Mechanisms of tomato mosaic virus RNA replication and its inhibition by the host resistance factor Tm-1

Current Opinion in Virology

Volumn 9, Issue , 2014, Pages 8-13

  Ishibashi, Kazuhiro ^a   Ishikawa, Masayuki ^a  

^a NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC RNA; HOST RESISTANCE FACTOR TM 1; RNA POLYMERASE; UNCLASSIFIED DRUG; VIRUS RNA; ANTIVIRUS AGENT; RNA DIRECTED RNA POLYMERASE; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CELL DISRUPTION; COMPLEX FORMATION; CYTOPLASM; HOST CELL; HOST RESISTANCE; IN VITRO STUDY; INTRACELLULAR MEMBRANE; MEMBRANE BINDING; MOSAIC VIRUS; NONHUMAN; PLANT IMMUNITY; PROTEIN BINDING; PROTEIN SYNTHESIS; RIBOSOME; RIBOSOME SUBUNIT; RNA REPLICATION; RNA SYNTHESIS; RNA TRANSLATION; RNA VIRUS; SOLUBILIZATION; TOBACCO MOSAIC VIRUS; TOBAMOVIRUS; VIRUS GENE; VIRUS INHIBITION; VIRUS REPLICATION; ANTAGONISTS AND INHIBITORS; BIOSYNTHESIS; IMMUNOLOGY; METABOLISM; PHYSIOLOGY; PROTEIN MULTIMERIZATION; TOMATO; VIROLOGY;

ANTIVIRAL AGENTS; LYCOPERSICON ESCULENTUM; PLANT PROTEINS; PROTEIN MULTIMERIZATION; RNA REPLICASE; RNA, VIRAL; TOBAMOVIRUS; VIRUS REPLICATION;

EID: 84907925122     PISSN: 18796257     EISSN: 18796265     Source Type: Journal    
DOI: 10.1016/j.coviro.2014.08.005     Document Type: Review

References (59)

1. W.S. Porte, S.P. Doolittle, and F.L. Wellman Hybridization of a mosaic-tolerant, wilt-resistant Lycopersicon hirsutum with Lycopersicon esculentum Phytopathology 29 1939 757 759
2. J. Pelham Resistance in tomato to tobacco mosaic virus Euphytica 15 1966 258 267
3. H. Levesque, F. Vedel, C. Mathieu, and A.G.L. Courcel Identification of a short rDNA spacer sequence highly specific of a tomato line containing Tm-1 gene introgressed from Lycopersicon hirsutum Theor Appl Genet 80 1990 602 608
4. S.D. Tanksley, M.W. Ganal, J.P. Prince, M.C. de Vicente, M.W. Bonierbale, P. Broun, T.M. Fulton, J.J. Giovannoni, S. Grandillo, and G.B. Martin High density molecular linkage maps of the tomato and potato genomes Genetics 132 1992 1141 1160
5. T. Ohmori, M. Murata, and F. Motoyoshi Molecular characterization of RAPD and SCAR markers linked to the Tm-1 locus in tomato Theor Appl Genet 92 1996 151 156
6. F. Motoyoshi, and N. Oshima Expression of genetically controlled resistance to tobacco mosaic virus infection in isolated tomato leaf mesophyll protoplasts J Gen Virol 34 1977 499 506
7. T. Meshi, F. Motoyoshi, A. Adachi, Y. Watanabe, N. Takamatsu, and Y. Okada Two concomitant base substitutions in the putative replicase genes of tobacco mosaic virus confer the ability to overcome the effects of a tomato resistance gene, Tm-1 EMBO J 7 1988 1575 1581
8. M. Strasser, and A.J.P. Pfitzner The double-resistance-breaking Tomato mosaic virus strain ToMV1-2 contains two independent single resistance-breaking domains Arch Virol 152 2007 903 914
9. R. Yamafuji, Y. Watanabe, T. Meshi, and Y. Okada Replication of TMV-L and Lta1 RNAs and their recombinants in TMV-resistant Tm-1 tomato protoplasts Virology 183 1991 99 105
10. Y. Watanabe, N. Kishibayashi, F. Motoyoshi, and Y. Okada Characterization of Tm-1 gene action on replication of common isolates and a resistance-breaking isolate of TMV Virology 161 1987 527 532
11. K. Komoda, S. Naito, and M. Ishikawa Replication of plant RNA virus genomes in a cell-free extract of evacuolated plant protoplasts Proc Natl Acad Sci U S A 101 2004 1863 1867
12. A. Molla, A.V. Paul, and E. Wimmer Cell-free, de novo synthesis of poliovirus Science 254 1991 1647 1651
13. H.-o. Iwakawa, M. Kaido, K. Mise, and T. Okuno cis-Acting core RNA elements required for negative-strand RNA synthesis and cap-independent translation are separated in the 3′-untranslated region of Red clover necrotic mosaic virus RNA1 Virology 369 2007 168 181
14. T. Gursinsky, B. Schulz, and S.-E. Behrens Replication of Tomato bushy stunt virus RNA in a plant in vitro system Virology 390 2009 250 260
15. H. Mizumoto, H.-o. Iwakawa, M. Kaido, K. Mise, and T. Okuno Cap-independent translation mechanism of Red Clover Necrotic Mosaic Virus RNA2 differs from that of RNA1 and is linked to rna replication J Virol 80 2006 3781 3791
16. Y. Tajima, H.-o. Iwakawa, M. Kaido, K. Mise, and T. Okuno A long-distance RNA-RNA interaction plays an important role in programmed -1 ribosomal frameshifting in the translation of p88 replicase protein of Red clover necrotic mosaic virus Virology 417 2011 169 178
17. H.-o. Iwakawa, Y. Tajima, T. Taniguchi, M. Kaido, K. Mise, Y. Tomari, H. Taniguchi, and T. Okuno Poly(A)-binding protein facilitates translation of an uncapped/nonpolyadenylated viral RNA by binding to the 3′ untranslated region J Virol 86 2012 7836 7849
18. J.J. Kraft, K. Treder, M.S. Peterson, and W.A. Miller Cation-dependent folding of 3′ cap-independent translation elements facilitates interaction of a 17-nucleotide conserved sequence with eIF4G Nucleic Acids Res 41 2013 3398 3413
19. K. Komoda, N. Mawatari, Y. Hagiwara-Komoda, S. Naito, and M. Ishikawa Identification of a ribonucleoprotein intermediate of tomato mosaic virus RNA replication complex formation J Virol 81 2007 2584 2591
20. M. An, H.-o. Iwakawa, A. Mine, M. Kaido, K. Mise, and T. Okuno A Y-shaped RNA structure in the 3′ untranslated region together with the trans-activator and core promoter of Red clover necrotic mosaic virus RNA2 is required for its negative-strand RNA synthesis Virology 405 2010 100 109
21. H.-o. Iwakawa, A. Mine, K. Hyodo, M. An, M. Kaido, K. Mise, and T. Okuno Template recognition mechanisms by replicase proteins differ between bipartite positive-strand genomic RNAs of a plant virus J Virol 85 2011 497 509
22. K. Kawamura-Nagaya, K. Ishibashi, Y.-P. Huang, S. Miyashita, and M. Ishikawa Replication protein of tobacco mosaic virus cotranslationally binds the 5′ untranslated region of genomic RNA to enable viral replication Proc Natl Acad Sci U S A 111 2014 E1620 E1628
23. T. Iki, M. Yoshikawa, M. Nishikiori, M. Jaudal, E. Matsumoto-Yokoyama, I. Mitsuhara, T. Meshi, and M. Ishikawa In vitro assembly of plant RNA-induced silencing complexes facilitated by molecular chaperone HSP90 Mol Cell 39 2010 282 291
24. R. Ye, W. Wang, T. Iki, C. Liu, Y. Wu, M. Ishikawa, X. Zhou, and Y. Qi Cytoplasmic assembly and selective nuclear import of Arabidopsis ARGONAUTE4/siRNA complexes Mol Cell 46 2012 859 870
25. J. Schuck, T. Gursinsky, V. Pantaleo, J. Burgyán, and S.-E. Behrens AGO/RISC-mediated antiviral RNA silencing in a plant in vitro system Nucleic Acids Res 41 2013 5090 5103
26. M. Yoshikawa, T. Iki, Y. Tsutsui, K. Miyashita, R.S. Poethig, Y. Habu, and M. Ishikawa 3′ fragment of miR173-programmed RISC-cleaved RNA is protected from degradation in a complex with RISC and SGS3 Proc Natl Acad Sci U S A 110 2013 4117 4122
27. Y. Endo, Iwakawa Ho, and Y. Tomari Arabidopsis ARGONAUTE7 selects miR390 through multiple checkpoints during RISC assembly EMBO Rep 14 2013 652 658
28. H.-o. Iwakawa, and Y. Tomari Molecular insights into microRNA-mediated translational repression in plants Mol Cell 52 2013 591 601
29. J. Keith, and H. Fraenkel-Conrat Tobacco mosaic virus RNA carries 5′-terminal triphosphorylated guanosine blocked by 5′-linked 7-methylguanosine FEBS Lett 57 1975 31 33
30. D. Zimmern The 5′ end group of tobacco mosaic virus RNA is m7G5′ppp5′Gp Nucleic Acids Res 2 1975 1189 1202
31. S. Mandeles Location of unique sequences in tobacco mosaic virus ribonucleic acid J Biol Chem 243 1968 3671 3674
32. D.R. Gallie, D.E. Sleat, J.W. Watts, P.C. Turner, and T.M.A. Wilson The 5′-leader sequence of tobacco mosaic virus RNA enhances the expression of foreign gene transcripts in vitro and in vivo Nucleic Acids Res 15 1987 3257 3273
33. D.E. Sleat, D.R. Gallic, R.A. Jefferson, M.W. Bevan, P.C. Turner, and T.M.A. Wilson Characterisation of the 5′-leader sequence of tobacco mosaic virus RNA as a general enhancer of translation in vitro Gene 60 1987 217 225
34. D.J. Lewandowski, and W.O. Dawson Functions of the 126- and 183-kDa proteins of tobacco mosaic virus Virology 271 2000 90 98
35. T. Yamanaka, T. Ohta, M. Takahashi, T. Meshi, R. Schmidt, C. Dean, S. Naito, and M. Ishikawa TOM1, an Arabidopsis gene required for efficient multiplication of a tobamovirus, encodes a putative transmembrane protein Proc Natl Acad Sci U S A 97 2000 10107 10112
36. K. Fujisaki, G.B. Ravelo, S. Naito, and M. Ishikawa Involvement of THH1, an Arabidopsis thaliana homologue of the TOM1 gene, in tobamovirus multiplication J Gen Virol 87 2006 2397 2401
37. M. Ishikawa, S. Naito, and T. Ohno Effects of the tom1 mutation of Arabidopsis thaliana on the multiplication of tobacco mosaic virus RNA in protoplasts J Virol 67 1993 5328 5338
38. M. Ishikawa, F. Obata, T. Kumagai, and T. Ohno Isolation of mutants of Arabidopsis thaliana in which accumulation of tobacco mosaic virus coat protein is reduced to low levels Mol Gen Genet 230 1991 33 38
39. M. Nishikiori, K. Dohi, M. Mori, T. Meshi, S. Naito, and M. Ishikawa Membrane-bound tomato mosaic virus replication proteins participate in RNA synthesis and are associated with host proteins in a pattern distinct from those that are not membrane bound J Virol 80 2006 8459 8468
40. M. Nishikiori, M. Mori, K. Dohi, H. Okamura, E. Katoh, S. Naito, T. Meshi, and M. Ishikawa A host small GTP-binding protein ARL8 plays crucial roles in tobamovirus RNA replication PLoS Pathog 7 2011 e1002409
41. M. Nishikiori, T. Meshi, and M. Ishikawa Guanylylation-competent replication proteins of Tomato mosaic virus are disulfide-linked Virology 434 2012 118 128
42. M. Nishikiori, S. Sugiyama, H. Xiang, M. Niiyama, K. Ishibashi, T. Inoue, M. Ishikawa, H. Matsumura, and E. Katoh Crystal structure of the superfamily 1 Helicase from Tomato Mosaic Virus J Virol 86 2012 7565 7576
43. K. Ishibashi, S. Miyashita, E. Katoh, and M. Ishikawa Host membrane proteins involved in the replication of tobamovirus RNA Curr Opin Virol 2 2012 693 698
44. J.A. den Boon, and P. Ahlquist Organelle-like membrane compartmentalization of positive-strand RNA virus replication factories Annu Rev Microbiol 64 2010 241 256
45. J.A. den Boon, A. Diaz, and P. Ahlquist Cytoplasmic viral replication complexes Cell Host Microbe 8 2010 77 85
46. J.-F. Laliberté, and H. Sanfaçon Cellular remodeling during plant virus infection Annu Rev Phytopathol 48 2010 69 91
47. D. Paul, and R. Bartenschlager Architecture and biogenesis of plus-strand RNA virus replication factories World J Virol 2 2013 32 48
48. M. Schwartz, J. Chen, M. Janda, M. Sullivan, J. den Boon, and P. Ahlquist A positive-strand RNA virus replication complex parallels form and function of retrovirus capsids Mol Cell 9 2002 505 514
49. K. Ishibashi, K. Masuda, S. Naito, T. Meshi, and M. Ishikawa An inhibitor of viral RNA replication is encoded by a plant resistance gene Proc Natl Acad Sci U S A 104 2007 13833 13838
50. M. Kato, K. Ishibashi, C. Kobayashi, M. Ishikawa, and E. Katoh Expression, purification, and functional characterization of an N-terminal fragment of the tomato mosaic virus resistance protein Tm-1 Protein Expres Purif 89 2013 1 6
51. K. Ishibashi, Y. Kezuka, C. Kobayashi, M. Kato, T. Inoue, T. Nonaka, M. Ishikawa, H. Matsumura, and E. Katoh Structural basis for the recognition-evasion arms race between Tomato mosaic virus and the resistance gene Tm-1 Proc Natl Acad Sci U S A 111 2014 E3486 E3495
52. K. Ishibashi, N. Mawatari, S. Miyashita, H. Kishino, T. Meshi, and M. Ishikawa Coevolution and hierarchical interactions of Tomato mosaic virus and the resistance gene Tm-1 PLoS Pathog 8 2012 e1002975
53. K. Ishibashi, and M. Ishikawa The resistance protein Tm-1 inhibits formation of a tomato mosaic virus replication protein-host membrane protein complex J Virol 87 2013 7933 7939
54. J. Pelham, J.T. Fletcher, and J.H. Hawkins The establishment of a new strain of tobacco mosaic virus resulting from the use of resistant varieties of tomato Ann Appl Biol 65 1970 293 297
55. R.S.S. Fraser, and S.A.R. Loughlin Resistance to tobacco mosaic virus in tomato: effects of the Tm-1 gene on virus multiplication J Gen Virol 48 1980 87 96
56. Y. Yamaji, K. Maejima, K. Komatsu, T. Shiraishi, Y. Okano, M. Himeno, K. Sugawara, Y. Neriya, N. Minato, and C. Miura Lectin-mediated resistance impairs plant virus infection at the cellular level Plant Cell 24 2012 778 793
57. K. Sugawara, T. Shiraishi, T. Yoshida, N. Fujita, O. Netsu, Y. Yamaji, and S. Namba A replicase of Potato virus X acts as the resistance-breaking determinant for JAX1-mediated resistance Mol Plant-Microbe Interact 26 2013 1106 1112
58. A. Mehle, and J. Doudna An inhibitory activity in human cells restricts the function of an Avian-like influenza virus polymerase Cell Host Microbe 4 2008 111 122
59. O. Moncorgé, M. Mura, and W.S. Barclay Evidence for avian and human host cell factors that affect the activity of influenza virus polymerase J Virol 84 2010 9978 9986