-
1
-
-
33747353951
-
Arsenic and selenium in microbial metabolism
-
16704340
-
Stolz JF, Basu P, Santini JM, Oremland RS. Arsenic and selenium in microbial metabolism. Annu Rev Microbiol 2006, 60:107-130. 10.1146/annurev.micro.60.080805.142053, 16704340.
-
(2006)
Annu Rev Microbiol
, vol.60
, pp. 107-130
-
-
Stolz, J.F.1
Basu, P.2
Santini, J.M.3
Oremland, R.S.4
-
2
-
-
77954623707
-
Complications with remediation strategies involving the biodegradation and detoxification of recalcitrant contaminant aromatic hydrocarbons
-
20542318
-
Frenzel M, Scarlett A, Rowland SJ, Galloway TS, Burton SK, Lappin-Scott HM, Booth AM. Complications with remediation strategies involving the biodegradation and detoxification of recalcitrant contaminant aromatic hydrocarbons. Sci Total Environ 2010, 408:4093-4101. 10.1016/j.scitotenv.2010.04.042, 20542318.
-
(2010)
Sci Total Environ
, vol.408
, pp. 4093-4101
-
-
Frenzel, M.1
Scarlett, A.2
Rowland, S.J.3
Galloway, T.S.4
Burton, S.K.5
Lappin-Scott, H.M.6
Booth, A.M.7
-
3
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
239358, 7535888
-
Amann RI, Ludwig W, Schleifer KH. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 1995, 59:143-169. 239358, 7535888.
-
(1995)
Microbiol Rev
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
4
-
-
33947226782
-
Structural and functional diversity of the microbial kinome
-
1821047, 17355172
-
Kannan N, Taylor SS, Zhai Y, Venter JC, Manning G. Structural and functional diversity of the microbial kinome. PLoS Biol 2007, 5:e17. 10.1371/journal.pbio.0050017, 1821047, 17355172.
-
(2007)
PLoS Biol
, vol.5
, pp. e17
-
-
Kannan, N.1
Taylor, S.S.2
Zhai, Y.3
Venter, J.C.4
Manning, G.5
-
5
-
-
58149505604
-
Discovering functional novelty in metagenomes: examples from light-mediated processes
-
2612456, 18849420
-
Singh AH, Doerks T, Letunic I, Raes J, Bork P. Discovering functional novelty in metagenomes: examples from light-mediated processes. J Bacteriol 2009, 191:32-41. 10.1128/JB.01084-08, 2612456, 18849420.
-
(2009)
J Bacteriol
, vol.191
, pp. 32-41
-
-
Singh, A.H.1
Doerks, T.2
Letunic, I.3
Raes, J.4
Bork, P.5
-
6
-
-
84887212381
-
Biogeography of photosynthetic light-harvesting genes in marine phytoplankton
-
2644788, 19240807
-
Bibby TS, Zhang Y, Chen M. Biogeography of photosynthetic light-harvesting genes in marine phytoplankton. PLoS ONE 2009, 4:e4601. 10.1371/journal.pone.0004601, 2644788, 19240807.
-
(2009)
PLoS ONE
, vol.4
, pp. e4601
-
-
Bibby, T.S.1
Zhang, Y.2
Chen, M.3
-
7
-
-
84875045322
-
Ecogenomic perspectives on domains of unknown function: correlation-based exploration of marine metagenomes
-
3597751, 23516388
-
Buttigieg PL, Hankeln W, Kostadinov I, Kottmann R, Yilmaz P, Duhaime MB, Glöckner FO. Ecogenomic perspectives on domains of unknown function: correlation-based exploration of marine metagenomes. PLoS ONE 2013, 8:e50869. 10.1371/journal.pone.0050869, 3597751, 23516388.
-
(2013)
PLoS ONE
, vol.8
, pp. e50869
-
-
Buttigieg, P.L.1
Hankeln, W.2
Kostadinov, I.3
Kottmann, R.4
Yilmaz, P.5
Duhaime, M.B.6
Glöckner, F.O.7
-
8
-
-
83555174830
-
Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw
-
Mackelprang R, Waldrop MP, Deangelis KM, David MM, Chavarria KL, Blazewicz SJ, Rubin EM, Jansson JK. Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw. Nature 2011,
-
(2011)
Nature
-
-
Mackelprang, R.1
Waldrop, M.P.2
Deangelis, K.M.3
David, M.M.4
Chavarria, K.L.5
Blazewicz, S.J.6
Rubin, E.M.7
Jansson, J.K.8
-
9
-
-
79951882096
-
Pyrosequencing of antibiotic-contaminated river sediments reveals high levels of resistance and gene transfer elements
-
3040208, 21359229
-
Kristiansson E, Fick J, Janzon A, Grabic R, Rutgersson C, Weijdegård B, Söderström H, Larsson DGJ. Pyrosequencing of antibiotic-contaminated river sediments reveals high levels of resistance and gene transfer elements. PLoS ONE 2011, 6:e17038. 10.1371/journal.pone.0017038, 3040208, 21359229.
-
(2011)
PLoS ONE
, vol.6
, pp. e17038
-
-
Kristiansson, E.1
Fick, J.2
Janzon, A.3
Grabic, R.4
Rutgersson, C.5
Weijdegård, B.6
Söderström, H.7
Larsson, D.G.J.8
-
10
-
-
77951499585
-
Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community
-
20182523
-
Hemme CL, Deng Y, Gentry TJ, Fields MW, Wu L, Barua S, Barry KW, Tringe SG, Watson DB, He Z, Hazen TC, Tiedje JM, Rubin EM, Zhou J. Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community. ISME J 2010, 4:660-672. 10.1038/ismej.2009.154, 20182523.
-
(2010)
ISME J
, vol.4
, pp. 660-672
-
-
Hemme, C.L.1
Deng, Y.2
Gentry, T.J.3
Fields, M.W.4
Wu, L.5
Barua, S.6
Barry, K.W.7
Tringe, S.G.8
Watson, D.B.9
He, Z.10
Hazen, T.C.11
Tiedje, J.M.12
Rubin, E.M.13
Zhou, J.14
-
11
-
-
84885191203
-
Microbial community adaptation to quaternary ammonium biocides as revealed by metagenomics
-
Oh S, Tandukar M, Pavlostathis SG, Chain PSG, Konstantinidis KT. Microbial community adaptation to quaternary ammonium biocides as revealed by metagenomics. Environ Microbiol 2013, 15:2850-2864.
-
(2013)
Environ Microbiol
, vol.15
, pp. 2850-2864
-
-
Oh, S.1
Tandukar, M.2
Pavlostathis, S.G.3
Chain, P.S.G.4
Konstantinidis, K.T.5
-
12
-
-
84891782659
-
Pfam: the protein families database
-
3965110, 24288371
-
Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, Heger A, Hetherington K, Holm L, Mistry J, Sonnhammer ELL, Tate J, Punta M. Pfam: the protein families database. Nucleic Acids Res 2014, 42:D222-D230. 10.1093/nar/gkt1223, 3965110, 24288371.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D222-D230
-
-
Finn, R.D.1
Bateman, A.2
Clements, J.3
Coggill, P.4
Eberhardt, R.Y.5
Eddy, S.R.6
Heger, A.7
Hetherington, K.8
Holm, L.9
Mistry, J.10
Sonnhammer, E.L.L.11
Tate, J.12
Punta, M.13
-
13
-
-
84858602406
-
InterPro in 2011: new developments in the family and domain prediction database
-
3245097, 22096229
-
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S, De Castro E, Coggill P, Corbett M, Das U, Daugherty L, Duquenne L, Finn RD, Fraser M, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, et al. InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res 2012, 40(Database issue):D306-D312. 3245097, 22096229.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.DATABASE ISSUE
, pp. D306-D312
-
-
Hunter, S.1
Jones, P.2
Mitchell, A.3
Apweiler, R.4
Attwood, T.K.5
Bateman, A.6
Bernard, T.7
Binns, D.8
Bork, P.9
Burge, S.10
De Castro, E.11
Coggill, P.12
Corbett, M.13
Das, U.14
Daugherty, L.15
Duquenne, L.16
Finn, R.D.17
Fraser, M.18
Gough, J.19
Haft, D.20
Hulo, N.21
Kahn, D.22
Kelly, E.23
Letunic, I.24
Lonsdale, D.25
Lopez, R.26
Madera, M.27
Maslen, J.28
McAnulla, C.29
McDowall, J.30
more..
-
14
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
-
3037419, 10802651
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 2000, 25:25-29. 10.1038/75556, 3037419, 10802651.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
15
-
-
84949130073
-
HMMER
-
Eddy S. HMMER. [http://hmmer.janelia.org/].
-
-
-
Eddy, S.1
-
17
-
-
33845986334
-
Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA
-
1716261, 17151342
-
Freyhult EK, Bollback JP, Gardner PP. Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA. Genome Res 2007, 17:117-125. 1716261, 17151342.
-
(2007)
Genome Res
, vol.17
, pp. 117-125
-
-
Freyhult, E.K.1
Bollback, J.P.2
Gardner, P.P.3
-
18
-
-
75549090603
-
The Pfam protein families database
-
2808889, 19920124
-
Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer ELL, Eddy SR, Bateman A. The Pfam protein families database. Nucleic Acids Res 2010, 38(Database issue):D211-D222. 2808889, 19920124.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.DATABASE ISSUE
, pp. D211-D222
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
Pollington, J.E.6
Gavin, O.L.7
Gunasekaran, P.8
Ceric, G.9
Forslund, K.10
Holm, L.11
Sonnhammer, E.L.L.12
Eddy, S.R.13
Bateman, A.14
-
19
-
-
33947235074
-
The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families
-
1821046, 17355171
-
Yooseph S, Sutton G, Rusch DB, Halpern AL, Williamson SJ, Remington K, Eisen JA, Heidelberg KB, Manning G, Li W, Jaroszewski L, Cieplak P, Miller CS, Li H, Mashiyama ST, Joachimiak MP, Van Belle C, Chandonia J-M, Soergel DA, Zhai Y, Natarajan K, Lee S, Raphael BJ, Bafna V, Friedman R, Brenner SE, Godzik A, Eisenberg D, Dixon JE, Taylor SS, et al. The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. PLoS Biol 2007, 5:e16. 10.1371/journal.pbio.0050016, 1821046, 17355171.
-
(2007)
PLoS Biol
, vol.5
, pp. e16
-
-
Yooseph, S.1
Sutton, G.2
Rusch, D.B.3
Halpern, A.L.4
Williamson, S.J.5
Remington, K.6
Eisen, J.A.7
Heidelberg, K.B.8
Manning, G.9
Li, W.10
Jaroszewski, L.11
Cieplak, P.12
Miller, C.S.13
Li, H.14
Mashiyama, S.T.15
Joachimiak, M.P.16
Van Belle, C.17
Chandonia, J.-M.18
Soergel, D.A.19
Zhai, Y.20
Natarajan, K.21
Lee, S.22
Raphael, B.J.23
Bafna, V.24
Friedman, R.25
Brenner, S.E.26
Godzik, A.27
Eisenberg, D.28
Dixon, J.E.29
Taylor, S.S.30
more..
-
20
-
-
72749084211
-
An atlas of the thioredoxin fold class reveals the complexity of function-enabling adaptations
-
2757866, 19851441
-
Atkinson HJ, Babbitt PC. An atlas of the thioredoxin fold class reveals the complexity of function-enabling adaptations. PLoS Comput Biol 2009, 5:e1000541. 10.1371/journal.pcbi.1000541, 2757866, 19851441.
-
(2009)
PLoS Comput Biol
, vol.5
, pp. e1000541
-
-
Atkinson, H.J.1
Babbitt, P.C.2
-
21
-
-
33744784298
-
An application of statistics to comparative metagenomics
-
1473205, 16549025
-
Rodriguez-Brito B, Rohwer F, Edwards RA. An application of statistics to comparative metagenomics. BMC Bioinformatics 2006, 7:162. 10.1186/1471-2105-7-162, 1473205, 16549025.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 162
-
-
Rodriguez-Brito, B.1
Rohwer, F.2
Edwards, R.A.3
-
22
-
-
70349993601
-
ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes
-
19696045
-
Kristiansson E, Hugenholtz P, Dalevi D. ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes. Bioinformatics 2009, 25:2737-2738. 10.1093/bioinformatics/btp508, 19696045.
-
(2009)
Bioinformatics
, vol.25
, pp. 2737-2738
-
-
Kristiansson, E.1
Hugenholtz, P.2
Dalevi, D.3
-
23
-
-
71749111168
-
Analysis and comparison of very large metagenomes with fast clustering and functional annotation
-
2774329, 19863816
-
Li W. Analysis and comparison of very large metagenomes with fast clustering and functional annotation. BMC Bioinformatics 2009, 10:359. 10.1186/1471-2105-10-359, 2774329, 19863816.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 359
-
-
Li, W.1
-
24
-
-
78149272458
-
Genomic and functional adaptation in surface ocean planktonic prokaryotes
-
21048761
-
Yooseph S, Nealson KH, Rusch DB, McCrow JP, Dupont CL, Kim M, Johnson J, Montgomery R, Ferriera S, Beeson KY, Williamson SJ, Tovchigrechko A, Allen AE, Zeigler LA, Sutton G, Eisenstadt E, Rogers Y-H, Friedman R, Frazier M, Venter JC. Genomic and functional adaptation in surface ocean planktonic prokaryotes. Nature 2010, 468:60-66. 10.1038/nature09530, 21048761.
-
(2010)
Nature
, vol.468
, pp. 60-66
-
-
Yooseph, S.1
Nealson, K.H.2
Rusch, D.B.3
McCrow, J.P.4
Dupont, C.L.5
Kim, M.6
Johnson, J.7
Montgomery, R.8
Ferriera, S.9
Beeson, K.Y.10
Williamson, S.J.11
Tovchigrechko, A.12
Allen, A.E.13
Zeigler, L.A.14
Sutton, G.15
Eisenstadt, E.16
Rogers, Y.-H.17
Friedman, R.18
Frazier, M.19
Venter, J.C.20
more..
-
25
-
-
23844446418
-
Genome streamlining in a cosmopolitan oceanic bacterium
-
16109880
-
Giovannoni SJ, Tripp HJ, Givan S, Podar M, Vergin KL, Baptista D, Bibbs L, Eads J, Richardson TH, Noordewier M, Rappé MS, Short JM, Carrington JC, Mathur EJ. Genome streamlining in a cosmopolitan oceanic bacterium. Science 2005, 309:1242-1245. 10.1126/science.1114057, 16109880.
-
(2005)
Science
, vol.309
, pp. 1242-1245
-
-
Giovannoni, S.J.1
Tripp, H.J.2
Givan, S.3
Podar, M.4
Vergin, K.L.5
Baptista, D.6
Bibbs, L.7
Eads, J.8
Richardson, T.H.9
Noordewier, M.10
Rappé, M.S.11
Short, J.M.12
Carrington, J.C.13
Mathur, E.J.14
-
26
-
-
57349122987
-
Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter
-
18670397
-
Ivars-Martinez E, Martín-Cuadrado A-B, D'Auria G, Mira A, Ferriera S, Johnson J, Friedman R, Rodríguez-Valera F. Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter. ISME J 2008, 2:1194-1212. 10.1038/ismej.2008.74, 18670397.
-
(2008)
ISME J
, vol.2
, pp. 1194-1212
-
-
Ivars-Martinez, E.1
Martín-Cuadrado, A.-B.2
D'Auria, G.3
Mira, A.4
Ferriera, S.5
Johnson, J.6
Friedman, R.7
Rodríguez-Valera, F.8
-
27
-
-
79251649939
-
Characterization of cyanate metabolism in marine Synechococcus and Prochlorococcus spp
-
3019706, 21057026
-
Kamennaya NA, Post AF. Characterization of cyanate metabolism in marine Synechococcus and Prochlorococcus spp. Appl Environ Microbiol 2011, 77:291-301. 10.1128/AEM.01272-10, 3019706, 21057026.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 291-301
-
-
Kamennaya, N.A.1
Post, A.F.2
-
28
-
-
78751579173
-
Comparative genomics reveals a deep-sea sediment-adapted life style of Pseudoalteromonas sp. SM9913
-
3105692, 20703316
-
Qin Q-L, Li Y, Zhang Y-J, Zhou Z-M, Zhang W-X, Chen X-L, Zhang X-Y, Zhou B-C, Wang L, Zhang Y-Z. Comparative genomics reveals a deep-sea sediment-adapted life style of Pseudoalteromonas sp. SM9913. ISME J 2011, 5:274-284. 10.1038/ismej.2010.103, 3105692, 20703316.
-
(2011)
ISME J
, vol.5
, pp. 274-284
-
-
Qin, Q.-L.1
Li, Y.2
Zhang, Y.-J.3
Zhou, Z.-M.4
Zhang, W.-X.5
Chen, X.-L.6
Zhang, X.-Y.7
Zhou, B.-C.8
Wang, L.9
Zhang, Y.-Z.10
-
29
-
-
79955587314
-
Genomic potential of Marinobacter aquaeolei, a biogeochemical opportunitroph
-
3126349, 21335390
-
Singer E, Webb EA, Nelson WC, Heidelberg JF, Ivanova N, Pati A, Edwards KJ. Genomic potential of Marinobacter aquaeolei, a biogeochemical opportunitroph. Appl Environ Microbiol 2011, 77:2763-2771. 10.1128/AEM.01866-10, 3126349, 21335390.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 2763-2771
-
-
Singer, E.1
Webb, E.A.2
Nelson, W.C.3
Heidelberg, J.F.4
Ivanova, N.5
Pati, A.6
Edwards, K.J.7
-
30
-
-
33947238287
-
The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific
-
1821060, 17355176
-
Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, Yooseph S, Wu D, Eisen JA, Hoffman JM, Remington K, Beeson KY, Tran B, Smith H, Baden-Tillson H, Stewart C, Thorpe J, Freeman J, Andrews-Pfannkoch C, Venter JE, Li K, Kravitz S, Heidelberg JF, Utterback T, Rogers Y-H, Falcón LI, Souza V, Bonilla-Rosso G, Eguiarte LE, Karl DM, Sathyendranath S, et al. The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol 2007, 5:e77. 10.1371/journal.pbio.0050077, 1821060, 17355176.
-
(2007)
PLoS Biol
, vol.5
, pp. e77
-
-
Rusch, D.B.1
Halpern, A.L.2
Sutton, G.3
Heidelberg, K.B.4
Williamson, S.5
Yooseph, S.6
Wu, D.7
Eisen, J.A.8
Hoffman, J.M.9
Remington, K.10
Beeson, K.Y.11
Tran, B.12
Smith, H.13
Baden-Tillson, H.14
Stewart, C.15
Thorpe, J.16
Freeman, J.17
Andrews-Pfannkoch, C.18
Venter, J.E.19
Li, K.20
Kravitz, S.21
Heidelberg, J.F.22
Utterback, T.23
Rogers, Y.-H.24
Falcón, L.I.25
Souza, V.26
Bonilla-Rosso, G.27
Eguiarte, L.E.28
Karl, D.M.29
Sathyendranath, S.30
more..
-
31
-
-
33947215475
-
CAMERA: a community resource for metagenomics
-
1821059, 17355175
-
Seshadri R, Kravitz SA, Smarr L, Gilna P, Frazier M. CAMERA: a community resource for metagenomics. PLoS Biol 2007, 5:e75. 10.1371/journal.pbio.0050075, 1821059, 17355175.
-
(2007)
PLoS Biol
, vol.5
, pp. e75
-
-
Seshadri, R.1
Kravitz, S.A.2
Smarr, L.3
Gilna, P.4
Frazier, M.5
-
32
-
-
19144362371
-
Microbial community genomics in the ocean
-
15886695
-
Delong EF. Microbial community genomics in the ocean. Nat Rev Microbiol 2005, 3:459-469. 10.1038/nrmicro1158, 15886695.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 459-469
-
-
Delong, E.F.1
-
33
-
-
77954227260
-
Analysis of membrane proteins in metagenomics: networks of correlated environmental features and protein families
-
2892097, 20430783
-
Patel PV, Gianoulis TA, Bjornson RD, Yip KY, Engelman DM, Gerstein MB. Analysis of membrane proteins in metagenomics: networks of correlated environmental features and protein families. Genome Res 2010, 20:960-971. 10.1101/gr.102814.109, 2892097, 20430783.
-
(2010)
Genome Res
, vol.20
, pp. 960-971
-
-
Patel, P.V.1
Gianoulis, T.A.2
Bjornson, R.D.3
Yip, K.Y.4
Engelman, D.M.5
Gerstein, M.B.6
-
34
-
-
79959847334
-
Trait variation in yeast is defined by population history
-
3116910, 21698134
-
Warringer J, Zörgö E, Cubillos FA, Zia A, Gjuvsland A, Simpson JT, Forsmark A, Durbin R, Omholt SW, Louis EJ, Liti G, Moses A, Blomberg A. Trait variation in yeast is defined by population history. PLoS Genet 2011, 7:e1002111. 10.1371/journal.pgen.1002111, 3116910, 21698134.
-
(2011)
PLoS Genet
, vol.7
, pp. e1002111
-
-
Warringer, J.1
Zörgö, E.2
Cubillos, F.A.3
Zia, A.4
Gjuvsland, A.5
Simpson, J.T.6
Forsmark, A.7
Durbin, R.8
Omholt, S.W.9
Louis, E.J.10
Liti, G.11
Moses, A.12
Blomberg, A.13
-
35
-
-
0026773382
-
Amplification and rearrangement of a prokaryotic metallothionein locus smt in Synechococcus PCC 6301 selected for tolerance to cadmium
-
1354365
-
Gupta A, Whitton BA, Morby AP, Huckle JW, Robinson NJ. Amplification and rearrangement of a prokaryotic metallothionein locus smt in Synechococcus PCC 6301 selected for tolerance to cadmium. Proc Biol Sci 1992, 248:273-281. 10.1098/rspb.1992.0072, 1354365.
-
(1992)
Proc Biol Sci
, vol.248
, pp. 273-281
-
-
Gupta, A.1
Whitton, B.A.2
Morby, A.P.3
Huckle, J.W.4
Robinson, N.J.5
-
36
-
-
84867023857
-
Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph
-
3458243, 23019517
-
López-Pérez M, Gonzaga A, Martín-Cuadrado A-B, Onyshchenko O, Ghavidel A, Ghai R, Rodríguez-Valera F. Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph. Sci Rep 2012, 2:696. 3458243, 23019517.
-
(2012)
Sci Rep
, vol.2
, pp. 696
-
-
López-Pérez, M.1
Gonzaga, A.2
Martín-Cuadrado, A.-B.3
Onyshchenko, O.4
Ghavidel, A.5
Ghai, R.6
Rodríguez-Valera, F.7
-
37
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
15001713
-
Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, Wu D, Paulsen I, Nelson KE, Nelson W, Fouts DE, Levy S, Knap AH, Lomas MW, Nealson K, White O, Peterson J, Hoffman J, Parsons R, Baden-Tillson H, Pfannkoch C, Rogers Y-H, Smith HO. Environmental genome shotgun sequencing of the Sargasso Sea. Science 2004, 304:66-74. 10.1126/science.1093857, 15001713.
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
Eisen, J.A.6
Wu, D.7
Paulsen, I.8
Nelson, K.E.9
Nelson, W.10
Fouts, D.E.11
Levy, S.12
Knap, A.H.13
Lomas, M.W.14
Nealson, K.15
White, O.16
Peterson, J.17
Hoffman, J.18
Parsons, R.19
Baden-Tillson, H.20
Pfannkoch, C.21
Rogers, Y.-H.22
Smith, H.O.23
more..
-
38
-
-
79958071293
-
Metagenomics and the protein universe
-
3118404, 21497084
-
Godzik A. Metagenomics and the protein universe. Curr Opin Struct Biol 2011, 21:398-403. 10.1016/j.sbi.2011.03.010, 3118404, 21497084.
-
(2011)
Curr Opin Struct Biol
, vol.21
, pp. 398-403
-
-
Godzik, A.1
-
39
-
-
33645220455
-
Oxidative stress in marine environments: biochemistry and physiological ecology
-
16460273
-
Lesser MP. Oxidative stress in marine environments: biochemistry and physiological ecology. Annu Rev Physiol 2006, 68:253-278. 10.1146/annurev.physiol.68.040104.110001, 16460273.
-
(2006)
Annu Rev Physiol
, vol.68
, pp. 253-278
-
-
Lesser, M.P.1
-
40
-
-
67650859628
-
Occurrence, phylogeny, structure, and function of catalases and peroxidases in cyanobacteria
-
19129167
-
Bernroitner M, Zamocky M, Furtmüller PG, Peschek GA, Obinger C. Occurrence, phylogeny, structure, and function of catalases and peroxidases in cyanobacteria. J Exp Bot 2009, 60:423-440. 10.1093/jxb/ern309, 19129167.
-
(2009)
J Exp Bot
, vol.60
, pp. 423-440
-
-
Bernroitner, M.1
Zamocky, M.2
Furtmüller, P.G.3
Peschek, G.A.4
Obinger, C.5
-
41
-
-
84864611407
-
Molecular evolution of hydrogen peroxide degrading enzymes
-
3523812, 22330759
-
Zamocky M, Gasselhuber B, Furtmüller PG, Obinger C. Molecular evolution of hydrogen peroxide degrading enzymes. Arch Biochem Biophys 2012, 525:131-144. 10.1016/j.abb.2012.01.017, 3523812, 22330759.
-
(2012)
Arch Biochem Biophys
, vol.525
, pp. 131-144
-
-
Zamocky, M.1
Gasselhuber, B.2
Furtmüller, P.G.3
Obinger, C.4
-
42
-
-
84871837405
-
Evolution of saxitoxin synthesis in cyanobacteria and dinoflagellates
-
3525144, 22628533
-
Hackett JD, Wisecaver JH, Brosnahan ML, Kulis DM, Anderson DM, Bhattacharya D, Plumley FG, Erdner DL. Evolution of saxitoxin synthesis in cyanobacteria and dinoflagellates. Mol Biol Evol 2013, 30:70-78. 10.1093/molbev/mss142, 3525144, 22628533.
-
(2013)
Mol Biol Evol
, vol.30
, pp. 70-78
-
-
Hackett, J.D.1
Wisecaver, J.H.2
Brosnahan, M.L.3
Kulis, D.M.4
Anderson, D.M.5
Bhattacharya, D.6
Plumley, F.G.7
Erdner, D.L.8
-
43
-
-
84870854383
-
Cyanobacterial toxins: biosynthetic routes and evolutionary roots
-
23051004
-
Dittmann E, Fewer DP, Neilan BA. Cyanobacterial toxins: biosynthetic routes and evolutionary roots. FEMS Microbiol Rev 2013, 37:23-43. 10.1111/j.1574-6976.2012.12000.x, 23051004.
-
(2013)
FEMS Microbiol Rev
, vol.37
, pp. 23-43
-
-
Dittmann, E.1
Fewer, D.P.2
Neilan, B.A.3
-
44
-
-
77955299705
-
Neurotoxic alkaloids: saxitoxin and its analogs
-
2920551, 20714432
-
Wiese M, D'Agostino PM, Mihali TK, Moffitt MC, Neilan BA. Neurotoxic alkaloids: saxitoxin and its analogs. Mar Drugs 2010, 8:2185-2211. 10.3390/md8072185, 2920551, 20714432.
-
(2010)
Mar Drugs
, vol.8
, pp. 2185-2211
-
-
Wiese, M.1
D'Agostino, P.M.2
Mihali, T.K.3
Moffitt, M.C.4
Neilan, B.A.5
-
45
-
-
0033968660
-
Cyanobacterial cell walls: news from an unusual prokaryotic envelope
-
94402, 10671437
-
Hoiczyk E, Hansel A. Cyanobacterial cell walls: news from an unusual prokaryotic envelope. J Bacteriol 2000, 182:1191-1199. 10.1128/JB.182.5.1191-1199.2000, 94402, 10671437.
-
(2000)
J Bacteriol
, vol.182
, pp. 1191-1199
-
-
Hoiczyk, E.1
Hansel, A.2
-
46
-
-
57749084589
-
A new family of cyanobacterial penicillin-binding proteins. A missing link in the evolution of class A beta-lactamases
-
18801739
-
Urbach C, Fastrez J, Soumillion P. A new family of cyanobacterial penicillin-binding proteins. A missing link in the evolution of class A beta-lactamases. J Biol Chem 2008, 283:32516-32526. 10.1074/jbc.M805375200, 18801739.
-
(2008)
J Biol Chem
, vol.283
, pp. 32516-32526
-
-
Urbach, C.1
Fastrez, J.2
Soumillion, P.3
-
47
-
-
79961135005
-
-
Vienna, Austria: R Foundation for Statistical Computing
-
R Development Core Team R: a Language and Environment for Statistical Computing 2011, Vienna, Austria: R Foundation for Statistical Computing, R Development Core Team.
-
(2011)
R: a Language and Environment for Statistical Computing
-
-
-
48
-
-
0242281980
-
Bioconductor R packages for exploratory analysis and normalization of cDNA microarray data
-
New York: Springer, Parmingiani G, Garrett ES, Irizarry RA, Zeger SL
-
Dudoit S, Yang YH. Bioconductor R packages for exploratory analysis and normalization of cDNA microarray data. The Analysis of Gene Expression Data: Methods and Software 2002, New York: Springer, Parmingiani G, Garrett ES, Irizarry RA, Zeger SL.
-
(2002)
The Analysis of Gene Expression Data: Methods and Software
-
-
Dudoit, S.1
Yang, Y.H.2
-
49
-
-
84855739893
-
Another Multidimensional Analysis Package
-
Lucas A. Another Multidimensional Analysis Package. [http://CRAN.R-project.org/package=amap].
-
-
-
Lucas, A.1
-
50
-
-
78650575601
-
Gplots: Various R programming tools for plotting data
-
Warnes GR, Bolker B, Bonebakker L, Gentleman R, Liaw WHA, Lumley T, Maechler M, Magnusson A, Moeller S, Schwartz M, Venables B. gplots: Various R programming tools for plotting data. [http://CRAN.R-project.org/package=gplots].
-
-
-
Warnes, G.R.1
Bolker, B.2
Bonebakker, L.3
Gentleman, R.4
Liaw, W.H.A.5
Lumley, T.6
Maechler, M.7
Magnusson, A.8
Moeller, S.9
Schwartz, M.10
Venables, B.11
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