Strong influence of the littoral zone on sedimentary lipid biomarkers in a meromictic lake

Geobiology

Volumn 12, Issue 6, 2014, Pages 529-541

  Bovee, R J ^a   Pearson, A ^a  

^a HARVARD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84907953614     PISSN: 14724677     EISSN: 14724669     Source Type: Journal    
DOI: 10.1111/gbi.12099     Document Type: Article

References (86)

1. Airs RL, Atkinson JE, Keely BJ (2001) Development and application of a high resolution liquid chromatographic method for the analysis of complex pigment distributions. Journal of Chromatography A 917, 167-177.
2. Aller RC (1998) Mobile deltaic and continental shelf muds as suboxic, fluidized bed reactors. Marine Chemistry 61, 143-155.
3. 2 acquisition by the CBB cycle. Journal of Experimental Botany 59, 1525.
4. Bligh EG, Dyer WJ (1959) A rapid method of total lipid extraction and purification. Canadian Journal of Biochemistry and Physiology 37, 911-917.
5. Brocks JJ, Schaeffer P (2008) Okenane, a biomarker for purple sulfur bacteria (Chromatiaceae), and other new carotenoid derivatives from the 1640 Ma Barney Creek Formation. Geochimica et Cosmochimica Acta 72, 1396-1414.
6. Brocks JJ, Love GD, Summons RE, Knoll AH, Logan GA, Bowden SA (2005) Biomarker evidence for green and purple sulphur bacteria in a stratified Palaeoproterozoic sea. Nature 437, 866-870.
7. Brooks JR, Flanagan LB, Ehleringer JR (1998) Responses of boreal conifers to climate fluctuations: indications from tree-ring widths and carbon isotope analyses. Canadian Journal of Forest Research 28, 524-533.
8. Canfield DE, Teske A (1996) Late Proterozoic rise in atmospheric oxygen concentration inferred from phylogenetic and sulphur-isotope studies. Nature 382, 127-132.
9. Cawker KB (1983) Fire history and grassland vegetation change: three pollen diagrams from southern British Columbia. Canadian Journal of Botany 61, 1126-1139.
10. Close HG, Bovee R, Pearson A (2011) Inverse carbon isotope patterns of lipids and kerogen record heterogeneous primary biomass. Geobiology 9, 250-265.
11. Close HG, Shah SR, Ingalls AE, Diefendorf AF, Brodie EL, Hansman RL, Freeman KH, Aluwihare LI, Pearson A (2013) Export of submicron particulate organic matter to mesopelagic depth in an oligotrophic gyre. Proceedings of the National Academy of Sciences of the USA 110, 12565-12570.
12. Coffin RB, Velinsky DJ, Devereux R, Price WA, Cifuentes LA (1990) Stable carbon isotope analysis of nucleic acids to trace sources of dissolved substrated used by estuarine bacteria. Applied and Environmental Microbiology 56, 2012-2020.
13. Collister JW, Lichtfouse E, Hieshima G, Hayes JM (1994) Partial resolution of sources of n-alkanes in the saline portion of the Parachute Creek Member, Green River Formation (Piceance Creek Basin, Colorado). Organic Geochemistry 21, 645-659.
14. Coolen MJL, Overmann J (1998) Analysis of subfossil molecular remains of purple sulfur bacteria in a lake sediment. Applied and Environmental Microbiology 64, 4513-4521.
15. Coolen MJL, Overmann J (2007) 217 000-year-old DNA sequences of green sulfur bacteria in Mediterranean sapropels and their implications for the reconstruction of the paleoenvironment. Environmental Microbiology 9, 238-249.
16. Cranwell PA (1981) Diagenesis of free and bound lipids in terrestrial detritus deposited in a lacustrine sediment. Organic Geochemistry 3, 79-89.
17. DeNiro MJ, Epstein S (1978) Influence of diet on the distribution of carbon isotopes in animals. Geochimica et Cosmochimica Acta 42, 495-506.
18. Diefendorf AF, Mueller KE, Wing SL, Koch PL, Freeman KH (2010) Global patterns in leaf 13C discrimination and implications for studies of past and future climate. Proceedings of the National Academy of Sciences of the USA 107, 5738-5743.
19. 14C measurements. Marine Chemistry 103, 146-162.
20. 13C characteristics of higher plant biomarkers in Washington margin surface sediments. Geochimica et Cosmochimica Acta 105, 14-30.
21. French KL, Sepúlveda J, Trabucho-Alexandre J, Gröcke DR, Summons RE (2014) Organic geochemistry of the early Toarcian oceanic anoxic event in Hawsker Bottoms, Yorkshire, England. Earth and Planetary Science Letters 390, 116-127.
22. Fry B (1986) Sources of carbon and sulfur nutrition for consumers in three meromictic lakes of New York State. Limnology and Oceanography 31, 79-88.
23. Galy V, Eglinton T, France-Lanord C, Sylva S (2011) The provenance of vegetation and environmental signatures encoded in vascular plant biomarkers carried by the Ganges-Brahmaputra rivers. Earth and Planetary Science Letters 304, 1-12.
24. Gambacorta A, Pagnotta E, Romano I, Sodano G, Trincone A (1998) Heterocyst glycolipids from nitrogen-fixing cyanobacteria other than nostocaceae. Phytochemistry 48, 801-805.
25. Gong C, Hollander DJ (1997) Differential contribution of bacteria to sedimentary organic matter in oxic and anoxic environments, Santa Monica Basin, California. Organic Geochemistry 26, 545-563.
26. Grice K, Cao C, Love GD, Twitchett RJ, Bottcher M, Grosjean E, Summons RE, Turgeon SC, Dunning W, Jin Y (2005) Photic zone euxinia during the Permian-Triassic superanoxic event. Science 307, 706-709.
27. Hall KJ, Northcote TG (1990) Production and decomposition processes in a saline meromictic lake. Hydrobiologia 197, 115-128.
28. Hamilton TL, Bovee RJ, Sattin SR, Mohr W, Schaperdoth I, Gilhooly WP, Lyons TW, Pearson A, Macalady JL (2014) Coupled reductive and oxidative sulfur cycling in the phototrophic plate of a meromictic lake. Geobiology 12, 451-468.
29. 13C-contents of sedimentary bacterial lipids in a shallow sulfidic monomictic lake (Lake Cisó, Spain). Organic Geochemistry 31, 777-786.
30. 13C contents of sedimentary organic compounds: principles and evidence. Marine Geology 113, 111-125.
31. Hayes JM (2001) Fractionation of carbon and hydrogen isotopes in biosynthetic processes. Reviews in Mineralogy and Geochemistry 43, 225-277.
32. Hays LE, Beatty T, Henderson CM, Love GD, Summons RE (2007) Evidence for photic zone euxinia through the end-Permian mass extinction in the Panthalassic Ocean (Peace River Basin, Western Canada). Palaeoworld 16, 39-50.
33. Huang W-Y, Meinschein WG (1979) Sterols as ecological indicators. Geochimica et Cosmochimica Acta 43, 739-745.
34. Huguet C, Urakawa H, Martens-Habbena W, Truxal L, Stahl DA, Ingalls AE (2010) Changes in intact membrane lipid content of archaeal cells as an indication of metabolic status. Organic Geochemistry 41, 930-934.
35. Imhoff J, Bias-Imhoff U (1995) Lipids, quinones and fatty acids of anoxygenic phototrophic bacteria. In Anoxygenic Photosynthetic Bacteria. (eds Blankenship R, Madigan M, Bauer C). Springer, Dordrecht, pp. 179-205.
36. Inthorn M, Wagner T, Scheeder G, Zabel M (2006) Lateral transport controls distribution, quality, and burial of organic matter along continental slopes in high-productivity areas. Geology 34, 205-208.
37. Johnston DT, Poulton SW, Dehler C, Porter S, Husson J, Canfield DE, Knoll AH (2010) An emerging picture of Neoproterozoic ocean chemistry: Insights from the Chuar Group, Grand Canyon, USA. Earth and Planetary Science Letters 290, 64-73.
38. Kaneda T (1991) Iso- and anteiso-fatty acids in bacteria: biosynthesis, function, and taxonomic significance. Microbiological Reviews 55, 288-302.
39. Kempema EW, Reimnitz E, Barnes PW (2001) Anchor-ice formation and ice rafting in Southwestern Lake Michigan, U.S.A. Journal of Sedimentary Research 71, 346-354.
40. Klepac-Ceraj V, Hayes CA, Gilhooly WP, Lyons TW, Kolter R, Pearson A (2012) Microbial diversity under extreme euxinia: Mahoney Lake, Canada. Geobiology 10, 223-235.
41. Knoll AH, Bambach RK, Payne JL, Pruss S, Fischer WW (2007) Paleophysiology and end-Permian mass extinction. Earth and Planetary Science Letters 256, 295-313.
42. Li C, Sessions AL, Kinnaman FS, Valentine DL (2009) Hydrogen-isotopic variability in lipids from Santa Barbara Basin sediments. Geochimica et Cosmochimica Acta 73, 4803-4823.
43. Logan GA, Hayes JM, Hieshima GB, Summons RE (1995) Terminal Proterozoic reorganization of biogeochemical cycles. Nature 376, 53-56.
44. Lowe DJ, Green JD, Northcote TG, Hall KJ (1997) Holocene fluctuations of a meromictic lake in southern British Columbia. Quaternary Research 48, 100-113.
45. Ludlam SD (1974) Fayetteville Green Lake, New York. 6. The role of turbidity currents in lake sedimentation. Limnology and Oceanography 19, 656-664.
46. Lyons TW, Reinhard CT (2009) An early productive ocean unfit for aerobics. Proceedings of the National Academy of Sciences of the USA 106, 18045-18046.
47. MacIntyre S, Alldredge AL, Gottschalk CC (1995) Accumulation of marine snow at density discontinuities in the water column. Limnology and Oceanography 40, 449-468.
48. Madigan MT, Takigiku R, Lee RG, Gest H, Hayes JM (1989) Carbon isotope fractionation by thermophilic phototrophic sulfur bacteria: evidence for autotrophic growth in natural populations. Applied and Environmental Microbiology 55, 639-644.
49. Meyer KM, Kump LR (2008) Oceanic euxinia in Earth history: causes and consequences. Annual Review of Earth and Planetary Sciences 36, 251-288.
50. Meyer KM, Macalady JL, Fulton JM, Kump LR, Schaperdoth I, Freeman KH (2011) Carotenoid biomarkers as an imperfect reflection of the anoxygenic phototrophic community in meromictic Fayetteville Green Lake. Geobiology 9, 321-329.
51. Mollenhauer G, Eglinton TI (2007) Diagenetic and sedimentological controls on the composition of organic matter preserved in California Borderland Basin sediments. Limnology and Oceanography 52, 558-576.
52. Mudge SM, Norris CE (1997) Lipid biomarkers in the Conwy Estuary (North Wales, U.K.): a comparison between fatty alcohols and sterols. Marine Chemistry 57, 61-84.
53. Naraoka H, Ishiwatari R (2000) Molecular and isotopic abundances of long-chain n-fatty acids in open marine sediments of the western North Pacific. Chemical Geology 165, 23-36.
54. Nishihara M, Koga Y (1987) Extraction and composition of polar lipids from the Archaebacterium, Methanobacterium thermoautotrophicum: effective extraction of tetraether lipids by an acidified solvent. Journal of Biochemistry 101, 997-1005.
55. Northcote TG, Hall KJ (1983) Limnological contrasts and anomalies in two adjacent saline lakes. Hydrobiologia 105, 179-194.
56. Northcote TG, Halsey TG (1969) Seasonal changes in the limnology of some meromictic lakes in southern British Columbia. Journal of the Fisheries Research Board of Canada 26, 1763-1787.
57. Otte S, Kuenen JG, Nielsen LP, Paerl HW, Zopfi J, Schulz HN, Teske A, Strotmann B, Gallardo VA, Jørgensen BB (1999) Nitrogen, carbon, and sulfur metabolism in natural Thioploca samples. Applied and Environmental Microbiology 65, 3148-3157.
58. Overmann J (1997) Mahoney Lake: a case study of the ecological significance of phototrophic sulfur bacteria. In Advances in microbial ecology 15. (ed Jones JG). Springer Science, New York, pp. 251-284.
59. Overmann J, Beatty JT, Hall KJ, Pfennig N, Northcote TG (1991) Characterization of a dense, purple sulfur bacterial layer in a meromictic salt lake. Limnology and Oceanography 36, 846-859.
60. Overmann J, Fischer U, Pfennig N (1992) A new purple sulfur bacterium from saline littoral sediments, Thiorhodovibrio winogradskyi gen. nov. and sp. nov. Archives of Microbiology 157, 329-335.
61. Overmann Sandmann G, Hall KJ, Northcote TG (1993) Fossil carotenoids and paleolimnology of meromictic Mahoney Lake, British Columbia, Canada. Aquatic Sciences 55, 31-39.
62. Overmann J, Thomas Beatty J, Hall KJ (1994) Photosynthetic activity and population dynamics of Amoebobacter purpureus in a meromictic saline lake. FEMS Microbiology Ecology 15, 309-319.
63. Overmann J, Beatty JT, Krouse HR, Hall KJ (1996a) The sulfur cycle in the chemocline of a meromictic salt lake. Limnology and oceanography 41, 147-156.
64. Overmann J, Beatty JT, Hall KJ (1996b) Purple sulfur bacteria control the growth of aerobic heterotrophic bacterioplankton in a meromictic salt lake. Applied and Environmental Microbiology 62, 3251-3258.
65. Ozaki K, Tajika E (2013) Biogeochemical effects of atmospheric oxygen concentration, phosphorous weathering, and sea-level stand on oceanic redox chemistry: implications for greenhouse climates. Earth and Planetary Science Letters 373, 129-139.
66. Parkes RJ, Taylor J (1983) The relationship between fatty acid distributions and bacterial respiratory types in contemporary marine sediments. Estuarine, Coastal and Shelf Science 16, 173-174.
67. 14C analysis. Geochimica et Cosmochimica Acta 65, 3123-3137.
68. Perry GJ, Volkman JK, Johns RB, Bavor HJ Jr (1979) Fatty acids of bacterial origin in contemporary marine sediments. Geochimica et Cosmochimica Acta 43, 1715-1725.
69. Planavsky NJ, McGoldrick P, Scott CT, Li C, Reinhard CT, Kelly AE, Chu X, Bekker A, Love GD, Lyons TW (2011) Widespread iron-rich conditions in the mid-Proterozoic ocean. Nature 477, 448-451.
70. Rao Z, Zhu Z, Jia G, Henderson ACG, Xue Q, Wang S (2009) Compound specific δD values of long chain n-alkanes derived from terrestrial higher plants are indicative of the δD of meteoric waters: evidence from surface soils in eastern China. Organic Geochemistry 40, 922-930.
71. Romero-Viana L, Keely BJ, Camacho A, Vicente E, Rosa Miracle M (2009) Photoautotrophic community changes in Lagunillo del Tejo (Spain) in response to lake level fluctuation: two centuries of sedimentary pigment records. Organic Geochemistry 40, 376-386.
72. Schouten S, Klein Breteler WCM, Blokker P, Schogt N, Rijpstra WIC, Grice K, Baas M, Damsté JSS (1998) Biosynthetic effects on the stable carbon isotopic compositions of algal lipids: Implications for deciphering the carbon isotopic biomarker record. Geochimica et Cosmochimica Acta 62, 1397-1406.
73. Schubotz F, Wakeham SG, Lipp JS, Fredricks HF, Hinrichs K-U (2009) Detection of microbial biomass by intact polar membrane lipid analysis in the water column and surface sediments of the Black Sea. Environmental Microbiology 11, 2720-2734.
74. Scott KM, Henn-Sax M, Harmer TL, Longo DL, Frame CH, Cavanaugh CM (2007) Kinetic isotope effect and bio-chemical characterization of form IA RubisCO from the marine cyanobacterium Prochlorococcus marinus MIT9313. Limnology and Oceanography 52, 2199.
75. Shulse CN, Allen EE (2011) Diversity and distribution of microbial long-chain fatty acid biosynthetic genes in the marine environment. Environmental Microbiology 13, 684-695.
76. 2 fixation in bacterial photosynthesis studied by the carbon isotope fractionation technique. Archives of Microbiology 112, 35-38.
77. Sorokin II (2002) The Black Sea: Ecology and Oceanography. Backhuys Publishers, Leiden.
78. Stein SE (1999) An integrated method for spectrum extraction and compound identification from gas chromatography/mass spectrometry data. Journal of the American Society for Mass Spectrometry 10, 770-781.
79. Summons RE, Bird LR, Gillespie AL, Pruss SB, Roberts M, Sessions AL (2013) Lipid biomarkers in ooids from different locations and ages: evidence for a common bacterial flora. Geobiology 11, 420-436.
80. Tank M, Thiel V, Imhoff JF (2009) Phylogenetic relationship of phototrophic purple sulfur bacteria according to pufL and pufM genes. International Microbiology 12, 175-185.
81. Taylor J, Parkes RJ (1983) The cellular fatty acids of the sulphate-reducing bacteria, Desulfobacter sp., Desulfobulbus sp. and Desulfovibrio desulfuricans. Journal of General Microbiology 129, 3303-3309.
82. Velinsky DJ, Fogel ML (1999) Cycling of dissolved and particulate nitrogen and carbon in the Framvaren Fjord, Norway: stable isotopic variations. Marine Chemistry 67, 161-180.
83. Volkman J (2003) Sterols in microorganisms. Applied Microbiology and Biotechnology 60, 495-506.
84. Volkman JK, Burton HR, Everitt DA, Allen DI (1988) Pigment and lipid compositions of algal and bacterial communities in Ace Lake, Vestfold Hills, Antarctica. Hydrobiologia 165, 41-57.
85. 2: community genomics and function reveal metabolic versatility and extremely low diversity in a Great Lakes sinkhole mat. Geobiology 10, 250-267.
86. Wakeham SG (1982) Organic matter from a sediment trap experiment in the equatorial north Atlantic: wax esters, steryl esters, triacylglycerols and alkyldiacylglycerols. Geochimica et Cosmochimica Acta 46, 2239-2257.