Gelatin methacrylate (GelMA) mediated electrochemical DNA biosensor for DNA hybridization

Biosensors and Bioelectronics

Volumn 64, Issue , 2015, Pages 456-461

  Topkaya, Seda Nur ^a  

^a EGE UNIVERSITY   (Turkey)

Author keywords

Differential Pulse Voltammetry (DPV); Electrochemical DNA biosensor; Electrochemical Impedance Spectroscopy (EIS); Hybridization indicator; Polymer; Sensitive hybridization detection

Indexed keywords

POLYMERS;

DIFFERENTIAL PULSE VOLTAMMETRY; DNA HYBRIDIZATION; ELECTROCHEMICAL DNA BIOSENSORS; HYBRIDIZATION INDICATORS;

ELECTROCHEMICAL IMPEDANCE SPECTROSCOPY;

DNA; GELATIN METHACRYLATE; GUANINE; OLIGONUCLEOTIDE; POLYMETHACRYLIC ACID; UNCLASSIFIED DRUG; GELATIN; METHACRYLIC ACID DERIVATIVE;

ARTICLE; CYCLIC POTENTIOMETRY; DNA DETERMINATION; DNA HYBRIDIZATION; ELECTROCHEMICAL DETECTION; ELECTROCHEMICAL IMPEDANCE SPECTROSCOPY; ELECTRODE; ENZYMIC BIOSENSOR; IMMOBILIZATION; LIMIT OF DETECTION; MOLECULAR PROBE; OXIDATION; PENCIL GRAPHITE ELECTRODE; SIGNAL DETECTION; CHEMISTRY; CONDUCTOMETRY; DEVICE FAILURE ANALYSIS; DEVICES; DNA SEQUENCE; EQUIPMENT DESIGN; GENETIC PROCEDURES; GENETICS; IN SITU HYBRIDIZATION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE;

BASE SEQUENCE; BIOSENSING TECHNIQUES; CONDUCTOMETRY; DNA; ELECTRODES; EQUIPMENT DESIGN; EQUIPMENT FAILURE ANALYSIS; GELATIN; IN SITU HYBRIDIZATION; METHACRYLATES; MOLECULAR SEQUENCE DATA; SEQUENCE ANALYSIS, DNA;

EID: 84907626342     PISSN: 09565663     EISSN: 18734235     Source Type: Journal    
DOI: 10.1016/j.bios.2014.09.060     Document Type: Article

References (31)

1. Ali M., Neumann R., Ensinger W. Sequence-specific recognition of DNA oligomer using peptide nucleic acid (PNA)-modified synthetic Ion channels: PNA/DNA hybridization in nanoconfined environment. Acs Nano 2010, 4(12):7267-7274.
2. Alizadeh T., Akbari A. A capacitive biosensor for ultra-trace level urea determination based on nano-sized urea-imprinted polymer receptors coated on graphite electrode surface. Biosens. Bioelectron. 2013, 43:321-327.
3. Arslan A., Kiralp S., Toppare L., Bozkurt A. Novel conducting polymer electrolyte biosensor based on poly(1-vinyl imidazole) and poly(acrylic acid) networks. Langmuir 2006, 22(6):2912-2915.
4. Aydinlik S., Ozkan-Ariksoysal D., Kara P., Sayiner A.A., Ozsoz M. A nucleic acid-based electrochemical biosensor for the detection of influenza B virus from PCR samples using gold nanoparticle-adsorbed disposable graphite electrode and Meldola's blue as an intercalator. Anal. Methods 2011, 3(7):1607-1614.
5. Berney H., West J., Haefele E., Alderman J., Lane W., Collins J.K. A DNA diagnostic biosensor: development, characterisation and performance. Sens. Actuators B - Chem. 2000, 68(1-3):100-108.
6. Budnikov H.C., Evtugyn G.A., Porfireva A.V. Electrochemical DNA sensors based on electropolymerized materials. Talanta 2012, 102:137-155.
7. Chen C.S., Chang K.N., Chen Y.H., Lee C.K., Lee B.Y.J., Lee A.S.Y. Development of a label-free impedance biosensor for detection of antibody-antigen interactions based on a novel conductive linker. Biosens. Bioelectron. 2011, 26(6):3072-3076.
8. Cruys-Bagger N., Ren G.L., Tatsumi H., Baumann M.J., Spodsberg N., Andersen H.D., Gorton L., Borch K., Westh P. An amperometric enzyme biosensor for real-time measurements of cellobiohydrolase activity on insoluble cellulose. Biotechnol. Bioeng. 2012, 109(12):3199-3204.
9. Das M., Dhand C., Sumana G., Srivastava A.K., Nagarajan R., Malhotra B.D. Electrophoretically fabricated core-shell CNT-DNA biowires for biosensing. J. Mater. Chem. 2012, 22(6):2727-2732.
10. Elliott C. Biosensor detects toxic drugs in food. Trac-Trends Anal. Chem. 2006, 25(11). (Iv-V).
11. Gu J.Y., Lu X.J., Ju H.X. DNA sensor for recognition of native yeast DNA sequence with methylene blue as an electrochemical hybridization indicator. Electroanalysis 2002, 14(13):949-954.
12. Han J.F., Wang Q., Zhang Z.R., Gong T., Sun X. Cationic bovine serum albumin based self-assembled nanoparticles as siRNA delivery vector for treating lung metastatic cancer. Small 2014, 10(3):524-535.
13. Jung D.H., Kim B.H., Ko Y.K., Jung M.S., Jung S., Lee S.Y., Jung H.T. Covalent attachment and hybridization of DNA oligonucleotides on patterned single-walled carbon nanotube films. Langmuir 2004, 20(20):8886-8891.
14. Kiilerich-Pedersen K., Poulsen C.R., Jain T., Rozlosnik N. Polymer based biosensor for rapid electrochemical detection of virus infection of human cells. Biosens. Bioelectron. 2011, 28(1):386-392.
15. Kowalczyk A., Nowicka A.M., Jurczakowski R., Niedzialkowski P., Ossowski T., Stojek Z. New anthraquinone derivatives as electrochemical redox indicators for the visualization of the DNA hybridization process. Electroanalysis 2010, 22(1):49-59.
16. Liu J.W. Oligonucleotide-functionalized hydrogels as stimuli responsive materials and biosensors. Soft Matter 2011, 7(15):6757-6767.
17. Lucarelli F., Marrazza G., Turner A.P.F., Mascini M. Carbon and gold electrodes as electrochemical transducers for DNA hybridisation sensors. Biosens. Bioelectron. 2004, 19(6):515-530.
18. Mohan R., Mach K.E., Bercovici M., Pan Y., Dhulipala L., Wong P.K., Liao J.C. Clinical validation of integrated nucleic acid and protein detection on an electrochemical biosensor array for urinary tract infection diagnosis. Plos One 2011, 6:10.
19. Niu S.Y., Zhao M., Ren R., Zhang S.S. Carbon nanotube-enhanced DNA biosensor for DNA hybridization detection using manganese(II)-Schiff base complex as hybridization indicator. J. Inorg. Biochem. 2009, 103(1):43-49.
20. Rijiravanich P., Somasundrum M., Surareungchai W. Femtomolar electrochemical detection of DNA hybridization using hollow polyelectrolyte shells bearing silver nanoparticles. Anal. Chem. 2008, 80(10):3904-3909.
21. Sabatani E., Rubinstein I., Maoz R., Sagiv J. Organized self-assembling monolayers on electrodes.1. Octadecyl derivatives on gold. J. Electroanal. Chem. 1987, 219(1-2):365-371.
22. Shimomura A., Nishino T., Maruyama T. Display of amino groups on substrate surfaces by simple dip-coating of methacrylate-based polymers and its application to DNA immobilization. Langmuir 2013, 29(3):932-938.
23. Shin S.R., Aghaei-Ghareh-Bolagh B., Dang T.T., Topkaya S.N., Gao X.G., Yang S.Y., Jung S.M., Oh J.H., Dokmeci M.R., Tang X.W., Khademhosseini A. Cell-laden microengineered and mechanically tunable hybrid hydrogels of gelatin and graphene oxide. Adv. Mater. 2013, 25(44):6385-6391.
24. Topkaya S.N., Aydinlik S., Aladag N., Ozsoz M., Ozkan-Ariksoysal D. Different DNA immobilization strategies for the interaction of anticancer drug irinotecan with DNA based on electrochemical DNA biosensors. Comb. Chem. High Throughput Screen. 2010, 13(7):582-589.
25. Topkaya S.N., Ozkan-Ariksoysal D., Kosova B., Ozel R., Ozsoz M. Electrochemical DNA biosensor for detecting cancer biomarker related to glutathione S-transferase P1 (GSTP1) hypermethylation in real samples. Biosens. Bioelectron. 2012, 31(1):516-522.
26. Wang L.H., Liao X.L., Ding Y.T., Gao F., Wang Q.X. DNA biosensor based on a glassy carbon electrode modified with electropolymerized Eriochrome Black T. Microchim. Acta 2014, 181(1-2):155-162.
27. Wang Q.X., Gao F., Gao F., Li S.X., Weng W., Liu F.Q., Jiao K. A novel hybridization indicator for the low-background detection of short DNA fragments based on an electrically neutral cobalt(II) complex. Biosens. Bioelectron. 2012, 32(1):50-55.
28. Wang T.X., Hu N., Cao J.Y., Wu J.Y., Su K.Q., Wang P. A cardiomyocyte-based biosensor for antiarrhythmic drug evaluation by simultaneously monitoring cell growth and beating. Biosens. Bioelectron. 2013, 49:9-13.
29. Yu X.B., Lv R., Ma Z.Q., Liu Z.H., Hao Y.H., Li Q.Z., Xu D.K. An impedance array biosensor for detection of multiple antibody-antigen interactions. Analyst 2006, 131(6):745-750.
30. Zhang Q.R., Dai P.P., Yang Z.S. Sensitive DNA-hybridization biosensors based on gold nanoparticles for testing DNA damage by Cd(II) ions. Microchim. Acta 2011, 173(3-4):347-352.
31. Zhang Y.N., Liu Y., Chu Z.Y., Shi L., Jin W.Q. Amperometric glucose biosensor based on direct assembly of Prussian blue film with ionic liquid-chitosan matrix assisted enzyme immobilization. Sens. Actuators B-Chem. 2013, 176:978-984.