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Volumn 1137, Issue , 2014, Pages 17-27

Raptorx server: A resource for template-based protein structure modeling

Author keywords

Homology modeling; Model quality assessment; Prediction; Protein structure prediction; Protein threading; Secondary structure

Indexed keywords

AMINO ACID; DOCKING PROTEIN; PROTEIN;

EID: 84907868263     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4939-0366-5_2     Document Type: Article
Times cited : (233)

References (15)
  • 1
    • 0037435030 scopus 로고    scopus 로고
    • Mass spectrometry- based proteomics
    • Aebersold R, Mann M (2003) Mass spectrometry- based proteomics. Nature 422(6928):198–207
    • (2003) Nature , vol.422 , Issue.6928 , pp. 198-207
    • Aebersold, R.1    Mann, M.2
  • 2
    • 78649723324 scopus 로고    scopus 로고
    • An improved machine learning protocol for the identifi cation of correct Sequest search results
    • Källberg M, Lu H (2010) An improved machine learning protocol for the identifi cation of correct Sequest search results. BMC Bioinformatics 11:591
    • (2010) BMC Bioinformatics , vol.11 , pp. 591
    • Källberg, M.1    Lu, H.2
  • 3
    • 0033963089 scopus 로고    scopus 로고
    • The ENZYME database in 2000
    • Bairoch A (2000) The ENZYME database in 2000. Nucleic Acids Res 28(1):304–305
    • (2000) Nucleic Acids Res , vol.28 , Issue.1 , pp. 304-305
    • Bairoch, A.1
  • 4
    • 74249100674 scopus 로고    scopus 로고
    • Genome-wide association data reveal a global map of genetic interactions among protein complexes
    • Hannum G et al (2009) Genome-wide association data reveal a global map of genetic interactions among protein complexes. PLoS Genet 5(12):e1000782
    • (2009) Plos Genet , vol.5 , Issue.12
    • Hannum, G.1
  • 5
    • 0033954256 scopus 로고    scopus 로고
    • The protein data bank
    • Berman HM et al (2000) The protein data bank. Nucleic Acids Res 28(1):235–242
    • (2000) Nucleic Acids Res , vol.28 , Issue.1 , pp. 235-242
    • Berman, H.M.1
  • 6
    • 0035812694 scopus 로고    scopus 로고
    • Protein structure prediction and structural genomics
    • Baker D, Sali A (2001) Protein structure prediction and structural genomics. Science 294(5540):93–96
    • (2001) Science , vol.294 , Issue.5540 , pp. 93-96
    • Baker, D.1    Sali, A.2
  • 7
    • 80855147852 scopus 로고    scopus 로고
    • RaptorX: Exploiting structure information for protein alignment by statistical inference
    • Peng J, Xu J (2011) RaptorX: exploiting structure information for protein alignment by statistical inference. Proteins 79(Suppl 10):161–171
    • (2011) Proteins , vol.79 , pp. 161-171
    • Peng, J.1    Xu, J.2
  • 8
    • 84864448769 scopus 로고    scopus 로고
    • Template-based protein structure modeling using the RaptorX web server
    • Kallberg M et al (2012) Template-based protein structure modeling using the RaptorX web server. Nat Protoc 7(8):1511–1522
    • (2012) Nat Protoc , vol.7 , Issue.8 , pp. 1511-1522
    • Kallberg, M.1
  • 9
    • 77954196482 scopus 로고    scopus 로고
    • Low-homology protein threading
    • Peng J, Xu J (2010) Low-homology protein threading. Bioinformatics 26(12):i294–i300
    • (2010) Bioinformatics , vol.26 , Issue.12 , pp. 294-300
    • Peng, J.1    Xu, J.2
  • 10
    • 67650439454 scopus 로고    scopus 로고
    • Boosting protein threading accuracy
    • Peng J, Xu J (2009) Boosting protein threading accuracy. Lect Notes Comput Sci 5541:31
    • (2009) Lect Notes Comput Sci , vol.5541 , pp. 31
    • Peng, J.1    Xu, J.2
  • 11
    • 79955715769 scopus 로고    scopus 로고
    • A multiple-template approach to protein threading
    • Peng J, Xu J (2011) A multiple-template approach to protein threading. Proteins 79(6): 1930–1939
    • (2011) Proteins , vol.79 , Issue.6 , pp. 1930-1939
    • Peng, J.1    Xu, J.2
  • 12
    • 77954065271 scopus 로고    scopus 로고
    • I-TASSER: A unifi ed platform for automated protein structure and function prediction
    • Roy A, Kucukural A, Zhang Y (2010) I-TASSER: a unifi ed platform for automated protein structure and function prediction. Nat Protoc 5(4):725–738
    • (2010) Nat Protoc , vol.5 , Issue.4 , pp. 725-738
    • Roy, A.1    Kucukural, A.2    Zhang, Y.3
  • 13
    • 84863373241 scopus 로고    scopus 로고
    • Conditional neural fi elds
    • In: Bengio Y, Schuurmans D, Lafferty J, Williams CKI, Culotta A
    • Peng J, Bo L, Xu J (2009) Conditional neural fi elds. In: Bengio Y, Schuurmans D, Lafferty J, Williams CKI, Culotta A (eds) Advances in neural information processing systems, vol 22. p 1419–1427
    • (2009) Advances in Neural Information Processing Systems , vol.22 , pp. 1419-1427
    • Peng, J.1    Bo, L.2    Xu, J.3
  • 14
    • 77954278629 scopus 로고    scopus 로고
    • Struct2Net: A web service to predict protein–protein interactions using a structure-based approach
    • Singh R et al (2010) Struct2Net: a web service to predict protein–protein interactions using a structure-based approach. Nucleic Acids Res 38:W508–W515
    • (2010) Nucleic Acids Res , vol.38 , pp. 508-515
    • Singh, R.1
  • 15
    • 39049191929 scopus 로고    scopus 로고
    • Struct2net: Integrating structure into protein–protein interaction prediction
    • Singh R, Xu J, Berger B (2006) Struct2net: integrating structure into protein–protein interaction prediction. Pac Symp Biocomput 2006:403–414
    • (2006) Pac Symp Biocomput , vol.2006 , pp. 403-414
    • Singh, R.1    Xu, J.2    Berger, B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.