메뉴 건너뛰기




Volumn 13, Issue 10, 2014, Pages 4377-4387

A normative study of the synovial fluid proteome from healthy porcine knee joints

Author keywords

human; method optimization; origin; plasma; porcine; proteomics; PTM; Synovial fluid; synovium; transcriptomics

Indexed keywords

PROTEOME; MESSENGER RNA; PROTEIN;

EID: 84907835068     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr500587x     Document Type: Article
Times cited : (68)

References (61)
  • 4
    • 70449207585 scopus 로고
    • Characterization of the proteins of certain postmortem human synovial fluids
    • Schmid, K.; Macnair, M. B. Characterization of the proteins of certain postmortem human synovial fluids J. Clin. Invest. 1958, 37, 708-718
    • (1958) J. Clin. Invest. , vol.37 , pp. 708-718
    • Schmid, K.1    Macnair, M.B.2
  • 5
    • 12444293432 scopus 로고
    • Characterization of the proteins of human synovial fluid in certain disease states
    • Schmid, K.; Macnair, M. B. Characterization of the proteins of human synovial fluid in certain disease states J. Clin. Invest. 1956, 35, 814-824
    • (1956) J. Clin. Invest. , vol.35 , pp. 814-824
    • Schmid, K.1    Macnair, M.B.2
  • 6
    • 71649113438 scopus 로고    scopus 로고
    • Strategies to optimize two-dimensional gel electrophoresis analysis of the human joint proteome
    • Ruiz-Romero, C.; Calamia, V.; Carreira, V.; Mateos, J.; Fernández, P.; Blanco, F. J. Strategies to optimize two-dimensional gel electrophoresis analysis of the human joint proteome Talanta 2010, 80, 1552-1560
    • (2010) Talanta , vol.80 , pp. 1552-1560
    • Ruiz-Romero, C.1    Calamia, V.2    Carreira, V.3    Mateos, J.4    Fernández, P.5    Blanco, F.J.6
  • 7
    • 0001168336 scopus 로고
    • The origin and nature of normal human synovial fluid
    • Ropes, M. W.; Rossmeisl, E. C.; Bauer, W. The origin and nature of normal human synovial fluid J. Clin. Invest. 1940, 19, 795-799
    • (1940) J. Clin. Invest. , vol.19 , pp. 795-799
    • Ropes, M.W.1    Rossmeisl, E.C.2    Bauer, W.3
  • 8
    • 77951408136 scopus 로고
    • An electrophoretic study of normal and post-mortem human and bovine synovial fluids
    • Platt, D.; Pigman, W.; Holley, H. L.; Patton, F. M. An electrophoretic study of normal and post-mortem human and bovine synovial fluids Arch. Biochem. Biophys. 1956, 64, 152-163
    • (1956) Arch. Biochem. Biophys. , vol.64 , pp. 152-163
    • Platt, D.1    Pigman, W.2    Holley, H.L.3    Patton, F.M.4
  • 9
    • 0019834651 scopus 로고
    • Permeability of rheumatoid and normal human synovium to specific plasma proteins
    • Levick, J. R. Permeability of rheumatoid and normal human synovium to specific plasma proteins Arthritis Rheum. 1981, 24, 1550-1560
    • (1981) Arthritis Rheum. , vol.24 , pp. 1550-1560
    • Levick, J.R.1
  • 11
    • 84858187870 scopus 로고    scopus 로고
    • The impact of osteoarthritis in the United States: A population-health perspective
    • Murphy, L.; Helmick, C. G. The impact of osteoarthritis in the United States: a population-health perspective Am. J. Nurs. 2012, 112, S13-S19
    • (2012) Am. J. Nurs. , vol.112 , pp. 13-S19
    • Murphy, L.1    Helmick, C.G.2
  • 13
    • 84860447204 scopus 로고    scopus 로고
    • Incidence and risk factors for injuries to the anterior cruciate ligament in national collegiate athletic association football data from the 2004-2005 through 2008-2009 National Collegiate Athletic Association Injury Surveillance System
    • Dragoo, J. L.; Braun, H. J.; Durham, J. L.; Chen, M. R.; Harris, A. H. S. Incidence and risk factors for injuries to the anterior cruciate ligament in national collegiate athletic association football data from the 2004-2005 through 2008-2009 National Collegiate Athletic Association Injury Surveillance System Am. J. Sports Med. 2012, 40, 990-995
    • (2012) Am. J. Sports Med. , vol.40 , pp. 990-995
    • Dragoo, J.L.1    Braun, H.J.2    Durham, J.L.3    Chen, M.R.4    Harris, A.H.S.5
  • 14
    • 33751058800 scopus 로고    scopus 로고
    • Posttraumatic osteoarthritis: A first estimate of incidence, prevalence, and burden of disease
    • Brown, T. D.; Johnston, R. C.; Saltzman, C. L.; Marsh, J. L.; Buckwalter, J. A. Posttraumatic osteoarthritis: a first estimate of incidence, prevalence, and burden of disease J. Orthop. Trauma 2006, 20, 739-744
    • (2006) J. Orthop. Trauma , vol.20 , pp. 739-744
    • Brown, T.D.1    Johnston, R.C.2    Saltzman, C.L.3    Marsh, J.L.4    Buckwalter, J.A.5
  • 15
    • 84867868437 scopus 로고    scopus 로고
    • Osteoarthritis year 2012 in review: Biomarkers
    • Mobasheri, A. Osteoarthritis year 2012 in review: biomarkers Osteoarthritis Cartilage 2012, 1-14
    • (2012) Osteoarthritis Cartilage , pp. 1-14
    • Mobasheri, A.1
  • 19
    • 77949938199 scopus 로고    scopus 로고
    • Proteomics role in the search for improved diagnosis, prognosis and treatment of osteoarthritis
    • Ruiz-Romero, C.; Blanco, F. J. Proteomics role in the search for improved diagnosis, prognosis and treatment of osteoarthritis Osteoarthritis Cartilage 2010, 18, 500-509
    • (2010) Osteoarthritis Cartilage , vol.18 , pp. 500-509
    • Ruiz-Romero, C.1    Blanco, F.J.2
  • 21
    • 0035161905 scopus 로고    scopus 로고
    • Use of two-dimensional gel electrophoresis to measure changes in synovial fluid proteins from patients with rheumatoid arthritis treated with antibody to CD4
    • Smith, M. A.; Bains, S. K.; Betts, J. C.; Choy, E. H. S.; Zanders, E. D. Use of two-dimensional gel electrophoresis to measure changes in synovial fluid proteins from patients with rheumatoid arthritis treated with antibody to CD4 Clin. Diagn. Lab. Immunol. 2001, 8, 105-111
    • (2001) Clin. Diagn. Lab. Immunol. , vol.8 , pp. 105-111
    • Smith, M.A.1    Bains, S.K.2    Betts, J.C.3    Choy, E.H.S.4    Zanders, E.D.5
  • 22
    • 84883677120 scopus 로고    scopus 로고
    • Innate immunity activation involved in unprotected porcine auto-transplant kidneys preserved by naked caspase-3 siRNA
    • Yang, C.; Li, L.; Xue, Y.; Zhao, Z.; Zhao, T.; Jia, Y.; Rong, R.; Xu, M.; Nicholson, M. L.; Zhu, T. Innate immunity activation involved in unprotected porcine auto-transplant kidneys preserved by naked caspase-3 siRNA J. Transl. Med. 2013, 11, 210
    • (2013) J. Transl. Med. , vol.11 , pp. 210
    • Yang, C.1    Li, L.2    Xue, Y.3    Zhao, Z.4    Zhao, T.5    Jia, Y.6    Rong, R.7    Xu, M.8    Nicholson, M.L.9    Zhu, T.10
  • 23
    • 79960329639 scopus 로고    scopus 로고
    • Evaluation of rotational instability in the anterior cruciate ligament deficient knee using triaxial accelerometer: A biomechanical model in porcine knees
    • Maeyama, A.; Hoshino, Y.; Debandi, A.; Kato, Y.; Saeki, K.; Asai, S.; Goto, B.; Smolinski, P.; Fu, F. H. Evaluation of rotational instability in the anterior cruciate ligament deficient knee using triaxial accelerometer: a biomechanical model in porcine knees Knee Surg., Sports Traumatol., Arthrosc. 2011, 19, 1233-1238
    • (2011) Knee Surg., Sports Traumatol., Arthrosc. , vol.19 , pp. 1233-1238
    • Maeyama, A.1    Hoshino, Y.2    Debandi, A.3    Kato, Y.4    Saeki, K.5    Asai, S.6    Goto, B.7    Smolinski, P.8    Fu, F.H.9
  • 24
    • 77953206665 scopus 로고    scopus 로고
    • A Comparison of Differential Biomarkers of Osteoarthritis with and without Post-traumatic Injury in the Hartley Guinea Pig Model
    • Wei, L.; Fleming, B. C.; Sun, X.; Teeple, E.; Wu, W.; Jay, G. D.; Elsaid, K. A.; Luo, J.; Machan, J. T.; Chen, Q. A Comparison of Differential Biomarkers of Osteoarthritis with and without Post-traumatic Injury in the Hartley Guinea Pig Model J. Orthop. Res. 2010, 28, 900-906
    • (2010) J. Orthop. Res. , vol.28 , pp. 900-906
    • Wei, L.1    Fleming, B.C.2    Sun, X.3    Teeple, E.4    Wu, W.5    Jay, G.D.6    Elsaid, K.A.7    Luo, J.8    Machan, J.T.9    Chen, Q.10
  • 26
    • 84863824594 scopus 로고    scopus 로고
    • Pig proteomics: A review of a species in the crossroad between biomedical and food sciences
    • De Almeida, A. M.; Bendixen, E. Pig proteomics: a review of a species in the crossroad between biomedical and food sciences J. Proteomics 2012, 75, 4296-4314
    • (2012) J. Proteomics , vol.75 , pp. 4296-4314
    • De Almeida, A.M.1    Bendixen, E.2
  • 28
    • 84881398809 scopus 로고    scopus 로고
    • Use of a bioactive scaffold to stimulate ACL healing also minimizes post-traumatic osteoarthritis after surgery
    • Murray, M. M.; Fleming, B. C. Use of a bioactive scaffold to stimulate ACL healing also minimizes post-traumatic osteoarthritis after surgery Am. J. Sports Med. 2013, 41, 1762-1770
    • (2013) Am. J. Sports Med. , vol.41 , pp. 1762-1770
    • Murray, M.M.1    Fleming, B.C.2
  • 29
    • 84860344685 scopus 로고    scopus 로고
    • Biomechanical outcomes after bio-enhanced anterior cruciate ligament repair and anterior cruciate ligament reconstruction are equal in a porcine model
    • Vavken, P.; Fleming, B. C.; Mastrangelo, A. N.; Machan, J. T.; Murray, M. M. Biomechanical outcomes after bio-enhanced anterior cruciate ligament repair and anterior cruciate ligament reconstruction are equal in a porcine model Arthroscopy 2012, 28, 672-680
    • (2012) Arthroscopy , vol.28 , pp. 672-680
    • Vavken, P.1    Fleming, B.C.2    Mastrangelo, A.N.3    Machan, J.T.4    Murray, M.M.5
  • 32
    • 0035298820 scopus 로고    scopus 로고
    • Detection of tyrosine phosphorylated peptides by precursor ion scanning quadrupole TOF mass spectrometry in positive ion mode
    • Steen, H.; Küster, B.; Fernandez, M.; Pandey, A.; Mann, M. Detection of tyrosine phosphorylated peptides by precursor ion scanning quadrupole TOF mass spectrometry in positive ion mode Anal. Chem. 2001, 73, 1440-1448
    • (2001) Anal. Chem. , vol.73 , pp. 1440-1448
    • Steen, H.1    Küster, B.2    Fernandez, M.3    Pandey, A.4    Mann, M.5
  • 33
    • 0032930639 scopus 로고    scopus 로고
    • Mapping of phosphorylation sites of gel-isolated proteins by nanoelectrospray tandem mass spectrometry: Potentials and limitations
    • Neubauer, G.; Mann, M. Mapping of phosphorylation sites of gel-isolated proteins by nanoelectrospray tandem mass spectrometry: potentials and limitations Anal. Chem. 1999, 71, 235-242
    • (1999) Anal. Chem. , vol.71 , pp. 235-242
    • Neubauer, G.1    Mann, M.2
  • 35
    • 57449099865 scopus 로고    scopus 로고
    • MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
    • Cox, J.; Mann, M. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification Nat. Biotechnol. 2008, 26, 1367-1372
    • (2008) Nat. Biotechnol. , vol.26 , pp. 1367-1372
    • Cox, J.1    Mann, M.2
  • 37
    • 56449107474 scopus 로고    scopus 로고
    • BioVenn - A web application for the comparison and visualization of biological lists using area-proportional Venn diagrams
    • Hulsen, T.; de Vlieg, J.; Alkema, W. BioVenn-a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams BMC Genomics 2008, 9, 488
    • (2008) BMC Genomics , vol.9 , pp. 488
    • Hulsen, T.1    De Vlieg, J.2    Alkema, W.3
  • 40
    • 84884514583 scopus 로고    scopus 로고
    • An RNA-seq protocol to identify mRNA expression changes in mouse diaphyseal bone: Applications in mice with bone property altering Lrp5 mutations
    • Ayturk, U. M.; Jacobsen, C. M.; Christodoulou, D. C.; Gorham, J.; Seidman, J. G.; Seidman, C. E.; Robling, A. G.; Warman, M. L. An RNA-seq protocol to identify mRNA expression changes in mouse diaphyseal bone: applications in mice with bone property altering Lrp5 mutations J. Bone Miner. Res. 2013, 28, 2081-2093
    • (2013) J. Bone Miner. Res. , vol.28 , pp. 2081-2093
    • Ayturk, U.M.1    Jacobsen, C.M.2    Christodoulou, D.C.3    Gorham, J.4    Seidman, J.G.5    Seidman, C.E.6    Robling, A.G.7    Warman, M.L.8
  • 43
    • 36948998566 scopus 로고    scopus 로고
    • Proteomic analysis of human plasma proteins by two-dimensional gel electrophoresis and by antibody arrays following depletion of high-abundance proteins
    • Desrosiers, R. R.; Beaulieu, é.; Buchanan, M.; Béliveau, R. Proteomic analysis of human plasma proteins by two-dimensional gel electrophoresis and by antibody arrays following depletion of high-abundance proteins Cell Biochem. Biophys. 2007, 49, 182-195
    • (2007) Cell Biochem. Biophys. , vol.49 , pp. 182-195
    • Desrosiers, R.R.1    Beaulieu, E.2    Buchanan, M.3    Béliveau, R.4
  • 44
    • 0033997885 scopus 로고    scopus 로고
    • The thyroxine-binding proteins
    • Schussler, G. C. The thyroxine-binding proteins Thyroid 2000, 10, 141-149
    • (2000) Thyroid , vol.10 , pp. 141-149
    • Schussler, G.C.1
  • 47
  • 48
    • 84874967213 scopus 로고    scopus 로고
    • Protein carbamylation: In vivo modification or in vitro artefact?
    • Kollipara, L.; Zahedi, R. P. Protein carbamylation: in vivo modification or in vitro artefact? Proteomics 2013, 13, 941-944
    • (2013) Proteomics , vol.13 , pp. 941-944
    • Kollipara, L.1    Zahedi, R.P.2
  • 49
    • 84891781607 scopus 로고    scopus 로고
    • Optimizing the identification of citrullinated peptides by mass spectrometry: Utilizing the inability of trypsin to cleave after citrullinated amino acids
    • Bennike, T.; Lauridsen, K. B.; Olesen, M. K.; Andersen, V.; Birkelund, S.; Stensballe, A. Optimizing the identification of citrullinated peptides by mass spectrometry: utilizing the inability of trypsin to cleave after citrullinated amino acids J. Proteomics Bioinform. 2013, 06, 288-295
    • (2013) J. Proteomics Bioinform. , vol.6 , pp. 288-295
    • Bennike, T.1    Lauridsen, K.B.2    Olesen, M.K.3    Andersen, V.4    Birkelund, S.5    Stensballe, A.6
  • 50
    • 84896913454 scopus 로고    scopus 로고
    • Biomarkers in inflammatory bowel diseases: Current status and proteomics identification strategies
    • Bennike, T.; Birkelund, S.; Stensballe, A.; Andersen, V. Biomarkers in inflammatory bowel diseases: current status and proteomics identification strategies World J. Gastroenterol. 2014, 20, 3231-3244
    • (2014) World J. Gastroenterol. , vol.20 , pp. 3231-3244
    • Bennike, T.1    Birkelund, S.2    Stensballe, A.3    Andersen, V.4
  • 51
    • 0025375197 scopus 로고
    • Concentrations of glycosaminoglycans in synovial fluids and their relation with immunological and inflammatory mediators in rheumatoid arthritis
    • Bensouyad, A.; Hollander, A. P.; Dularay, B.; Bedwell, A. E.; Cooper, R. A.; Hutton, C. W.; Dieppe, P. A.; Elson, C. J. Concentrations of glycosaminoglycans in synovial fluids and their relation with immunological and inflammatory mediators in rheumatoid arthritis Ann. Rheum. Dis. 1990, 49, 301-307
    • (1990) Ann. Rheum. Dis. , vol.49 , pp. 301-307
    • Bensouyad, A.1    Hollander, A.P.2    Dularay, B.3    Bedwell, A.E.4    Cooper, R.A.5    Hutton, C.W.6    Dieppe, P.A.7    Elson, C.J.8
  • 52
    • 0021686261 scopus 로고
    • Relative amounts of chondroitin sulfate and hyaluronic acid in synovial fluid from normal and osteochondrotic swine joints
    • Nakano, T.; Aherne, F. X.; Thompson, J. R. Relative amounts of chondroitin sulfate and hyaluronic acid in synovial fluid from normal and osteochondrotic swine joints Can. J. Comp. Med. 1984, 48, 434-436
    • (1984) Can. J. Comp. Med. , vol.48 , pp. 434-436
    • Nakano, T.1    Aherne, F.X.2    Thompson, J.R.3
  • 54
    • 72149100726 scopus 로고    scopus 로고
    • The dynamic range problem in the analysis of the plasma proteome
    • Hortin, G. L.; Sviridov, D. The dynamic range problem in the analysis of the plasma proteome J. Proteomics 2010, 73, 629-636
    • (2010) J. Proteomics , vol.73 , pp. 629-636
    • Hortin, G.L.1    Sviridov, D.2
  • 61
    • 84870680444 scopus 로고    scopus 로고
    • The PRoteomics IDEntification (PRIDE) converter 2 framework: An improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium
    • Côté, R. G.; Griss, J.; Dianes, J. A.; Wang, R.; Wright, J. C.; van den Toorn, H. W. P.; van Breukelen, B.; Heck, A. J. R.; Hulstaert, N.; Martens, L. The PRoteomics IDEntification (PRIDE) converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium Mol. Cell. Proteomics 2012, 11, 1682-1689
    • (2012) Mol. Cell. Proteomics , vol.11 , pp. 1682-1689
    • Côté, R.G.1    Griss, J.2    Dianes, J.A.3    Wang, R.4    Wright, J.C.5    Van Den Toorn, H.W.P.6    Van Breukelen, B.7    Heck, A.J.R.8    Hulstaert, N.9    Martens, L.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.