Genetic characterization of the complete coding regions of genotype 3 hepatitis E virus isolated from Spanish swine herds

Virus Research

Volumn 139, Issue 1, 2009, Pages 111-116

  Peralta, Bibiana ^a   Mateu, Enric ^a,b   Casas, Maribel ^a   de Deus, Nilsa ^a   Martín, Marga ^a,b   Pina, Sonia ^a,c  

^a CENTRE DE RECERCA EN SANITAT ANIMAL CRESA   (Spain)

^b UNIVERSITAT AUTÒNOMA DE BARCELONA   (Spain)

^c IRTA   (Spain)

Author keywords

Complete coding regions; Genotype 3; Spain; Swine HEV

Indexed keywords

ARTICLE; GENETIC ANALYSIS; GENOTYPE; HEPATITIS E VIRUS; HUMAN; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; SWINE; UNINDEXED SEQUENCE; VIRUS ISOLATION; VIRUS STRAIN;

ANIMALS; GENOME, VIRAL; GENOTYPE; HEPATITIS E; HEPATITIS E VIRUS; HEPATITIS, VIRAL, ANIMAL; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SPAIN; SWINE; SWINE DISEASES;

HEPATITIS E VIRUS; SUIDAE; SUS;

EID: 57749093278     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2008.09.008     Document Type: Article

References (40)

1. Arankalle V.A., Paranjape S., Emerson S.U., Purcell R.H., and Walimbe A.M. Phylogenetic analysis of hepatitis E virus isolates from India (1976-1993). J. Gen. Virol. 80 (1999) 1691-1700
2. Arankalle V.A., Lole K.S., Deshmukh T.M., Chobe L.P., and Gandhe S.S. Evaluation of human (genotype 1) and swine (genotype 4)-ORF2-based ELISAs for anti-HEV IgM and IgG detection in an endemic country and search for type 4 human HEV infections. J. Viral. Hepat. 6 (2007) 435-445
3. Buisson Y., Grandadam M., Nicand E., Cheval P., van Cuyck-Gandre H., Innis B., Rehel P., Coursaget P., Teyssou R., and Tsarev S. Identification of a novel hepatitis E virus in Nigeria. J. Gen. Virol. 81 (2000) 903-909
4. Buti M., Clemente-Casares P., Jardi R., Formiga-Cruz M., Schaper M., Valdes A., Rodriguez-Frias F., Esteban R., and Girones R. Sporadic cases of acute autochthonous hepatitis E in Spain. J. Hepatol. 41 (2004) 126-131
5. Buti M., Dominguez A., Plans P., Jardi R., Schaper M., Espunes J., Cardenosa N., Rodriguez-Frias F., Esteban R., Plasencia A., and Salleras L. Community-based seroepidemiological survey of hepatitis E virus infection in Catalonia, Spain. Clin. Vaccine Immunol. 13 (2006) 1328-1332
6. Clemente-Casares P., Pina S., Buti M., Jardi R., Martín M., Bofill-Mas S., and Girones R. Hepatitis E virus epidemiology in industrialized countries. Em. Infect. Dis. 9 (2003) 448-454
7. De Deus N., Seminati C., Pina S., Mateu E., Martín M., and Segalés J. Detection of hepatitis E virus in liver, mesenteric lymph node, serum, bile and faeces of naturally infected pigs affected by different pathological conditions. Vet. Microbiol. 119 (2007) 105-114
8. Emerson S.U., Nguyen H., Graff J., Stephany D.A., Brockington A., and Purcell R.H. In vitro replication of hepatitis E virus (HEV) genomes and of an HEV replicon expressing green fluorescent protein. J. Virol. 78 (2004) 4838-4846
9. Engle R.E., Yu C., Emerson S.U., Meng X.J., and Purcell R.H. Hepatitis E virus (HEV) capsid antigens derived from viruses of human and swine origin are equally efficient for detecting anti-HEV by enzyme immunoassay. J. Clin. Microbiol. 40 (2002) 4576-4580
10. Ewing B., and Green P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8 (1998) 186-194
11. Ewing B., Hillier L., Wendl M.C., and Green P. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8 (1998) 175-185
12. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
13. Fernandez-Barredo S., Galiana C., Garcia A., Vega S., Gomez M.T., and Perez-Gracia M.T. Detection of hepatitis E virus shedding in feces of pigs at different stages of production using reverse transcription-polymerase chain reaction. J. Vet. Diagn. Invest. 18 (2006) 462-465
14. Gordon D., Abajian C., and Green P. Consed: a graphical tool for sequence finishing. Genome Res. 8 (1998) 195-202
15. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 41 (1999) 95-98
16. Huang C.C., Nguyen D., Fernandez J., Yun K.Y., Fry K.E., Bradley D.W., Tam A.W., and Reyes G.R. Molecular cloning and sequencing of the Mexico isolate of hepatitis E virus (HEV). Virology 191 (1992) 550-558
17. Inoue J., Takahashi M., Ito K., Shimosegawa T., and Okamoto H. Analysis of human and swine hepatitis E virus (HEV) isolates of genotype 3 in Japan that are only 81-83% similar to reported HEV isolates of the same genotype over the entire genome. J. Gen. Virol. 87 (2006) 2363-2369
18. Jothikumar N., Cromeans T.L., Robertson B.H., Meng X.J., and Hill V.R. A broadly reactive one-step real-time RT-PCR assay for rapid and sensitive detection of hepatitis E virus. J. Virol. Methods 131 (2006) 65-71
19. Kaci S., Nöckler K., and Johne R. Detection of hepatitis E virus in archived German wild boar serum samples. Vet. Microbiol. 30 (2008) 380-385
20. Lorenzo F.R., Tsatsralt-Od B., Ganbat S., Takahashi M., and Okamoto H. Analysis of the full-length genome of hepatitis E virus isolates obtained from farm pigs in Mongolia. J. Med. Virol. 79 (2007) 1128-1137
21. Lu L., Drobeniuc J., Kobylnikov N., Usmanov R.K., Robertson B.H., Favorov M.O., and Margolis H.S. Complete sequence of a Kyrgyzstan swine hepatitis E virus (HEV) isolated from a piglet thought to be experimentally infected with human HEV. J. Med. Virol. 74 (2004) 556-562
22. Lu L., Li C., and Hagedorn C.H. Phylogenetic analysis of global hepatitis E virus sequences: genetic diversity, subtypes and zoonosis. Rev. Med. Virol. 16 (2006) 5-36
23. Mansuy J.M., Legrand-Abravanel F., Calot J.P., Peron J.M., Alric L., Agudo S., Rech H., Destruel F., and Izopet J. High prevalence of anti-hepatitis E virus antibodies in blood donors from South West France. J. Med. Virol. 80 (2008) 289-293
24. Martín M., Segalés J., Huang F.F., Guenette D.K., Mateu E., de Deus N., and Meng X.J. Association of hepatitis E virus (HEV) and postweaning multisystemic wasting syndrome (PMWS) with lesions of hepatitis in pigs. Vet. Microbiol. 122 (2007) 16-24
25. Nakamura M., Takahashi K., Taira K., Taira M., Ohno A., Sakugawa H., Arai M., and Mishiro S. Hepatitis E virus infection in wild mongooses of Okinawa, Japan: Demonstration of anti-HEV antibodies and a full-genome nucleotide sequence. Hepatol. Res. 34 (2006) 137-140
26. Nishizawa T., Takahashi M., Mizuo H., Miyajima H., Gotanda Y., and Okamoto H. Characterization of Japanese swine and human hepatitis E virus isolates of genotype IV with 99% identity over the entire genome. J. Gen. Virol. 84 (2003) 1245-1251
27. Pavia M., Iiritano E., Veratti M.A., and Angelillo I.F. Prevalence of hepatitis E antibodies in healthy persons in southern Italy. Infection 26 (1998) 32-35
28. Okamoto H. Genetic variability and evolution of hepatitis E virus. Virus Res. 127 (2007) 216-228
29. Pina S., Buti M., Cotrina M., Piella J., and Girones R. HEV identified in serum from humans with acute hepatitis and in sewage of animal origin in Spain. J. Hepatol. 33 (2000) 826-833
30. Reyes G.R., Purdy M.A., Kim J.P., Luk K.C., Young L.M., Fry K.E., and Bradley D.W. Isolation of a cDNA from the virus responsible for enterically transmitted non-A, non-B hepatitis. Science 16 (1990) 1335-1339
31. Rutjes S.A., Lodder W.J., Bouwknegt M., and de Roda Husman A.M. Increased hepatitis E virus prevalence on Dutch pig farms from 33 to 55% by using appropriate internal quality controls for RT-PCR. J. Virol. Methods 143 (2007) 112-116
32. Schlauder G.G., Desai S.M., Zanetti A.R., Tassopoulos N.C., and Mushahwar I.K. Novel hepatitis E virus (HEV) isolates from Europe: evidence for additional genotypes of HEV. J. Med. Virol. 57 (1999) 243-251
33. Seminati C., Mateu E., Peralta B., de Deus N., and Martin M. Distribution of hepatitis E virus infection and its prevalence in pigs on commercial farms in Spain. Vet. J. 175 (2008) 130-132
34. Takahashi K., Kitajima N., Abe N., and Mishiro S. Complete or near-complete nucleotide sequences of hepatitis E virus genome recovered from a wild boar, a deer, and four patients who ate the deer. Virology 330 (2004) 501-505
35. Tamura K., Dudley J., Nei M., and Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24 (2007) 1596-1599
36. Tei S., Kitajima N., Ohara S., Inoue Y., Miki M., Yamatani T., Yamabe H., Mishiro S., and Kinoshita Y. Consumption of uncooked deer meat as a risk factor for hepatitis E virus infection: an age- and sex-matched case-control study. J. Med. Virol. 74 (2004) 67-70
37. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acid. Res. 24 (1997) 4876-4882
38. Van der Poel W.H., Verschoor F., van der Heide R., Herrera M.I., Vivo A., Kooreman M., and de Roda Husman A.M. Hepatitis E virus sequences in swine related to sequences in humans, The Netherlands. Emer. Infect. Dis. 7 (2001) 970-976
39. Xia H., Liu L., Linde A.M., Belák S., Norder H., and Widén F. Molecular characterization and phylogenetic analysis of the complete genome of a hepatitis E virus from European swine. Virus Genes 37 (2008) 39-48
40. Zhai L., Dai X., and Meng J. Hepatitis E virus genotyping based on full-length genome and partial genomic regions. Virus Res. 120 (2006) 57-69