bassler, J.1    Kallas, M.2    Hurt, E.3
  • 21
    • 79953128224 scopus 로고    scopus 로고
    • Nuclear/nucleolar GTPase 2 proteins as a subfamily of YlqF/YawG GTPases function in pre-60S ribosomal subunit maturation of mono- and dicotyledonous plants
    • Im CH, Hwang SM, Son YS, Heo JB, Bang WY, et al. (2011) Nuclear/nucleolar GTPase 2 proteins as a subfamily of YlqF/YawG GTPases function in pre-60S ribosomal subunit maturation of mono- and dicotyledonous plants. J Biol Chem 286: 8620–8632.
    • (2011) J Biol Chem , vol.286 , pp. 8620-8632
    • Im, C.H.1    Hwang, S.M.2    Son, Y.S.3    Heo, J.B.4    Bang, W.Y.5
  • 23
    • 0034637111 scopus 로고    scopus 로고
    • The complete atomic structure of the large ribosomal subunit at 2.4 A resolution
    • Ban N, Nissen P, Hansen J, Moore PB, Steitz TA, (2000) The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. Science 289: 905–920.
    • (2000) Science , vol.289 , pp. 905-920
    • Ban, N.1    Nissen, P.2    Hansen, J.3    Moore, P.B.4    Steitz, T.A.5
  • 24
    • 84908348046 scopus 로고    scopus 로고
    • Peptidyl Transfer on the Ribosome
    • Nierhaus KH, Wilson DN, (2006) Peptidyl Transfer on the Ribosome. eLS
    • (2006) eLS
    • Nierhaus, K.H.1    Wilson, D.N.2
  • 27
    • 84867674597 scopus 로고    scopus 로고
    • Role of the ribosomal protein L27 revealed by single-molecule FRET study
    • Wang Y, Xiao M, (2012) Role of the ribosomal protein L27 revealed by single-molecule FRET study. Protein Sci 21: 1696–1704.
    • (2012) Protein Sci , vol.21 , pp. 1696-1704
    • Wang, Y.1    Xiao, M.2
  • 28
    • 27644598282 scopus 로고    scopus 로고
    • A protein component at the heart of an RNA machine: the importance of protein l27 for the function of the bacterial ribosome
    • Maguire BA, Beniaminov AD, Ramu H, Mankin AS, Zimmermann RA, (2005) A protein component at the heart of an RNA machine: the importance of protein l27 for the function of the bacterial ribosome. Mol Cell 20: 427–435.
    • (2005) Mol Cell , vol.20 , pp. 427-435
    • Maguire, B.A.1    Beniaminov, A.D.2    Ramu, H.3    Mankin, A.S.4    Zimmermann, R.A.5
  • 29
    • 84869113635 scopus 로고    scopus 로고
    • Inactivation of Ribosomal Protein Genes in Bacillus subtilis Reveals Importance of Each Ribosomal Protein for Cell Proliferation and Cell Differentiation
    • Akanuma G, Nanamiya H, Natori Y, Yano K, Suzuki S, et al. (2012) Inactivation of Ribosomal Protein Genes in Bacillus subtilis Reveals Importance of Each Ribosomal Protein for Cell Proliferation and Cell Differentiation. J Bacteriol 194: 6282–6291.
    • (2012) J Bacteriol , vol.194 , pp. 6282-6291
    • Akanuma, G.1    Nanamiya, H.2    Natori, Y.3    Yano, K.4    Suzuki, S.5
  • 30
    • 0017807310 scopus 로고
    • Protein L16 induces a conformational change when incorporated into a L16-deficient core derived from Escherichia coli ribosomes
    • Teraoka H, Nierhaus KH, (1978) Protein L16 induces a conformational change when incorporated into a L16-deficient core derived from Escherichia coli ribosomes. FEBS Lett 88: 223–226.
    • (1978) FEBS Lett , vol.88 , pp. 223-226
    • Teraoka, H.1    Nierhaus, K.H.2
  • 31
    • 14844327974 scopus 로고    scopus 로고
    • Release of the export adapter, Nmd3p, from the 60S ribosomal subunit requires Rpl10p and the cytoplasmic GTPase Lsg1p
    • Hedges J, West M, Johnson AW, (2005) Release of the export adapter, Nmd3p, from the 60S ribosomal subunit requires Rpl10p and the cytoplasmic GTPase Lsg1p. EMBO J 24: 567–579.
    • (2005) EMBO J , vol.24 , pp. 567-579
    • Hedges, J.1    West, M.2    Johnson, A.W.3
  • 32
    • 17644379370 scopus 로고    scopus 로고
    • Defining the order in which Nmd3p and Rpl10p load onto nascent 60S ribosomal subunits
    • West M, Hedges JB, Chen A, Johnson AW, (2005) Defining the order in which Nmd3p and Rpl10p load onto nascent 60S ribosomal subunits. Mol Cell Biol 25: 3802–3813.
    • (2005) Mol Cell Biol , vol.25 , pp. 3802-3813
    • West, M.1    Hedges, J.B.2    Chen, A.3    Johnson, A.W.4
  • 33
    • 84858013820 scopus 로고    scopus 로고
    • Biochemical characterization of ribosome assembly GTPase RbgA in Bacillus subtilis
    • Achila D, Gulati M, Jain N, Britton RA, (2012) Biochemical characterization of ribosome assembly GTPase RbgA in Bacillus subtilis. J Biol Chem 287: 8417–8423.
    • (2012) J Biol Chem , vol.287 , pp. 8417-8423
    • Achila, D.1    Gulati, M.2    Jain, N.3    Britton, R.A.4
  • 34
    • 84876358204 scopus 로고    scopus 로고
    • Mutational analysis of the ribosome assembly GTPase RbgA provides insight into ribosome interaction and ribosome-stimulated GTPase activation
    • Gulati M, Jain N, Anand B, Prakash B, Britton RA, (2013) Mutational analysis of the ribosome assembly GTPase RbgA provides insight into ribosome interaction and ribosome-stimulated GTPase activation. Nucleic Acids Res 41: 3217–3227.
    • (2013) Nucleic Acids Res , vol.41 , pp. 3217-3227
    • Gulati, M.1    Jain, N.2    Anand, B.3    Prakash, B.4    Britton, R.A.5
  • 35
    • 0345685440 scopus 로고    scopus 로고
    • Detecting and analyzing DNA sequencing errors: toward a higher quality of the Bacillus subtilis genome sequence
    • Medigue C, Rose M, Viari A, Danchin A, (1999) Detecting and analyzing DNA sequencing errors: toward a higher quality of the Bacillus subtilis genome sequence. Genome Res 9: 1116–1127.
    • (1999) Genome Res , vol.9 , pp. 1116-1127
    • Medigue, C.1    Rose, M.2    Viari, A.3    Danchin, A.4
  • 36
    • 0017738101 scopus 로고
    • Exchange of individual ribosomal proteins between ribosomes as studied by heavy isotope-transfer experiments
    • Subramanian A-R, van Duin J, (1977) Exchange of individual ribosomal proteins between ribosomes as studied by heavy isotope-transfer experiments. Molecular and General Genetics MGG 158: 1–9.
    • (1977) Molecular and General Genetics MGG , vol.158 , pp. 1-9
    • Subramanian, A.-R.1    Van Duin, J.2
  • 37
    • 0015506474 scopus 로고
    • Magnesium dependence and equilibrium of the Escherichia coli ribosomal subunit association
    • Zitomer RS, Flaks JG, (1972) Magnesium dependence and equilibrium of the Escherichia coli ribosomal subunit association. Journal of Molecular Biology 71: 263–279.
    • (1972) Journal of Molecular Biology , vol.71 , pp. 263-279
    • Zitomer, R.S.1    Flaks, J.G.2
  • 38
    • 0032546747 scopus 로고    scopus 로고
    • Ribosomal proteins S5 and L6: high-resolution crystal structures and roles in protein synthesis and antibiotic resistance
    • Davies C, Bussiere DE, Golden BL, Porter SJ, Ramakrishnan V, et al. (1998) Ribosomal proteins S5 and L6: high-resolution crystal structures and roles in protein synthesis and antibiotic resistance. J Mol Biol 279: 873–888.
    • (1998) J Mol Biol , vol.279 , pp. 873-888
    • Davies, C.1    Bussiere, D.E.2    Golden, B.L.3    Porter, S.J.4    Ramakrishnan, V.5
  • 39
    • 0027431887 scopus 로고
    • Ribosomal protein L6: structural evidence of gene duplication from a primitive RNA binding protein
    • Golden BL, Ramakrishnan V, White SW, (1993) Ribosomal protein L6: structural evidence of gene duplication from a primitive RNA binding protein. EMBO J 12: 4901–4908.
    • (1993) EMBO J , vol.12 , pp. 4901-4908
    • Golden, B.L.1    Ramakrishnan, V.2    White, S.W.3
  • 40
    • 0033534470 scopus 로고    scopus 로고
    • Interaction of the sarcin/ricin domain of 23 S ribosomal RNA with proteins L3 and L6
    • Uchiumi T, Sato N, Wada A, Hachimori A, (1999) Interaction of the sarcin/ricin domain of 23 S ribosomal RNA with proteins L3 and L6. J Biol Chem 274: 681–686.
    • (1999) J Biol Chem , vol.274 , pp. 681-686
    • Uchiumi, T.1    Sato, N.2    Wada, A.3    Hachimori, A.4
  • 41
    • 0034712733 scopus 로고    scopus 로고
    • Selecting rRNA binding sites for the ribosomal proteins L4 and L6 from randomly fragmented rRNA: application of a method called SERF
    • Stelzl U, Spahn CM, Nierhaus KH, (2000) Selecting rRNA binding sites for the ribosomal proteins L4 and L6 from randomly fragmented rRNA: application of a method called SERF. Proc Natl Acad Sci U S A 97: 4597–4602.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 4597-4602
    • Stelzl, U.1    Spahn, C.M.2    Nierhaus, K.H.3
  • 42
    • 0023664556 scopus 로고
    • Incorporation of six additional proteins to complete the assembly map of the 50 S subunit from Escherichia coli ribosomes
    • Herold M, Nierhaus KH, (1987) Incorporation of six additional proteins to complete the assembly map of the 50 S subunit from Escherichia coli ribosomes. J Biol Chem 262: 8826–8833.
    • (1987) J Biol Chem , vol.262 , pp. 8826-8833
    • Herold, M.1    Nierhaus, K.H.2
  • 43
    • 52949138707 scopus 로고    scopus 로고
    • The sarcin-ricin loop of 23S rRNA is essential for assembly of the functional core of the 50S ribosomal subunit
    • Lancaster L, Lambert NJ, Maklan EJ, Horan LH, Noller HF, (2008) The sarcin-ricin loop of 23S rRNA is essential for assembly of the functional core of the 50S ribosomal subunit. RNA 14: 1999–2012.
    • (2008) RNA , vol.14 , pp. 1999-2012
    • Lancaster, L.1    Lambert, N.J.2    Maklan, E.J.3    Horan, L.H.4    Noller, H.F.5
  • 44
    • 78049406997 scopus 로고    scopus 로고
    • Visualizing ribosome biogenesis: parallel assembly pathways for the 30S subunit
    • Mulder AM, Yoshioka C, Beck AH, Bunner AE, Milligan RA, et al. (2010) Visualizing ribosome biogenesis: parallel assembly pathways for the 30S subunit. Science 330: 673–677.
    • (2010) Science , vol.330 , pp. 673-677
    • Mulder, A.M.1    Yoshioka, C.2    Beck, A.H.3    Bunner, A.E.4    Milligan, R.A.5
  • 45
    • 84873410888 scopus 로고    scopus 로고
    • Characterization of the ribosome biogenesis landscape in E. coli using quantitative mass spectrometry
    • Chen SS, Williamson JR, (2013) Characterization of the ribosome biogenesis landscape in E. coli using quantitative mass spectrometry. J Mol Biol 425: 767–779.
    • (2013) J Mol Biol , vol.425 , pp. 767-779
    • Chen, S.S.1    Williamson, J.R.2
  • 46
    • 84888192078 scopus 로고    scopus 로고
    • In vivo X-ray footprinting of pre-30S ribosomes reveals chaperone-dependent remodeling of late assembly intermediates
    • Clatterbuck Soper SF, Dator RP, Limbach PA, Woodson SA, (2013) In vivo X-ray footprinting of pre-30S ribosomes reveals chaperone-dependent remodeling of late assembly intermediates. Mol Cell 52: 506–516.
    • (2013) Mol Cell , vol.52 , pp. 506-516
    • Clatterbuck Soper, S.F.1    Dator, R.P.2    Limbach, P.A.3    Woodson, S.A.4
  • 47
    • 84863619022 scopus 로고    scopus 로고
    • A translation-like cycle is a quality control checkpoint for maturing 40S ribosome subunits
    • Strunk BS, Novak MN, Young CL, Karbstein K, (2012) A translation-like cycle is a quality control checkpoint for maturing 40S ribosome subunits. Cell 150: 111–121.
    • (2012) Cell , vol.150 , pp. 111-121
    • Strunk, B.S.1    Novak, M.N.2    Young, C.L.3    Karbstein, K.4
  • 50
    • 46849117040 scopus 로고    scopus 로고
    • Quantitative Analysis of Isotope Distributions In Proteomic Mass Spectrometry Using Least-Squares Fourier Transform Convolution
    • Sperling E, Bunner AE, Sykes MT, Williamson JR, (2008) Quantitative Analysis of Isotope Distributions In Proteomic Mass Spectrometry Using Least-Squares Fourier Transform Convolution. Analytical Chemistry 80: 4906–4917.
    • (2008) Analytical Chemistry , vol.80 , pp. 4906-4917
    • Sperling, E.1    Bunner, A.E.2    Sykes, M.T.3    Williamson, J.R.4
  • 51
    • 77951965920 scopus 로고    scopus 로고
    • Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
    • MacLean B, Tomazela DM, Shulman N, Chambers M, Finney GL, et al. Skyline: an open source document editor for creating and analyzing targeted proteomics experiments. Bioinformatics 26: 966–968.
    • Bioinformatics , vol.26 , pp. 966-968
    • Maclean, B.1    Tomazela, D.M.2    Shulman, N.3    Chambers, M.4    Finney, G.L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.