Characterisation of NO production and consumption: New insights by an improved laboratory dynamic chamber technique

Biogeosciences

Volumn 11, Issue 19, 2014, Pages 5463-5492

  Behrendt, T ^a   Veres, P R ^b   Ashuri, F ^a   Song, G ^a,c   Flanz, M ^a   Mamtimin, B ^a   Bruse, M ^d   Williams, J ^a   Meixner, F X ^a  

^a MAX PLANCK INSTITUTE FOR CHEMISTRY   (Germany)

^b Cooperative Institute for Research in Environmental Sciences ^*  (United States)

^c INSTITUTE OF APPLIED ECOLOGY   (China)

^d JOHANNES GUTENBERG UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BIOGENIC EMISSION; LABORATORY METHOD; MIXING RATIO; NITRIC OXIDE; SOIL EMISSION; SOIL MOISTURE; SOIL TEMPERATURE; VOLATILE ORGANIC COMPOUND;

EID: 84907923923     PISSN: 17264170     EISSN: 17264189     Source Type: Journal    
DOI: 10.5194/bg-11-5463-2014     Document Type: Article

References (76)

1. Asensio, D., Penuelas, I. F., and Llusia, J.: On-line screening of soil VOCs exchange responses to moisture, temperature and root presence, Plant Soil, 291, 249-261, 2007.
2. Ashuri, F. A.: Der Austausch von Stickstoffmonoxid zwischen Boden und Atmosphäre unter besonderer Berücksichtigung des Bodenwassergehaltes, Einfluss kulturlandschaftlicher Verhältnisse auf den Umsatz eines Spurengases, PhD thesis, Johannes Gutenberg University Mainz, Germany, 1-169, 2009.
3. Bargsten, A., Falge, E., Pritsch, K., Huwe, B., and Meixner, F. X.: Laboratory measurements of nitric oxide release from forest soil with a thick organic layer under different understory types, Biogeosciences, 7, 1425-1441, doi:10.5194/bg-7-1425-2010, 2010.
4. Betlach, M. R. and Tiedje, J. M.: Kinetic Explanation for Accumulation of Nitrite, Nitric Oxide, and Nitrous Oxide During Bacterial Denitrification, Appl. Environ. Microbiol., 42, 1074-1084, 1981.
5. 2OProducing Microbial Communities in Soils -What Matters for Their Functioning?, Adv. Appl. Microbiol., 75, 33-70, 2011.
6. Bronstein, I. N. and Semendjajew, K. A.: Taschenbuch der Mathematik, Empirische Formeln und Interpolation, 515-527. BSB B. G. Teubner Verlagsgesellschaft Leipzig, 1970.
7. Chameides, W. L., Fehsenfeld, F., Rodgers, M. O., Cardelino, C., Martinez, J., Parrish, D., Lonneman, W., Lawson, R., Rasmussen, R. A., Zimmerman, P., Greenberg, J., Middleton, P., and Wang, T.: Ozone Precursor Relationships in the Ambient Atmosphere, J. Geophys. Res., 97, 6037-6055, 1992.
8. Conrad, R.: Compensation concentration as critical variable for regulating the flux of trace gases between soil and atmosphere, Biogeochemistry, 27, 155-170, 1994.
9. 2O and NO), Microbiol. Rev., 60, 4, 609-640, 1996.
10. Crutzen, P. J., Lawrence, M., and Pöschl, U.: On the background photochemistry of tropospheric ozone, Tellus A-B, 51, 123-146, 1999.
11. Denman, K. L., Brasseur, G., Chidthaisong, A., Ciais, P., Cox, P. M., Dickinson, R. E., Hauglustaine, D. Heinze, C., Holland, E., Jacob, D., Lohmann, U., Ramachandran, S., da Silva Dias, P. L., Wofsy, S. C., and Zhang, X.: Couplings Between Changes in the Climate System and Biogeochemistry, in: Climate Change 2007: The Physical Science Basis, Contribution to Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change, 499-587, 2007.
12. Dunfield P. F. and Knowles, R.: Organic matter, heterotrophic activity, and NO consumption in soils, Glob. Change Biol., 4, 199-207, 1998.
13. Falk, S., Liu, B., and Braker, G.: Isolation, genetic and functional characterization of novel soil nirK-type denitrifiers, Syst. Appl. Microbiol., 33, 337-347, 2010.
14. Feig, G. T.: Soil Biogenic Emissions of Nitric Oxide from Arid and Semi-Arid Ecosystems, PhD thesis, Johannes Gutenberg University Mainz, Germany, 1-222, 2009.
15. Feig, G. T., Mamtimin, B., and Meixner, F. X.: Soil biogenic emissions of nitric oxide from a semi-arid savanna in South Africa, Biogeosciences, 5, 1723-1738, doi:10.5194/bg-5-1723- 2008, 2008a.
16. Feig, G. T., Mamtimin, B., and Meixner, F. X.: Use of laboratory and remote sensing techniques to estimate vegetation patch scale emissions of nitric oxide from an arid Kalahari savanna, Biogeosciences Discuss., 5, 4621-4680, doi:10.5194/bgd-5-4621-2008, 2008b.
17. Foken, T., Meixner, F. X., Falge, E., Zetzsch, C., Serafimovich, A., Bargsten, A., Behrendt, T., Biermann, T., Breuninger, C., Dix, S., Gerken, T., Hunner, M., Lehmann-Pape, L., Hens, K., Jocher, G., Kesselmeier, J., Lüers, J., Mayer, J.-C., Moravek, A., Plake, D., Riederer, M., Rütz, F., Scheibe, M., Siebicke, L., Sörgel, M., Staudt, K., Trebs, I., Tsokankunku, A., Welling, M., Wolff, V., and Zhu, Z.: Coupling processes and exchange of energy and reactive and non-reactive trace gases at a forest site -results of the EGER experiment, Atmos. Chem. Phys., 12, 1923-1950, doi:10.5194/acp-12-1923-2012, 2012.
18. 2O and NO emissions by agricultural soils with low hydraulic potentials, Soil Biol. Biochem., 34, 559-575, 2002.
19. Galbally, I. E. and Johansson, C.: A model relating laboratory measurements of rates of nitric oxide production and field measurements of nitric oxide emission from soils, J. Geophys. Res., 94, 6473-6480, 1989.
20. Galbally, I. E. and Roy, C. R.: Loss of fixed nitrogen from soil by nitric oxide exhalation, Nature, 275, 734-735, 1978.
21. Gelfand, I., Feig, G., Meixner, F. X., and Yakir, D.: Afforestation of semi-arid shrubland reduces biogenic NO emission from soil, Soil Biol. Biochem., 41, 1561-1570, 2009.
22. Gödde, M. and Conrad, R.: Simultaneous Measurement of Nitric Oxide Production and Consumption in Soil Using a Simple Static Incubation System, and the Effect of Soil Water Content on the Contribution of Nitrification, Soil Biol. Biochem., 30, 439-442, 1998.
23. Gödde, M. and Conrad, R.: Immediate and adaptational temperature effects on nitric oxide production and nitrous oxide release from nitrification and denitrification in two soils, Biol. Fertil. Soils, 30, 33-40, 1999.
24. Gödde, M. and Conrad, R.: Influence of soil properties on the turnover of nitric oxide and nitrous oxide by nitrification and denitrification at constant temperature and moisture, Biol. Fertil. Soils, 32, 120-128, 2000.
25. Grauss, M., Müller, M., and Hansel, A.: High resolution PTR-TOF: quantification and formula confirmation of VOC in real time, J. Am. Soc. Mass Sp., 21, 1037-1044, 2010.
26. Gubry-Rangin, C., Nicol, G. W., and Prosser, J. I.: Archaea rather than bacteria control nitrification in two agricultural acidic soils, FEMS Microbiol. Ecol., 74, 566-574, 2010.
27. Gut, A., Blatter, A., Farni, M., Lehmann, B. E., Neftel, A., and Staffelbach, T.: A new membrane tube technique (METT) for continuous gas measurements in soils, Plant Soil, 198, 79-88, 1998.
28. 2 evolution, moisture content and temperature for a range of soil types, Soil Biol. Biochem., 25, 1537-1546, 1993.
29. Insam, H. and Seewald, M. S. A.: Volatile organic compounds (VOCs) in soils, Biol. Fertil. Soils, 46, 199-213, 2010.
30. Jones, D. T. and Woods, D. R.: Acetone-Butanol Fermentation Revisited. Microbiological Reviews, 50, 484-524, 1986.
31. Kanner, D. and Bartha, R.: Metabolism of acetylene by Nocardia rhodochros, J. Bacteriol., 150, 989-992, 1982.
32. Kirkman, G. A., Yang, W. X., and Meixner, F. X.: Biogenic nitric oxide emissions upscaling: An approach for Zimbabwe, Global Biogeochem. Cy., 15, 1005-1020, 2001.
33. Koper, T. E., Stark, J. M., Habteselassie, M. Y., and Norton, J. M.: Nitrification exhibits Haldane kinetics in an agricultural soil treated with ammonium sulfate or dairy-waste compost, FEMS Microbiol. Ecol., 74, 316-322, 2010.
34. Kumon, Y., Sasaki, Y., Kato, I., Takaya, N., Shoun, H., and Beppu, T.: Codenitrification and Denitrification are dual metabolic Pathways through which dinitrogen evolves from nitrate in Streptomyces antibioticus, J. Bacteriol., 184, 2963-2968, 2002.
35. Laville, P., Flura, D., Gabrielle, B., Loubet, B., Fanucci, O., Rolland, M.-N., and Cellier, P.: Characterisation of soil emissions of nitric oxide at field and laboratory scale using high resolution method, Atmos. Environ., 43, 2648-2658, 2009.
36. Lindinger, W., Hansel, A., and Jordan, A.: Proton-transfer-reaction mass spectrometry (PTR-MS): On-line monitoring of volatile organic compounds at pptv levels, Chem. Soc. Rev., 27, 347-354, 1998.
37. Ludwig, J., Meixner, F. X., Vogel, B., and Forstner, J.: Soil-air exchange of nitric oxide: An overview of processes, environmental factors, and modelling studies, Biogeochemistry, 52, 225-257, 2001.
38. MacDougall, D. and Crummett, W. B.: Guidelines for Data Acquisition and Data Quality Evaluation in environmental chemistry, Anal. Chem., 52, 2242-2249, doi:10.1021/ac50064a004, 1980.
39. Mayer, J. C., Bargsten, A., Rummel, U., Meixner, F. X., and Foken, T.: Distributed Modified Bowen Ratio method for surface layer fluxes of reactive and non-reactive trace gases, Agr. Forest Meteorol., 151, 655-668, 2011.
40. Meixner, F. X. and Yang, W. X.: Biogenic emissions of nitric oxide and nitrous oxide from arid and semiarid land, in: Dryland Ecohydrology, 233-255, Springer, Netherlands, 2006.
41. Müller, M., Graus, M., Ruuskanen, T. M., Schnitzhofer, R., Bamberger, I., Kaser, L., Titzmann, T., Hörtnagl, L., Wohlfahrt, G., Karl, T., and Hansel, A.: First eddy covariance flux measurements by PTR-TOF, Atmos. Meas. Tech., 3, 387-395, doi:10.5194/amt-3-387-2010, 2010.
42. Müller, M., George, C., and D'Anna, B.: Enhanced Spectral Analysis of C-TOF Aerosol Mass Spectrometer Data: Iterative Residual Analysis and Cumulative Peak Fitting, Int. J. Mass Spectrom., 306, 1-8, doi:10.1016/j.ijms.2011.04.007, 2011.
43. Müller, M., Mikoviny, T., Jud, W., D'Anna, B., and Wisthaler, A.: A New Software Tool for the Analysis of High Resolution PTR-TOF Mass Spectra, Chemometr. Intell. Lab., 127, 158-165, doi:10.1016/j.chemolab.2013.06.011, 2013.
44. Orlando, J., Caru, M., Pommerenke, B., and Braker, G.: Diversity and Activity of Denitrifiers of Chilean Arid Soil Ecosystems, Front. Microbiol., 3, 101, doi:10.3389/fmicb.2012.00101, 2012.
45. Otter, L. B., Yang, W. X., Scholes, M. C., and Meixner, F. X.: Nitric Oxide emissions from a southern African Savannah, J. Geophys. Res., 104, 18471-18485, 1999.
46. Pape, L., Ammann, C., Nyfeler-Brunner, A., Spirig, C., Hens, K., and Meixner, F. X.: An automated dynamic chamber system for surface exchange measurement of non-reactive and reactive trace gases of grassland ecosystems, Biogeosciences, 6, 405-429, doi:10.5194/bg-6-405-2009, 2009.
47. Pennanen, T., Fritze, H., Vanhala, P., Kiikkila, O., Neuvonen, S., and Baath, E.: Structure of a Microbial Community in Soil after Prologed Addition of Low Levels of Simulated Acid Rain, Appl. Environ. Microbiol., 64, 2173-2180, 1998.
48. Remde, A., Slemr, F., and Conrad, R.: Microbial production and uptake of nitric oxide in soil, FEMS Microbiol. Ecol., 62, 221-230, 1989.
49. Remde, A., Ludwig, J., Meixner, F. X., and Conrad, R.: A Study to Explain the Emission of Nitric Oxide from a Marsh Soil, J. Atmos. Chem., 17, 249-275, 1993.
50. Rudolph, J. and Conrad, R.: Flux between Soil and Atmosphere, Vertical Concentration Profiles in Soil, and Turnover of Nitric Oxide: 2. Experiments with Naturally Layered Soil Cores, J. Atmos. Chem., 23, 275-300, 1996.
51. Rudolph, J., Rothfuss, F., and Conrad, R.: Flux between Soil and Atmosphere, Vertical Concentration Profiles in Soil, and Turnover of Nitric Oxide: 1. Measurements on a Model Soil Core, J. Atmos. Chem., 23, 253-273, 1996.
52. Rütting, T., Boeckx, P., Müller, C., and Klemedtsson, L.: Assessment of the importance of dissimilatory nitrate reduction to ammonium for the terrestrial nitrogen cycle, Biogeosciences, 8, 1779-1791, doi:10.5194/bg-8-1779-2011, 2011.
53. Saad, O. A. L. O. and Conrad, R.: Temperature dependence of nitrification, denitrification and turnover of nitric oxide in different soils, Biol. Fert. Soils, 15, 21-27, 1993.
54. Schulz, S. and Dickschat, J. S.: Bacterial volatiles: the smell of small organisms, Nat. Prod. Rep., 24, 814-842, 2007.
55. Schuster, M. and Conrad, R.: Metabolism of nitric oxide and nitrous oxide during nitrification and denitrification in soil at different incubation conditions, FEMS Microbiol. Ecol., 101, 133-143, 1992.
56. Sillman, S.: The relation between ozone, NOx, and hydrocarbons in urban and polluted rural environments, Atmos. Environ., 33, 1821-1845, 1999.
57. Skopp, J., Jawson, M. D., and Doran, J. W.: Steady-State Aerobic Microbial Activity as a Function of Soil Water Content, Soil Sci. Soc. Am. J., 54, 1619-1625, 1990.
58. Slemr, F. and Seiler, W.: Field study of environmental variables controlling the NO emission from soil and the NO compensation point, J. Geophys. Res., 96, 13017-13031, 1991.
59. Stark, J. M., Smart, D. R., Hart, S. C., and Haubensack, K. A.: Regulation of nitric oxide emissions from forest and rangeland soils of Western North America, Ecology, 83, 2278-2292, 2002.
60. Steinkamp, J. and Lawrence, M. G.: Improvement and evaluation of simulated global biogenic soil NO emissions in an AC-GCM, Atmos. Chem. Phys., 11, 6063-6082, doi:10.5194/acp-11-6063- 2011, 2011.
61. Stotzky, G., Goos, R. D., and Timonin, M. I.: Microbial changes occurring in soil as a result of storage, Plant Soil, 16, 1-18, 1962.
62. Titzmann, T., Graus, M., Müller, M., Hansel, A., and Ostermann, A.: Improved peak analysis of signals based on counting systems: Illustrated for proton-transfer-reaction time-of-flight mass spectrometry, Int. J. Mass Spectrom., 295, 72-77, 2010.
63. Thomson, B. C., Ostle, N. J., McNamara, N. P., Whiteley, A. S., and Griffiths, R. I.: Effects of sieving, drying and rewetting upon soil bacterial community structure and respiration rates, J. Microbiol. Meth., 83, 69-73, 2010.
64. UNEP: World Atlas of Desertification, Edward Arnold, Sevenoaks, 1-182, 1997.
65. Van Cleemput, O. and Samater, A. H.: Nitrite in soils: accumulation and role in the formation of gaseous N compounds, Fertilizer Res., 45, 81-89, 1996.
66. Van Dijk, S. and Meixner, F. X.: Production and consumption of NO in forest and pasture soils from the amazon basin, Water, Air, and Pollution: Focus, 1, 119-130, 2001.
67. Van Dijk, S. M., Gut, A., Kirkman, G. A., Meixner, F. X., Andreae, M. O., and Gomes, B. M.: Biogenic NO emissions from forest and pasture soils: Relating laboratory studies to field measurements, J. Geophys. Res., 107, 8058, doi:10.1029/2001JD000358, 2002.
68. 2 Emissions from Soil with the Gas-Flow-Soil-Core Technique, Environ. Sci. Technol., 45, 6066-6072, 2011.
69. Wickland, K. P. and Neff, J. C.: Decomposition of soil organic matter from boreal black spruce forest: environmental and chemical controls, Biogeochemistry 87, 29-47, 2008.
70. 2O emissions from soil, Global Biogeochem. Cy., 6, 351-388, 1992.
71. Wishkerman, A., Gebhardt, S., McRoberts, C. W., Hamilton, J. T. G., Williams, J., and Keppler, F.: Abiotic methyl bromide formation from vegetation and its strong dependence on temperature, Environ. Sci. Tech., 42, 6837-6842, 2008.
72. Wolff, V., Trebs, I., Foken, T., and Meixner, F. X.: Exchange of reactive nitrogen compounds: concentrations and fluxes of total ammonium and total nitrate above a spruce canopy, Biogeosciences, 7, 1729-1744, doi:10.5194/bg-7-1729-2010, 2010.
73. Yang, W. X. and Meixner, F. X.: Laboratory studies on the release of nitric oxide from sub-tropical grassland soils: The effect of soil temperature and moisture, in: Gaseous Nitrogen emissions from grasslands, 67-70, Wallingford, England, 1997.
74. Yassaa, N., Wishkerman, A., Keppler, F., and Williams, J.: Fast determination of methyl chloride and methyl bromide emissions from dried plant matter and soil samples using HS-SPME and GC-MS: method and first results, Environ. Chem., 6, 311-318, doi:10.1071/EN09034, 2009.
75. Yu, J., Meixner, F. X., Sun, W., Liang, Z., Chen, Y., Mamtimin, B., Wang, G., and Sun, Z.: Biogenic nitric oxide emission from saline sodic soils in a semiarid region, northeastern China: A laboratory study, J. Geophys. Res., 113, G04005, doi:10.1029/2007JG000576, 2008.
76. Yu, J., Meixner, F. X., Sun, W., Mamtimin, B., Wang, G., Qi, X., Xia, C., and Xie, W.: Nitric oxide emissions from black soil, northeastern China: A laboratory study revealing significantly lower rates than hiterto reported, Soil Biol. Biochem., 42, 1784-1792, 2010.