메뉴 건너뛰기




Volumn 1197, Issue , 2014, Pages 275-285

Taking the shortcut for high-throughput shotgun proteomic analysis of bacteria

Author keywords

Bacterial proteome; High throughput proteomics; Quantitative proteomics; Spectral count; Tandem mass spectrometry

Indexed keywords

BACTERIAL PROTEIN; PROTEOME;

EID: 84908252371     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4939-1261-2_16     Document Type: Article
Times cited : (98)

References (20)
  • 1
    • 84871939078 scopus 로고    scopus 로고
    • Microbiology and proteomics, getting the best of both worlds!
    • Armengaud J (2013) Microbiology and proteomics, getting the best of both worlds! Environ Microbiol 15:12-23
    • (2013) Environ Microbiol , vol.15 , pp. 12-23
    • Armengaud, J.1
  • 2
    • 79960399949 scopus 로고    scopus 로고
    • Investigating pathogen biology at the level of the proteome
    • Cash P (2011) Investigating pathogen biology at the level of the proteome. Proteomics 11:3190-3202
    • (2011) Proteomics , vol.11 , pp. 3190-3202
    • Cash, P.1
  • 3
    • 84859226915 scopus 로고    scopus 로고
    • The current state of microbial proteomics: Where we are and where we want to go
    • Chao T-C, Hansmeier N (2012) The current state of microbial proteomics: where we are and where we want to go. Proteomics 12:638-650
    • (2012) Proteomics , vol.12 , pp. 638-650
    • Chao, T.-C.1    Hansmeier, N.2
  • 4
    • 79960416662 scopus 로고    scopus 로고
    • A proteomic view of the host-pathogen interaction: The host perspective
    • Hartlova A, Krocova Z, Cerveny L, Stulik J (2011) A proteomic view of the host-pathogen interaction: the host perspective. Proteomics 11:3212-3220
    • (2011) Proteomics , vol.11 , pp. 3212-3220
    • Hartlova, A.1    Krocova, Z.2    Cerveny, L.3    Stulik, J.4
  • 5
    • 3242731195 scopus 로고    scopus 로고
    • A model for random sampling and estimation of relative protein abundance in shotgun proteomics
    • Liu HB, Sadygov RG, Yates JR (2004) A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal Chem 76:4193-4201
    • (2004) Anal Chem , vol.76 , pp. 4193-4201
    • Liu, H.B.1    Sadygov, R.G.2    Yates, J.R.3
  • 6
    • 34247642450 scopus 로고    scopus 로고
    • Quantitative proteomic analysis of distinct mammalian mediator complexes using normalized spectral abundance factors
    • Paoletti AC, Parmely TJ, Tomomori-Sato C, Sato S, Zhu DX, Conaway RC et al (2006) Quantitative proteomic analysis of distinct mammalian mediator complexes using normalized spectral abundance factors. Proc Natl Acad Sci U S A 103:18928-18933
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 18928-18933
    • Paoletti, A.C.1    Parmely, T.J.2    Tomomori-Sato, C.3    Sato, S.4    Zhu, D.X.5    Conaway, R.C.6
  • 7
    • 84355166729 scopus 로고    scopus 로고
    • Proteomic insights into the lifestyle of an environmentally relevant marine bacterium
    • Christie-Oleza JA, Fernandez B, Nogales B, Bosch R, Armengaud J (2012) Proteomic insights into the lifestyle of an environmentally relevant marine bacterium. ISME J 6:124-135
    • (2012) ISME J , vol.6 , pp. 124-135
    • Christie-Oleza, J.A.1    Fernandez, B.2    Nogales, B.3    Bosch, R.4    Armengaud, J.5
  • 8
    • 34548428842 scopus 로고    scopus 로고
    • The Association of Biomolecular Resource Facilities Proteomics Research Group 2006 Study-relative protein quantitation
    • Turck CW, Falick AM, Kowalak JA, Lane WS, Lilley KS, Phinney BS et al (2007) The Association of Biomolecular Resource Facilities Proteomics Research Group 2006 Study-relative protein quantitation. Mol Cell Proteomics 6:1291-1298
    • (2007) Mol Cell Proteomics , vol.6 , pp. 1291-1298
    • Turck, C.W.1    Falick, A.M.2    Kowalak, J.A.3    Lane, W.S.4    Lilley, K.S.5    Phinney, B.S.6
  • 9
    • 84871935160 scopus 로고    scopus 로고
    • Shotgun nanoLC-MS/MS proteogenomics to document MALDI-TOF biomarkers for screening new members of the Ruegeria genus
    • Christie-Oleza JA, Pina-Villalonga JM, Guerin P, Miotello G, Bosch R, Nogales B et al (2013) Shotgun nanoLC-MS/MS proteogenomics to document MALDI-TOF biomarkers for screening new members of the Ruegeria genus. Environ Microbiol 15:133-147
    • (2013) Environ Microbiol , vol.15 , pp. 133-147
    • Christie-Oleza, J.A.1    Pina-Villalonga, J.M.2    Guerin, P.3    Miotello, G.4    Bosch, R.5    Nogales, B.6
  • 10
    • 84862332127 scopus 로고    scopus 로고
    • Restricting fermentative potential by proteome remodeling: An adaptive strategy evidenced in Bacillus cereus
    • Clair G, Armengaud J, Duport C (2012) Restricting fermentative potential by proteome remodeling: an adaptive strategy evidenced in Bacillus cereus. Mol Cell Proteomics 11(M111): 013102
    • (2012) Mol Cell Proteomics , vol.11 , Issue.M111
    • Clair, G.1    Armengaud, J.2    Duport, C.3
  • 11
    • 77954718616 scopus 로고    scopus 로고
    • Expanding the known repertoire of virulence factors produced by Bacillus cereus through early secretome profiling in three redox conditions
    • Clair G, Roussi S, Armengaud J, Duport C (2010) Expanding the known repertoire of virulence factors produced by Bacillus cereus through early secretome profiling in three redox conditions. Mol Cell Proteomics 9: 1486-1498
    • (2010) Mol Cell Proteomics , vol.9 , pp. 1486-1498
    • Clair, G.1    Roussi, S.2    Armengaud, J.3    Duport, C.4
  • 12
    • 84856759434 scopus 로고    scopus 로고
    • Comparative proteogenomics of twelve Roseobacter exoproteomes reveals different adaptive strategies among these marine bacteria
    • Christie-Oleza JA, Pina-Villalonga JM, Bosch R, Nogales B, Armengaud J (2012) Comparative proteogenomics of twelve Roseobacter exoproteomes reveals different adaptive strategies among these marine bacteria. Mol Cell Proteomics 11:M111.013110
    • (2012) Mol Cell Proteomics , vol.11 , Issue.M111
    • Christie-Oleza, J.A.1    Pina-Villalonga, J.M.2    Bosch, R.3    Nogales, B.4    Armengaud, J.5
  • 13
    • 77956401047 scopus 로고    scopus 로고
    • In-depth analysis of exoproteomes from marine bacteria by shotgun liquid chromatography-tandem mass spectrometry: The Ruegeria pomeroyi DSS-3 casestudy
    • Christie-Oleza JA, Armengaud J (2010) In-depth analysis of exoproteomes from marine bacteria by shotgun liquid chromatography-tandem mass spectrometry: the Ruegeria pomeroyi DSS-3 casestudy. Mar Drugs 8:2223-2239
    • (2010) Mar Drugs , vol.8 , pp. 2223-2239
    • Christie-Oleza, J.A.1    Armengaud, J.2
  • 15
    • 67650770057 scopus 로고    scopus 로고
    • A toolbox for validation of mass spectrometry peptides identification and generation of database: IRMa
    • Dupierris V, Masselon C, Court M, Kieffer-Jaquinod S, Bruley C (2009) A toolbox for validation of mass spectrometry peptides identification and generation of database: IRMa. Bioinformatics 25:1980-1981
    • (2009) Bioinformatics , vol.25 , pp. 1980-1981
    • Dupierris, V.1    Masselon, C.2    Court, M.3    Kieffer-Jaquinod, S.4    Bruley, C.5
  • 17
    • 84863533598 scopus 로고    scopus 로고
    • Improving the TFold test for differential shotgun proteomics
    • Carvalho PC, Yates JR 3rd, Barbosa VC (2012) Improving the TFold test for differential shotgun proteomics. Bioinformatics 28:1652-1654
    • (2012) Bioinformatics , vol.28 , pp. 1652-1654
    • Carvalho, P.C.1    Yates, J.R.2    Barbosa, V.C.3
  • 18
    • 71549148689 scopus 로고    scopus 로고
    • The effect of preanalytical factors on stability of the proteome and selected metabolites in cerebrospinal fl uid (CSF)
    • Rosenling T, Slim CL, Christin C, Coulier L, Shi S, Stoop MP et al (2009) The effect of preanalytical factors on stability of the proteome and selected metabolites in cerebrospinal fl uid (CSF). J Proteome Res 8:5511-5522
    • (2009) J Proteome Res , vol.8 , pp. 5511-5522
    • Rosenling, T.1    Slim, C.L.2    Christin, C.3    Coulier, L.4    Shi, S.5    Stoop, M.P.6
  • 19
    • 67650400627 scopus 로고    scopus 로고
    • Peptide storage: Are you getting the best return on your investment? Defining optimal storage conditions for proteomics samples
    • Kraut A, Marcellin M, Adrait A, Kuhn L, Louwagie M, Kieffer-Jaquinod S et al (2009) Peptide storage: are you getting the best return on your investment? Defining optimal storage conditions for proteomics samples. J Proteome Res 8:3778-3785
    • (2009) J Proteome Res , vol.8 , pp. 3778-3785
    • Kraut, A.1    Marcellin, M.2    Adrait, A.3    Kuhn, L.4    Louwagie, M.5    Kieffer-Jaquinod, S.6
  • 20
    • 0025066941 scopus 로고
    • More powerful procedures for multiple significance testing
    • Hochberg Y, Benjamini Y (1990) More powerful procedures for multiple significance testing. Stat Med 9:811-818
    • (1990) Stat Med , vol.9 , pp. 811-818
    • Hochberg, Y.1    Benjamini, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.