-
1
-
-
84878011578
-
Exploring the three-dimensional organization of genomes: Interpreting chromatin interaction data
-
PMID:23657480
-
Dekker J, Marti-Renom MA, Mirny LA. Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data. Nat Rev Genet 2013; 14:390-403; PMID:23657480; http:// dx.doi.org/10.1038/nrg3454
-
(2013)
Nat Rev Genet
, vol.14
, pp. 390-403
-
-
Dekker, J.1
Marti-Renom, M.A.2
Mirny, L.A.3
-
2
-
-
0037083376
-
Capturing chromosome conformation
-
PMID:11847345
-
Dekker J, Rippe K, Dekker M, Kleckner N. Capturing chromosome conformation. Science 2002; 295:1306-11; PMID:11847345; http://dx.doi. org/10.1126/science.1067799
-
(2002)
Science
, vol.295
, pp. 1306-1311
-
-
Dekker, J.1
Rippe, K.2
Dekker, M.3
Kleckner, N.4
-
3
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
PMID:19815776
-
Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, Telling A, Amit I, Lajoie BR, Sabo PJ, Dorschner MO, et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 2009; 326:289-93; PMID:19815776; http://dx.doi. org/10.1126/science.1181369
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
Van Berkum, N.L.2
Williams, L.3
Imakaev, M.4
Ragoczy, T.5
Telling, A.6
Amit, I.7
Lajoie, B.R.8
Sabo, P.J.9
Dorschner, M.O.10
-
4
-
-
33846535507
-
Cell biology: Chromosome territories
-
PMID:17251970
-
Meaburn KJ, Misteli T. Cell biology: chromosome territories. Nature 2007; 445:379-781; PMID:17251970; http://dx.doi.org/10.1038/445379a
-
(2007)
Nature
, vol.445
, pp. 379-781
-
-
Meaburn, K.J.1
Misteli, T.2
-
5
-
-
0035316574
-
Chromosome territories, nuclear architecture and gene regulation in mammalian cells
-
PMID:11283701
-
Cremer T, Cremer C. Chromosome territories, nuclear architecture and gene regulation in mammalian cells. Nat Rev Genet 2001; 2:292-301; PMID:11283701; http://dx.doi.org/10.1038/35066075
-
(2001)
Nat Rev Genet
, vol.2
, pp. 292-301
-
-
Cremer, T.1
Cremer, C.2
-
6
-
-
33646526019
-
Chromosome territories--a functional nuclear landscape
-
PMID:16687245
-
Cremer T, Cremer M, Dietzel S, Müller S, Solovei I, Fakan S. Chromosome territories--a functional nuclear landscape. Curr Opin Cell Biol 2006; 18:307-16; PMID:16687245; http://dx.doi.org/10.1016/j. ceb.2006.04.007
-
(2006)
Curr Opin Cell Biol
, vol.18
, pp. 307-316
-
-
Cremer, T.1
Cremer, M.2
Dietzel, S.3
Müller, S.4
Solovei, I.5
Fakan, S.6
-
7
-
-
33744977019
-
Nuclear pore association confers optimal expression levels for an inducible yeast gene
-
PMID:16760983
-
Taddei A, Van Houwe G, Hediger F, Kalck V, Cubizolles F, Schober H, Gasser SM. Nuclear pore association confers optimal expression levels for an inducible yeast gene. Nature 2006; 441:774-8; PMID:16760983; http://dx.doi.org/10.1038/ nature04845
-
(2006)
Nature
, vol.441
, pp. 774-778
-
-
Taddei, A.1
Van Houwe, G.2
Hediger, F.3
Kalck, V.4
Cubizolles, F.5
Schober, H.6
Gasser, S.M.7
-
8
-
-
0038054340
-
Spatial proximity of translocation-prone gene loci in human lymphomas
-
PMID:12808455
-
Roix JJ, McQueen PG, Munson PJ, Parada LA, Misteli T. Spatial proximity of translocation-prone gene loci in human lymphomas. Nat Genet 2003; 34:287-91; PMID:12808455; http://dx.doi. org/10.1038/ng1177
-
(2003)
Nat Genet
, vol.34
, pp. 287-291
-
-
Roix, J.J.1
McQueen, P.G.2
Munson, P.J.3
Parada, L.A.4
Misteli, T.5
-
9
-
-
50049126078
-
Identification of cis-acting sites for condensin loading onto budding yeast chromosomes
-
PMID:18708580
-
D’Ambrosio C, Schmidt CK, Katou Y, Kelly G, Itoh T, Shirahige K, Uhlmann F. Identification of cis-acting sites for condensin loading onto budding yeast chromosomes. Genes Dev 2008; 22:2215-27; PMID:18708580; http://dx.doi.org/10.1101/ gad.1675708
-
(2008)
Genes Dev
, vol.22
, pp. 2215-2227
-
-
D’ambrosio, C.1
Schmidt, C.K.2
Katou, Y.3
Kelly, G.4
Itoh, T.5
Shirahige, K.6
Uhlmann, F.7
-
10
-
-
79960235249
-
Cohesin, condensin, and the intramolecular centromere loop together generate the mitotic chromatin spring
-
PMID:21708976
-
Stephens AD, Haase J, Vicci L, Taylor RM, Bloom K. Cohesin, condensin, and the intramolecular centromere loop together generate the mitotic chromatin spring. J Cell Biol 2011; 193:1167-80; PMID:21708976; http://dx.doi.org/10.1083/ jcb.201103138
-
(2011)
J Cell Biol
, vol.193
, pp. 1167-1180
-
-
Stephens, A.D.1
Haase, J.2
Vicci, L.3
Taylor, R.M.4
Bloom, K.5
-
11
-
-
84890491186
-
The spatial segregation of pericentric cohesin and condensin in the mitotic spindle
-
PMID:24152737
-
Stephens AD, Quammen CW, Chang B, Haase J, Taylor RM, Bloom K. The spatial segregation of pericentric cohesin and condensin in the mitotic spindle. Mol Biol Cell 2013; 24:3909-19; PMID:24152737; http://dx.doi.org/10.1091/mbc. E13-06-0325
-
(2013)
Mol Biol Cell
, vol.24
, pp. 3909-3919
-
-
Stephens, A.D.1
Quammen, C.W.2
Chang, B.3
Haase, J.4
Taylor, R.M.5
Bloom, K.6
-
12
-
-
33646177549
-
At the heart of the chromosome
-
PMID:16633335
-
Hirano T. At the heart of the chromosome: SMC proteins in action. Nat Rev Mol Cell Biol 2006; 7:311-22; PMID:16633335; http://dx.doi.org/10.1038/ nrm1909
-
(2006)
SMC proteins in action. Nat Rev Mol Cell Biol
, vol.7
, pp. 311-322
-
-
Hirano, T.1
-
13
-
-
73349127026
-
Cohesin: Its roles and mechanisms
-
PMID:19886810
-
Nasmyth K, Haering CH. Cohesin: its roles and mechanisms. Annu Rev Genet 2009; 43:525-58; PMID:19886810; http://dx.doi.org/10.1146/ annurev-genet-102108-134233
-
(2009)
Annu Rev Genet
, vol.43
, pp. 525-558
-
-
Nasmyth, K.1
Haering, C.H.2
-
14
-
-
51149106585
-
Sister chromatid cohesion: A simple concept with a complex reality
-
PMID:18616427
-
Onn I, Heidinger-Pauli JM, Guacci V, Unal E, Koshland DE. Sister chromatid cohesion: a simple concept with a complex reality. Annu Rev Cell Dev Biol 2008; 24:105-29; PMID:18616427; http://dx.doi. org/10.1146/annurev.cellbio.24.110707.175350
-
(2008)
Annu Rev Cell Dev Biol
, vol.24
, pp. 105-129
-
-
Onn, I.1
Heidinger-Pauli, J.M.2
Guacci, V.3
Unal, E.4
Koshland, D.E.5
-
15
-
-
84864193719
-
Mechanical regulation of nuclear structure and function
-
PMID:22655599
-
Martins RP, Finan JD, Guilak F, Lee DA. Mechanical regulation of nuclear structure and function. Annu Rev Biomed Eng 2012; 14:431-55; PMID:22655599; http://dx.doi.org/10.1146/ annurev-bioeng-071910-124638
-
(2012)
Annu Rev Biomed Eng
, vol.14
, pp. 431-455
-
-
Martins, R.P.1
Finan, J.D.2
Guilak, F.3
Lee, D.A.4
-
16
-
-
85015087906
-
Ten years of tension: Single-molecule DNA mechanics
-
PMID:12540915
-
Bustamante C, Bryant Z, Smith SB. Ten years of tension: single-molecule DNA mechanics. Nature 2003; 421:423-7; PMID:12540915; http://dx.doi. org/10.1038/nature01405
-
(2003)
Nature
, vol.421
, pp. 423-427
-
-
Bustamante, C.1
Bryant, Z.2
Smith, S.B.3
-
17
-
-
0012567975
-
Stretching and imaging single DNA molecules and chromatin
-
PMID:12785092
-
Zlatanova J, Leuba SH. Stretching and imaging single DNA molecules and chromatin. J Muscle Res Cell Motil 2002; 23:377-95; PMID:12785092; http:// dx.doi.org/10.1023/A:1023498120458
-
(2002)
J Muscle Res Cell Motil
, vol.23
, pp. 377-395
-
-
Zlatanova, J.1
Leuba, S.H.2
-
18
-
-
0037458039
-
Assembly of single chromatin fibers depends on the tension in the DNA molecule: Magnetic tweezers study
-
PMID:12522259
-
Leuba SH, Karymov MA, Tomschik M, Ramjit R, Smith P, Zlatanova J. Assembly of single chromatin fibers depends on the tension in the DNA molecule: magnetic tweezers study. Proc Natl Acad Sci U S A 2003; 100:495-500; PMID:12522259; http://dx.doi. org/10.1073/pnas.0136890100
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 495-500
-
-
Leuba, S.H.1
Karymov, M.A.2
Tomschik, M.3
Ramjit, R.4
Smith, P.5
Zlatanova, J.6
-
19
-
-
67249108373
-
DNA relaxation dynamics as a probe for the intracellular environment
-
PMID:19478070
-
Fisher JK, Ballenger M, O’Brien ET, Haase J, Superfine R, Bloom K. DNA relaxation dynamics as a probe for the intracellular environment. Proc Natl Acad Sci U S A 2009; 106:9250-5; PMID:19478070; http://dx.doi.org/10.1073/pnas.0812723106
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 9250-9255
-
-
Fisher, J.K.1
Ballenger, M.2
O’brien, E.T.3
Haase, J.4
Superfine, R.5
Bloom, K.6
-
20
-
-
84877089834
-
Nonrandom distribution of interhomolog recombination events induced by breakage of a dicentric chromosome in Saccharomyces cerevisiae
-
PMID:23410835
-
Song W, Gawel M, Dominska M, Greenwell PW, Hazkani-Covo E, Bloom K, Petes TD. Nonrandom distribution of interhomolog recombination events induced by breakage of a dicentric chromosome in Saccharomyces cerevisiae. Genetics 2013; 194:69-80; PMID:23410835; http://dx.doi.org/10.1534/ genetics.113.150144
-
(2013)
Genetics
, vol.194
, pp. 69-80
-
-
Song, W.1
Gawel, M.2
Dominska, M.3
Greenwell, P.W.4
Hazkani-Covo, E.5
Bloom, K.6
Petes, T.D.7
-
21
-
-
84892474589
-
Polycomb silencing: From linear chromatin domains to 3D chromosome folding
-
PMID:24434548
-
Cheutin T, Cavalli G. Polycomb silencing: from linear chromatin domains to 3D chromosome folding. Curr Opin Genet Dev 2014; 25:30-7; PMID:24434548; http://dx.doi.org/10.1016/j.gde.2013.11.016
-
(2014)
Curr Opin Genet Dev
, vol.25
, pp. 30-37
-
-
Cheutin, T.1
Cavalli, G.2
-
22
-
-
84861100147
-
Spatial partitioning of the regulatory landscape of the X-inactivation centre
-
PMID:22495304
-
Nora EP, Lajoie BR, Schulz EG, Giorgetti L, Okamoto I, Servant N, Piolot T, van Berkum NL, Meisig J, Sedat J, et al. Spatial partitioning of the regulatory landscape of the X-inactivation centre. Nature 2012; 485:381-5; PMID:22495304; http:// dx.doi.org/10.1038/nature11049
-
(2012)
Nature
, vol.485
, pp. 381-385
-
-
Nora, E.P.1
Lajoie, B.R.2
Schulz, E.G.3
Giorgetti, L.4
Okamoto, I.5
Servant, N.6
Piolot, T.7
Van Berkum, N.L.8
Meisig, J.9
Sedat, J.10
-
23
-
-
2142650203
-
Nuclear substructure and dynamics
-
PMID:14588256
-
Lamond AI, Sleeman JE. Nuclear substructure and dynamics. Curr Biol 2003; 13:R825-8; PMID:14588256; http://dx.doi.org/10.1016/j. cub.2003.10.012
-
(2003)
Curr Biol
, vol.13
, pp. 825-828
-
-
Lamond, A.I.1
Sleeman, J.E.2
-
24
-
-
84897474790
-
Nuclear bodies: New insights into assembly/dynamics and disease relevance
-
PMID:24704702
-
Sleeman JE, Trinkle-Mulcahy L. Nuclear bodies: new insights into assembly/dynamics and disease relevance. Curr Opin Cell Biol 2014; 28:76-83; PMID:24704702; http://dx.doi.org/10.1016/j. ceb.2014.03.004
-
(2014)
Curr Opin Cell Biol
, vol.28
, pp. 76-83
-
-
Sleeman, J.E.1
Trinkle-Mulcahy, L.2
-
25
-
-
7744220271
-
On the coarse-graining of polymers into bead-spring chains
-
Underhill PT, Doyle PS. On the coarse-graining of polymers into bead-spring chains. J Non-Newt Fluid Mech 2004; 122:3-31; http://dx.doi.org/10.1016/j. jnnfm.2003.10.006
-
(2004)
J Non-Newt Fluid Mech
, vol.122
, pp. 3-31
-
-
Underhill, P.T.1
Doyle, P.S.2
-
26
-
-
84891104242
-
Centromere tethering confines chromosome domains
-
PMID:24268574
-
Verdaasdonk JS, Vasquez PA, Barry RM, Barry T, Goodwin S, Forest MG, Bloom K. Centromere tethering confines chromosome domains. Mol Cell 2013; 52:819-31; PMID:24268574; http://dx.doi. org/10.1016/j.molcel.2013.10.021
-
(2013)
Mol Cell
, vol.52
, pp. 819-831
-
-
Verdaasdonk, J.S.1
Vasquez, P.A.2
Barry, R.M.3
Barry, T.4
Goodwin, S.5
Forest, M.G.6
Bloom, K.7
-
27
-
-
0036869237
-
Rouse chains with excluded volume interactions in steady simple shear flow
-
Prakash JR. Rouse chains with excluded volume interactions in steady simple shear flow. Journal of Rheology 2002; 46:1353-80; http://dx.doi. org/10.1122/1.1514054
-
(2002)
Journal of Rheology
, vol.46
, pp. 1353-1380
-
-
Prakash, J.R.1
-
29
-
-
77953494844
-
Bacterial chromosomal loci move subdiffusively through a viscoelastic cytoplasm
-
PMID:20867274
-
Weber SC, Spakowitz AJ, Theriot JA. Bacterial chromosomal loci move subdiffusively through a viscoelastic cytoplasm. Phys Rev Lett 2010; 104:238102; PMID:20867274; http://dx.doi.org/10.1103/ PhysRevLett.104.238102
-
(2010)
Phys Rev Lett
, vol.104
, pp. 238102
-
-
Weber, S.C.1
Spakowitz, A.J.2
Theriot, J.A.3
-
30
-
-
84860807645
-
Nonthermal ATP-dependent fluctuations contribute to the in vivo motion of chromosomal loci
-
PMID:22517744
-
Weber SC, Spakowitz AJ, Theriot JA. Nonthermal ATP-dependent fluctuations contribute to the in vivo motion of chromosomal loci. Proc Natl Acad Sci U S A 2012; 109:7338-43; PMID:22517744; http:// dx.doi.org/10.1073/pnas.1119505109
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 7338-7343
-
-
Weber, S.C.1
Spakowitz, A.J.2
Theriot, J.A.3
-
31
-
-
0036407532
-
Effect of length, topology, and concentration on the microviscosity and microheterogeneity of DNA solutions
-
PMID:12381315
-
Goodman A, Tseng Y, Wirtz D. Effect of length, topology, and concentration on the microviscosity and microheterogeneity of DNA solutions. J Mol Biol 2002; 323:199-215; PMID:12381315; http://dx.doi. org/10.1016/S0022-2836(02)00893-8
-
(2002)
J Mol Biol
, vol.323
, pp. 199-215
-
-
Goodman, A.1
Tseng, Y.2
Wirtz, D.3
-
33
-
-
0033593366
-
Compartmentalization of interphase chromosomes observed in simulation and experiment
-
PMID:9887267
-
Münkel C, Eils R, Dietzel S, Zink D, Mehring C, Wedemann G, Cremer T, Langowski J. Compartmentalization of interphase chromosomes observed in simulation and experiment. J Mol Biol 1999; 285:1053-65; PMID:9887267; http://dx.doi. org/10.1006/jmbi.1998.2361
-
(1999)
J Mol Biol
, vol.285
, pp. 1053-1065
-
-
Münkel, C.1
Eils, R.2
Dietzel, S.3
Zink, D.4
Mehring, C.5
Wedemann, G.6
Cremer, T.7
Langowski, J.8
-
34
-
-
84892652403
-
Nuclear mechanics: Lamin webs and pathological blebs
-
PMID:23697996
-
Broedersz CP, Brangwynne CP. Nuclear mechanics: lamin webs and pathological blebs. Nucleus 2013; 4:156-9; PMID:23697996; http://dx.doi. org/10.4161/nucl.25019
-
(2013)
Nucleus
, vol.4
, pp. 156-159
-
-
Broedersz, C.P.1
Brangwynne, C.P.2
-
35
-
-
84860500314
-
Increased mobility of double-strand breaks requires Mec1, Rad9 and the homologous recombination machinery
-
PMID:22484486
-
Dion V, Kalck V, Horigome C, Towbin BD, Gasser SM. Increased mobility of double-strand breaks requires Mec1, Rad9 and the homologous recombination machinery. Nat Cell Biol 2012; 14:502-9; PMID:22484486; http://dx.doi.org/10.1038/ ncb2465
-
(2012)
Nat Cell Biol
, vol.14
, pp. 502-509
-
-
Dion, V.1
Kalck, V.2
Horigome, C.3
Towbin, B.D.4
Gasser, S.M.5
-
36
-
-
84860517399
-
Increased chromosome mobility facilitates homology search during recombination
-
PMID:22484485
-
Miné-Hattab J, Rothstein R. Increased chromosome mobility facilitates homology search during recombination. Nat Cell Biol 2012; 14:510-7; PMID:22484485; http://dx.doi.org/10.1038/ ncb2472
-
(2012)
Nat Cell Biol
, vol.14
, pp. 510-517
-
-
Miné-hattab, J.1
Rothstein, R.2
|