Hepatitis E virus of subtype 3i in chronically infected kidney transplant recipients in Southeastern France

Journal of Clinical Microbiology

Volumn 52, Issue 11, 2014, Pages 3967-3972

  Moal, Valérie ^a,b   Gérolami, René ^a   Ferretti, Audrey ^c,d   Purgus, Raj ^a   Devichi, Patricia ^a   Burtey, Stéphane ^a   Colson, Philippe ^b,c  

^a ASSISTANCE PUBLIQUE HÔPITAUX DE MARSEILLE   (France)

^b AIX MARSEILLE UNIVERSITÉ   (France)

^c TIMONE HOSPITAL   (France)

^d HÔPITAL NORD   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHILD; CONTROLLED STUDY; FEMALE; FRANCE; GENOME ANALYSIS; GENOMIC FRAGMENT; GEOGRAPHIC DISTRIBUTION; GRAFT INFECTION; GRAFT RECIPIENT; HEPATITIS E VIRUS; HUMAN; KIDNEY GRAFT; MALE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; OPEN READING FRAME 2; PHYLOGENETIC TREE; PREVALENCE; SCHOOL CHILD; SEQUENCE ANALYSIS; VIRUS GENOME; ADULT; AGED; CLASSIFICATION; DNA SEQUENCE; GENETICS; GENOTYPE; GENOTYPING TECHNIQUE; HEPATITIS E; HEPATITIS, CHRONIC; ISOLATION AND PURIFICATION; KIDNEY TRANSPLANTATION; MIDDLE AGED; MOLECULAR EPIDEMIOLOGY; MOLECULAR GENETICS; VIROLOGY;

VIRUS RNA;

ADULT; AGED; FEMALE; FRANCE; GENOTYPE; GENOTYPING TECHNIQUES; HEPATITIS E; HEPATITIS E VIRUS; HEPATITIS, CHRONIC; HUMANS; KIDNEY TRANSPLANTATION; MALE; MIDDLE AGED; MOLECULAR EPIDEMIOLOGY; MOLECULAR SEQUENCE DATA; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; TRANSPLANT RECIPIENTS;

EID: 84908316724     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.02028-14     Document Type: Article

References (20)

1. Kamar N, Dalton HR, Abravanel F, Izopet J. 2014. Hepatitis E virus infection. Clin. Microbiol. Rev. 27:116-138. http://dx.doi.org/10.1128/CMR.00057-13.
2. Moal V, Legris T, Burtey S, Morange S, Purgus R, Dussol B, Garcia S, Motte A, Gerolami R, Berland Y, Colson P. 2013. Infection with hepatitis E virus in kidney transplant recipients in southeastern France. J. Med. Virol. 85:462-471. http://dx.doi.org/10.1002/jmv.23469.
3. Lu L, Li C, Hagedorn CH. 2006. Phylogenetic analysis of global hepatitis E virus sequences: genetic diversity, subtypes and zoonosis. Rev. Med. Virol. 16:5-36. http://dx.doi.org/10.1002/rmv.482.
4. Zhai L, Dai X, Meng J. 2006. Hepatitis E virus genotyping based on full-length genome and partial genomic regions. Virus Res. 120:57-69. http://dx.doi.org/10.1016/j.virusres.2006.01.013.
5. Erker JC, Desai SM, Mushahwar IK. 1999. Rapid detection of hepatitis E virus RNA by reverse transcription-polymerase chain reaction using universal oligonucleotide primers. J. Virol. Methods 81:109-113. http://dx.doi.org/10.1016/S0166-0934(99)00052-X.
6. Peralta B, Mateu E, Casas M, de Deus N, Martin N, Pina S. 2009. Genetic characterization of the complete coding regions of genotype 3 hepatitis E virus isolated from Spanish swine herds. Virus Res. 139:111-116. http://dx.doi.org/10.1016/j.virusres.2008.09.008.
7. Legrand-Abravanel F, Mansuy JM, Dubois M, Kamar N, Peron JM, Rostaing L, Izopet J. 2009. Hepatitis E virus genotype 3 diversity, France. Emerg. Infect. Dis. 15:110-114. http://dx.doi.org/10.3201/eid1501.080296.
8. Kaba M, Davoust B, Marie JL, Barthet M, Henry M, Tamalet C, Raoult D, Colson P. 2009. Frequent transmission of hepatitis E virus among piglets in farms in Southern France. J. Med. Virol. 81:1750-1759. http://dx.doi.org/10.1002/jmv.21553.
9. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410. http://dx.doi.org/10.1016/S0022-2836(05)80360-2.
10. Pickett BE, Sadat EL, Zhang Y, Noronha JM, Squires RB, Hunt V, Liu M, Kumar S, Zaremba S, Gu Z, Zhou L, Larson CN, Dietrich J, Klem EB, Scheuermann RH. 2012. ViPR: an open bioinformatics database and analysis resource for virology research. Nucleic Acids Res. 40:D593-D598. http://dx.doi.org/10.1093/nar/gkr859.
11. Purdy MA, Dell'Amico MC, Gonzales JL, Segundo H, Tolari F, Mazzei M, Bartoloni A, Khudyakov YE. 2012. Human and porcine hepatitis E viruses, southeastern Bolivia. Emerg. Infect. Dis. 18:339-340. http://dx.doi.org/10.3201/eid1802.111453.
12. Schielke A, Sachs K, Lierz M, Appel B, Jansen A, Johne R. 2009. Detection of hepatitis E virus in wild boars of rural and urban regions in Germany and whole genome characterization of an endemic strain. Virol. J. 6:58. http://dx.doi.org/10.1186/1743-422X-6-58.
13. Adlhoch C, Wolf A, Meisel H, Kaiser M, Ellerbrok H, Pauli G. 2009. High HEV presence in four different wild boar populations in East and West Germany. Vet. Microbiol. 139:270-278. http://dx.doi.org/10.1016/j.vetmic.2009.06.032.
14. Johne R, Reetz J, Ulrich RG, Machnowska P, Sachsenroder J, Nickel P, Hofmann J. 2014. An ORF1-rearranged hepatitis E virus derived from a chronically infected patient efficiently replicates in cell culture. J. Viral Hepat. 21:447-456. http://dx.doi.org/10.1111/jvh.12157.
15. Bouquet J, Cherel P, Pavio N. 2012. Genetic characterization and codon usage bias of full-length hepatitis E virus sequences shed new lights on genotypic distribution, host restriction and genome evolution. Infect. Genet. Evol. 12:1842-1853. http://dx.doi.org/10.1016/j.meegid.2012.07.021.
16. Lorenzo FR, Tsatsralt-Od B, Ganbat S, Takahashi M, Okamoto H. 2007. Analysis of the full-length genome of hepatitis E virus isolates obtained from farm pigs in Mongolia. J. Med. Virol. 79:1128-1137. http://dx.doi.org/10.1002/jmv.20905.
17. Mirazo S, Ramos N, Russi JC, Arbiza J. 2013. Genetic heterogeneity and subtyping of human hepatitis E virus isolates from Uruguay. Virus Res. 173:364-370. http://dx.doi.org/10.1016/j.virusres.2013.01.005.
18. Colson P, Borentain P, Motte A, Lagrange X, Kaba M, Henry M, Tamalet C, Gerolami R. 2007. First human cases of hepatitis E infection with genotype 3c strains. J. Clin. Virol. 40:318-320. http://dx.doi.org/10.1016/j.jcv.2007.08.002.
19. Wenzel JJ, Preiss J, Schemmerer M, Huber B, Plentz A, Jilg W. 2011. Detection of hepatitis E virus (HEV) from porcine livers in southeastern Germany and high sequence homology to human HEV isolates. J. Clin. Virol. 52:50-54. http://dx.doi.org/10.1016/j.jcv.2011.06.006.
20. Xia H, Liu L, Linde AM, Belak S, Norder H, Widen F. 2008. Molecular characterization and phylogenetic analysis of the complete genome of a hepatitis E virus from European swine. Virus Genes 37:39-48. http://dx.doi.org/10.1007/s11262-008-0246-9.