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Volumn 9, Issue 9, 2014, Pages

Genetic variation within the Mx gene of commercially selected chicken lines reveals multiple haplotypes, recombination and a protein under selection pressure

Author keywords

[No Author keywords available]

Indexed keywords

MYXOVIRUS RESISTANCE PROTEIN; DNA; PROTEIN; UNTRANSLATED REGION;

EID: 84907908404     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0108054     Document Type: Article
Times cited : (22)

References (36)
  • 1
    • 0021981774 scopus 로고
    • An interferon-induced mouse protein involved in the mechanism of resistance to influenza viruses. Its purification to homogeneity and characterization by polyclonal antibodies
    • Horisberger MA, Hochkeppel HK (1985) An interferon-induced mouse protein involved in the mechanism of resistance to influenza viruses. Its purification to homogeneity and characterization by polyclonal antibodies. J Biol Chem 260: 1730-1733.
    • (1985) J Biol Chem , vol.260 , pp. 1730-1733
    • Horisberger, M.A.1    Hochkeppel, H.K.2
  • 2
    • 34547619608 scopus 로고    scopus 로고
    • Polymorphisms of the chicken antiviral MX gene
    • Watanabe T (2007) Polymorphisms of the chicken antiviral MX gene. Cytogenet Genome Res 117: 370-375.
    • (2007) Cytogenet Genome Res , vol.117 , pp. 370-375
    • Watanabe, T.1
  • 3
    • 0028937519 scopus 로고
    • The interferon-induced Mx protein of chickens lacks antiviral activity
    • Bernasconi D, Schultz U, Staeheli P (1995) The interferon-induced Mx protein of chickens lacks antiviral activity. J Interferon Cytokine Res 15: 47-53.
    • (1995) J Interferon Cytokine Res , vol.15 , pp. 47-53
    • Bernasconi, D.1    Schultz, U.2    Staeheli, P.3
  • 4
    • 0027296520 scopus 로고
    • No enhanced influenza virus resistance of murine and avian cells expressing cloned duck Mx protein
    • Bazzigher L, Schwarz A, Staeheli P (1993) No enhanced influenza virus resistance of murine and avian cells expressing cloned duck Mx protein. Virology 195: 100-112.
    • (1993) Virology , vol.195 , pp. 100-112
    • Bazzigher, L.1    Schwarz, A.2    Staeheli, P.3
  • 5
    • 0036230569 scopus 로고    scopus 로고
    • Polymorphisms and the differential antiviral activity of the chicken Mx gene
    • Ko JH, Jin HK, Asano A, Takada A, Ninomiya A, et al. (2002) Polymorphisms and the differential antiviral activity of the chicken Mx gene. Genome Res 12: 595-601.
    • (2002) Genome Res , vol.12 , pp. 595-601
    • Ko, J.H.1    Jin, H.K.2    Asano, A.3    Takada, A.4    Ninomiya, A.5
  • 6
    • 1842715706 scopus 로고    scopus 로고
    • Native antiviral specificity of chicken Mx protein depends on amino acid variation at position 631
    • Ko JH, Takada A, Mitsuhashi T, Agui T, Watanabe T (2004) Native antiviral specificity of chicken Mx protein depends on amino acid variation at position 631. Anim Genet 35: 119-122.
    • (2004) Anim Genet , vol.35 , pp. 119-122
    • Ko, J.H.1    Takada, A.2    Mitsuhashi, T.3    Agui, T.4    Watanabe, T.5
  • 7
    • 34047173075 scopus 로고    scopus 로고
    • MX1 exon 13 polymorphisms in broiler breeder chickens and associations with commercial traits
    • Livant EJ, Avendano S, McLeod S, Ye X, Lamont SJ, et al. (2007) MX1 exon 13 polymorphisms in broiler breeder chickens and associations with commercial traits. Anim Genet 38: 177-179.
    • (2007) Anim Genet , vol.38 , pp. 177-179
    • Livant, E.J.1    Avendano, S.2    McLeod, S.3    Ye, X.4    Lamont, S.J.5
  • 8
    • 34547441265 scopus 로고    scopus 로고
    • Low frequency of the Mx allele for viral resistance predates recent intensive selection in domestic chickens
    • Balkissoon D, Staines K, McCauley J, Wood J, Young J, et al. (2007) Low frequency of the Mx allele for viral resistance predates recent intensive selection in domestic chickens. Immunogenetics 59: 687-691.
    • (2007) Immunogenetics , vol.59 , pp. 687-691
    • Balkissoon, D.1    Staines, K.2    McCauley, J.3    Wood, J.4    Young, J.5
  • 9
    • 84870580794 scopus 로고    scopus 로고
    • Selection of Mx gene genotype as genetic marker for Avian Influenza resistance in Indonesian native chicken
    • Sartika T, Sulandari S, Zein MS (2011) Selection of Mx gene genotype as genetic marker for Avian Influenza resistance in Indonesian native chicken. BMC Proc 5 Suppl 4: S37.
    • (2011) BMC Proc , vol.5 , pp. S37
    • Sartika, T.1    Sulandari, S.2    Zein, M.S.3
  • 10
    • 84869781021 scopus 로고    scopus 로고
    • Associations of chicken Mx1 polymorphism with antiviral responses in avian influenza virus infected embryos and broilers
    • Wang Y, Brahmakshatriya V, Lupiani B, Reddy S, Okimoto R, et al. (2012) Associations of chicken Mx1 polymorphism with antiviral responses in avian influenza virus infected embryos and broilers. Poult Sci 91: 3019-3024.
    • (2012) Poult Sci , vol.91 , pp. 3019-3024
    • Wang, Y.1    Brahmakshatriya, V.2    Lupiani, B.3    Reddy, S.4    Okimoto, R.5
  • 11
    • 79958235317 scopus 로고    scopus 로고
    • Association of Mx1 Asn631 variant alleles with reductions in morbidity, early mortality, viral shedding, and cytokine responses in chickens infected with a highly pathogenic avian influenza virus
    • Ewald SJ, Kapczynski DR, Livant EJ, Suarez DL, Ralph J, et al. (2011) Association of Mx1 Asn631 variant alleles with reductions in morbidity, early mortality, viral shedding, and cytokine responses in chickens infected with a highly pathogenic avian influenza virus. Immunogenetics 63: 363-375.
    • (2011) Immunogenetics , vol.63 , pp. 363-375
    • Ewald, S.J.1    Kapczynski, D.R.2    Livant, E.J.3    Suarez, D.L.4    Ralph, J.5
  • 12
    • 77957890965 scopus 로고    scopus 로고
    • The cytoplasmic location of chicken mx is not the determining factor for its lack of antiviral activity
    • Benfield CT, Lyall JW, Tiley LS (2010) The cytoplasmic location of chicken mx is not the determining factor for its lack of antiviral activity. PLoS ONE 5: e12151.
    • (2010) PLoS ONE , vol.5 , pp. e12151
    • Benfield, C.T.1    Lyall, J.W.2    Tiley, L.S.3
  • 13
    • 47749108361 scopus 로고    scopus 로고
    • Asparagine 631 variants of the chicken Mx protein do not inhibit influenza virus replication in primary chicken embryo fibroblasts or in vitro surrogate assays
    • Benfield CT, Lyall JW, Kochs G, Tiley LS (2008) Asparagine 631 variants of the chicken Mx protein do not inhibit influenza virus replication in primary chicken embryo fibroblasts or in vitro surrogate assays. J Virol 82: 7533-7539.
    • (2008) J Virol , vol.82 , pp. 7533-7539
    • Benfield, C.T.1    Lyall, J.W.2    Kochs, G.3    Tiley, L.S.4
  • 14
    • 79961181302 scopus 로고    scopus 로고
    • Mx is dispensable for interferon-mediated resistance of chicken cells against influenza A virus
    • Schusser B, Reuter A, von der Malsburg A, Penski N, Weigend S, et al. (2011) Mx is dispensable for interferon-mediated resistance of chicken cells against influenza A virus. J Virol 85: 8307-8315.
    • (2011) J Virol , vol.85 , pp. 8307-8315
    • Schusser, B.1    Reuter, A.2    Von Der Malsburg, A.3    Penski, N.4    Weigend, S.5
  • 15
    • 52249087128 scopus 로고    scopus 로고
    • Susceptibility of different chicken lines to H7N1 highly pathogenic avian influenza virus and the role of Mx gene polymorphism coding amino acid position 631
    • Sironi L, Williams JL, Moreno-Martin AM, Ramelli P, Stella A, et al. (2008) Susceptibility of different chicken lines to H7N1 highly pathogenic avian influenza virus and the role of Mx gene polymorphism coding amino acid position 631. Virology.
    • (2008) Virology
    • Sironi, L.1    Williams, J.L.2    Moreno-Martin, A.M.3    Ramelli, P.4    Stella, A.5
  • 16
    • 0027501041 scopus 로고
    • A functional GTP-binding motif is necessary for antiviral activity of Mx proteins
    • Pitossi F, Blank A, Schroder A, Schwarz A, Hussi P, et al. (1993) A functional GTP-binding motif is necessary for antiviral activity of Mx proteins. J Virol 67: 6726-6732.
    • (1993) J Virol , vol.67 , pp. 6726-6732
    • Pitossi, F.1    Blank, A.2    Schroder, A.3    Schwarz, A.4    Hussi, P.5
  • 17
    • 84872806808 scopus 로고    scopus 로고
    • Development of a high density 600K SNP genotyping array for chicken
    • Kranis A, Gheyas AA, Boschiero C, Turner F, Yu L, et al. (2013) Development of a high density 600K SNP genotyping array for chicken. BMC Genomics 14: 59.
    • (2013) BMC Genomics , vol.14 , pp. 59
    • Kranis, A.1    Gheyas, A.A.2    Boschiero, C.3    Turner, F.4    Yu, L.5
  • 18
    • 84875634162 scopus 로고    scopus 로고
    • Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration
    • Thorvaldsdottir H, Robinson JT, Mesirov JP (2013) Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief Bioinform 14: 178-192.
    • (2013) Brief Bioinform , vol.14 , pp. 178-192
    • Thorvaldsdottir, H.1    Robinson, J.T.2    Mesirov, J.P.3
  • 19
    • 84892485253 scopus 로고    scopus 로고
    • Single nucleotide polymorphism genotyping using Kompetitive Allele Specific PCR (KASP): Overview of the technology and its application in crop improvement
    • Semagn K, Babu R, Hearne S, Olsen M (2014) Single nucleotide polymorphism genotyping using Kompetitive Allele Specific PCR (KASP): overview of the technology and its application in crop improvement. Molecular Breeding 33: 1-14.
    • (2014) Molecular Breeding , vol.33 , pp. 1-14
    • Semagn, K.1    Babu, R.2    Hearne, S.3    Olsen, M.4
  • 20
    • 84879313709 scopus 로고    scopus 로고
    • Improving the outcome of a Marek's disease challenge in multiple lines of egg type chickens
    • Fulton JE, Arango J, Arthur JA, Settar P, Kreager KS, et al. (2013) Improving the outcome of a Marek's disease challenge in multiple lines of egg type chickens. Avian Dis 57: 519-522.
    • (2013) Avian Dis , vol.57 , pp. 519-522
    • Fulton, J.E.1    Arango, J.2    Arthur, J.A.3    Settar, P.4    Kreager, K.S.5
  • 21
    • 78650609920 scopus 로고    scopus 로고
    • Evaluation of egg production in layers using random regression models
    • Wolc A, Arango J, Settar P, O'Sullivan NP, Dekkers JC (2011) Evaluation of egg production in layers using random regression models. Poult Sci 90: 30-34.
    • (2011) Poult Sci , vol.90 , pp. 30-34
    • Wolc, A.1    Arango, J.2    Settar, P.3    O'Sullivan, N.P.4    Dekkers, J.C.5
  • 22
    • 77957233168 scopus 로고    scopus 로고
    • Datamonkey 2010: A suite of phylogenetic analysis tools for evolutionary biology
    • Delport W, Poon AF, Frost SD, Kosakovsky Pond SL (2010) Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics 26: 2455-2457.
    • (2010) Bioinformatics , vol.26 , pp. 2455-2457
    • Delport, W.1    Poon, A.F.2    Frost, S.D.3    Kosakovsky Pond, S.L.4
  • 23
    • 80755153638 scopus 로고    scopus 로고
    • Structure of myxovirus resistance protein a reveals intra- and intermolecular domain interactions required for the antiviral function
    • Gao S, von der Malsburg A, Dick A, Faelber K, Schroder GF, et al. (2011) Structure of myxovirus resistance protein a reveals intra- and intermolecular domain interactions required for the antiviral function. Immunity 35: 514-525.
    • (2011) Immunity , vol.35 , pp. 514-525
    • Gao, S.1    Von Der Malsburg, A.2    Dick, A.3    Faelber, K.4    Schroder, G.F.5
  • 24
    • 0028033435 scopus 로고
    • The chicken Mx promoter contains an ISRE motif and confers interferon inducibility to a reporter gene in chick and monkey cells
    • Schumacher B, Bernasconi D, Schultz U, Staeheli P (1994) The chicken Mx promoter contains an ISRE motif and confers interferon inducibility to a reporter gene in chick and monkey cells. Virology 203: 144-148.
    • (1994) Virology , vol.203 , pp. 144-148
    • Schumacher, B.1    Bernasconi, D.2    Schultz, U.3    Staeheli, P.4
  • 25
    • 77958092199 scopus 로고    scopus 로고
    • Expression analyses and antiviral properties of the Beijing-You and White Leghorn myxovirus resistance gene with different amino acids at position 631
    • Yin CG, Zhang CS, Zhang AM, Qin HW, Wang XQ, et al. (2010) Expression analyses and antiviral properties of the Beijing-You and White Leghorn myxovirus resistance gene with different amino acids at position 631. Poult Sci 89: 2259-2264.
    • (2010) Poult Sci , vol.89 , pp. 2259-2264
    • Yin, C.G.1    Zhang, C.S.2    Zhang, A.M.3    Qin, H.W.4    Wang, X.Q.5
  • 26
    • 0026659969 scopus 로고
    • Anatomy of an unusual RNA polymerase II promoter containing a downstream TATA element
    • Kasai Y, Chen H, Flint SJ (1992) Anatomy of an unusual RNA polymerase II promoter containing a downstream TATA element. Mol Cell Biol 12: 2884-2897.
    • (1992) Mol Cell Biol , vol.12 , pp. 2884-2897
    • Kasai, Y.1    Chen, H.2    Flint, S.J.3
  • 27
    • 84864448769 scopus 로고    scopus 로고
    • Template-based protein structure modeling using the RaptorX web server
    • Kallberg M, Wang H, Wang S, Peng J, Wang Z, et al. (2012) Template-based protein structure modeling using the RaptorX web server. Nat Protoc 7: 1511-1522.
    • (2012) Nat Protoc , vol.7 , pp. 1511-1522
    • Kallberg, M.1    Wang, H.2    Wang, S.3    Peng, J.4    Wang, Z.5
  • 28
  • 29
    • 77953028450 scopus 로고    scopus 로고
    • Structural basis of oligomerization in the stalk region of dynamin-like MxA
    • Gao S, von der Malsburg A, Paeschke S, Behlke J, Haller O, et al. (2010) Structural basis of oligomerization in the stalk region of dynamin-like MxA. Nature 465: 502-506.
    • (2010) Nature , vol.465 , pp. 502-506
    • Gao, S.1    Von Der Malsburg, A.2    Paeschke, S.3    Behlke, J.4    Haller, O.5
  • 30
    • 84867659115 scopus 로고    scopus 로고
    • Evolution-guided identification of antiviral specificity determinants in the broadly acting interferon-induced innate immunity factor MxA
    • Mitchell PS, Patzina C, Emerman M, Haller O, Malik HS, et al. (2012) Evolution-guided identification of antiviral specificity determinants in the broadly acting interferon-induced innate immunity factor MxA. Cell Host Microbe 12: 598-604.
    • (2012) Cell Host Microbe , vol.12 , pp. 598-604
    • Mitchell, P.S.1    Patzina, C.2    Emerman, M.3    Haller, O.4    Malik, H.S.5
  • 31
    • 33746894185 scopus 로고    scopus 로고
    • Skewed allele frequencies of an Mx gene mutation with potential resistance to avian influenza virus in different chicken populations
    • Li XY, Qu LJ, Yao JF, Yang N (2006) Skewed allele frequencies of an Mx gene mutation with potential resistance to avian influenza virus in different chicken populations. Poult Sci 85: 1327-1329.
    • (2006) Poult Sci , vol.85 , pp. 1327-1329
    • Li, X.Y.1    Qu, L.J.2    Yao, J.F.3    Yang, N.4
  • 32
    • 33845627714 scopus 로고    scopus 로고
    • Population research of genetic polymorphism at amino acid position 631 in chicken Mx protein with differential antiviral activity
    • Seyama T, Ko JH, Ohe M, Sasaoka N, Okada A, et al. (2006) Population research of genetic polymorphism at amino acid position 631 in chicken Mx protein with differential antiviral activity. Biochem Genet 44: 437-448.
    • (2006) Biochem Genet , vol.44 , pp. 437-448
    • Seyama, T.1    Ko, J.H.2    Ohe, M.3    Sasaoka, N.4    Okada, A.5
  • 33
    • 10044254265 scopus 로고    scopus 로고
    • The role of haplotypes in candidate gene studies
    • Clark AG (2004) The role of haplotypes in candidate gene studies. Genet Epidemiol 27: 321-333.
    • (2004) Genet Epidemiol , vol.27 , pp. 321-333
    • Clark, A.G.1
  • 34
    • 0033799573 scopus 로고    scopus 로고
    • Apolipoprotein E variation at the sequence haplotype level: Implications for the origin and maintenance of a major human polymorphism
    • Fullerton SM, Clark AG, Weiss KM, Nickerson DA, Taylor SL, et al. (2000) Apolipoprotein E variation at the sequence haplotype level: implications for the origin and maintenance of a major human polymorphism. Am J Hum Genet 67: 881-900.
    • (2000) Am J Hum Genet , vol.67 , pp. 881-900
    • Fullerton, S.M.1    Clark, A.G.2    Weiss, K.M.3    Nickerson, D.A.4    Taylor, S.L.5
  • 35
    • 0038612980 scopus 로고    scopus 로고
    • Natural variation in human membrane transporter genes reveals evolutionary and functional constraints
    • Leabman MK, Huang CC, DeYoung J, Carlson EJ, Taylor TR, et al. (2003) Natural variation in human membrane transporter genes reveals evolutionary and functional constraints. Proc Natl Acad Sci U S A 100: 5896-5901.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 5896-5901
    • Leabman, M.K.1    Huang, C.C.2    DeYoung, J.3    Carlson, E.J.4    Taylor, T.R.5
  • 36
    • 34548571976 scopus 로고    scopus 로고
    • Genomic structure and diversity of the chicken Mx gene
    • Li XY, Qu LJ, Hou ZC, Yao JF, Xu GY, et al. (2007) Genomic structure and diversity of the chicken Mx gene. Poult Sci 86: 786-789.
    • (2007) Poult Sci , vol.86 , pp. 786-789
    • Li, X.Y.1    Qu, L.J.2    Hou, Z.C.3    Yao, J.F.4    Xu, G.Y.5


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