메뉴 건너뛰기




Volumn 9, Issue 9, 2014, Pages

Molecular phylogenetics and systematics of the bivalve family Ostreidae based on rRNA sequence-structure models and multilocus species tree

Author keywords

[No Author keywords available]

Indexed keywords

INTERNAL TRANSCRIBED SPACER 2; RIBOSOME RNA; RNA 16S;

EID: 84907588684     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0108696     Document Type: Article
Times cited : (80)

References (78)
  • 4
    • 0000889804 scopus 로고
    • Synopsis of the supraspecific classification of living oysters (Bivalvia: Gryphaeidae and Ostreidae)
    • Harry HW (1985) Synopsis of the supraspecific classification of living oysters (Bivalvia: Gryphaeidae and Ostreidae). Veliger 28: 121-158.
    • (1985) Veliger , vol.28 , pp. 121-158
    • Harry, H.W.1
  • 5
    • 77957305215 scopus 로고
    • The generic status of living oysters and the scientific name of the common American species
    • Gunter G (1950) The generic status of living oysters and the scientific name of the common American species. Am Midl Nat 43: 438-449.
    • (1950) Am Midl Nat , vol.43 , pp. 438-449
    • Gunter, G.1
  • 6
    • 0022212459 scopus 로고
    • Oyster beds, morphologic response to changing substrate conditions
    • Bayer U, Seilacher A, editors New York: Springer-Verlag.
    • Seilacher A, Matyla BA, Wierzbowski A (1985) Oyster beds, morphologic response to changing substrate conditions. In: Bayer U, Seilacher A, editors. Sedimentary and Evolutionary Cycles. New York: Springer-Verlag. pp. 421-435.
    • (1985) Sedimentary and Evolutionary Cycles , pp. 421-435
    • Seilacher, A.1    Matyla, B.A.2    Wierzbowski, A.3
  • 7
    • 0001061395 scopus 로고
    • Recent advances in oyster biology
    • Korringa P (1952) Recent advances in oyster biology. Q Rev Biol 27: 266-308.
    • (1952) Q Rev Biol , vol.27 , pp. 266-308
    • Korringa, P.1
  • 8
    • 0032240535 scopus 로고    scopus 로고
    • Phylogenetic analysis of southern hemisphere flat oysters based on partial mitochondrial 16S rDNA gene sequences
    • Jozefowicz CJ, Ó Foighil D (1998) Phylogenetic analysis of southern hemisphere flat oysters based on partial mitochondrial 16S rDNA gene sequences. Mol Phylogenet Evol 10: 426-435.
    • (1998) Mol Phylogenet Evol , vol.10 , pp. 426-435
    • Jozefowicz, C.J.1    Ófoighil, D.2
  • 9
    • 0345393089 scopus 로고    scopus 로고
    • Mitochondrial DNA and morphological identification of a new species of Crassostrea (Bivalvia, Ostreidae) cultured for centuries in the Pearl River Delta, Hong Kong, China
    • Lam K, Morton B (2003) Mitochondrial DNA and morphological identification of a new species of Crassostrea (Bivalvia, Ostreidae) cultured for centuries in the Pearl River Delta, Hong Kong, China. Aquaculture 228: 1-13.
    • (2003) Aquaculture , vol.228 , pp. 1-13
    • Lam, K.1    Morton, B.2
  • 10
    • 4544294024 scopus 로고    scopus 로고
    • The oysters of hong kong (bivalvia: Ostreidae and gryphaeidae)
    • Lam K, Morton B (2004) The oysters of Hong Kong (Bivalvia: Ostreidae and Gryphaeidae). Raffles. B Zool 52: 11-28.
    • (2004) Raffles. B Zool , vol.52 , pp. 11-28
    • Lam, K.1    Morton, B.2
  • 11
    • 80051683936 scopus 로고    scopus 로고
    • Identifying the true oysters (Bivalvia, Ostreidae) with mitochondrial phylogeny and distance-based DNA barcoding
    • Liu J, Li Q, Kong L, Yu H, Zheng X (2011) Identifying the true oysters (Bivalvia, Ostreidae) with mitochondrial phylogeny and distance-based DNA barcoding. Mol Ecol Resour 11: 820-830.
    • (2011) Mol Ecol Resour , vol.11 , pp. 820-830
    • Liu, J.1    Li, Q.2    Kong, L.3    Yu, H.4    Zheng, X.5
  • 12
    • 0034094866 scopus 로고    scopus 로고
    • Evolution of parental care and ovulation behavior in oysters
    • Ó Foighil D, Taylor D (2000) Evolution of Parental Care and Ovulation Behavior in Oysters. Mol Phylogenet Evol 15: 301-313.
    • (2000) Mol Phylogenet Evol , vol.15 , pp. 301-313
    • Ófoighil, D.1    Taylor, D.2
  • 13
    • 33747882590 scopus 로고    scopus 로고
    • Morphological and mitochondrial-dna analysis of the indo-west pacific rock oysters (ostreidae, saccostrea species)
    • Lam K, Morton B (2006) Morphological and mitochondrial-DNA analysis of the Indo-West Pacific rock oysters (Ostreidae, Saccostrea species). J Mollus Stud 72: 235-245.
    • (2006) J Mollus Stud , vol.72 , pp. 235-245
    • Lam, K.1    Morton, B.2
  • 14
    • 0042127128 scopus 로고    scopus 로고
    • Taxonomic status of four Crassostrea oysters from China as inferred from mitochondrial DNA sequences
    • Yu Z, Kong X, Zhang L, Guo X, Xiang J (2003) Taxonomic status of four Crassostrea oysters from China as inferred from mitochondrial DNA sequences. J Shellfish Res 22: 31-38.
    • (2003) J Shellfish Res , vol.22 , pp. 31-38
    • Yu, Z.1    Kong, X.2    Zhang, L.3    Guo, X.4    Xiang, J.5
  • 16
    • 42449153540 scopus 로고    scopus 로고
    • Identification of Crassostrea ariakensis and related oysters by multiplex species-specific PCR
    • Wang HY, Guo XM (2008) Identification of Crassostrea ariakensis and related oysters by multiplex species-specific PCR. J Shellfish Res 27: 481-487.
    • (2008) J Shellfish Res , vol.27 , pp. 481-487
    • Wang, H.Y.1    Guo, X.M.2
  • 17
    • 38349154238 scopus 로고    scopus 로고
    • Molecular phylogenies help resolve taxonomic confusion with Asian Crassostrea oyster species
    • Reece KS, Cordes JF, Stubbs JB, Hudson KL, Francis EA (2008) Molecular phylogenies help resolve taxonomic confusion with Asian Crassostrea oyster species. Mar Biol 153: 709-721.
    • (2008) Mar Biol , vol.153 , pp. 709-721
    • Reece, K.S.1    Cordes, J.F.2    Stubbs, J.B.3    Hudson, K.L.4    Francis, E.A.5
  • 18
    • 0037218088 scopus 로고    scopus 로고
    • Molecular genetic identification tools for three commercially cultured oysters (Crassostrea belcheri, Crassostrea iredalei, and Saccostrea cucullata) in Thailand
    • Klinbunga S, Khamnamtong N, Tassanakajon A, Puanglarp N, Jarayabhand P (2003) Molecular genetic identification tools for three commercially cultured oysters (Crassostrea belcheri, Crassostrea iredalei, and Saccostrea cucullata) in Thailand. Mar Biotechnol 5: 27-36.
    • (2003) Mar Biotechnol , vol.5 , pp. 27-36
    • Klinbunga, S.1    Khamnamtong, N.2    Tassanakajon, A.3    Puanglarp, N.4    Jarayabhand, P.5
  • 19
    • 24344478852 scopus 로고    scopus 로고
    • Molecular taxonomy of cupped oysters (Crassostrea, Saccostrea, and Striostrea) in Thailand based on COI, 16S, and 18S rDNA polymorphism
    • Klinbunga S, Khamnamtong B, Puanglarp N, Jarayabhand P, Yoosukh W, et al. (2005) Molecular taxonomy of cupped oysters (Crassostrea, Saccostrea, and Striostrea) in Thailand based on COI, 16S, and 18S rDNA polymorphism. Mar Biotechnol 7: 306-317.
    • (2005) Mar Biotechnol , vol.7 , pp. 306-317
    • Klinbunga, S.1    Khamnamtong, B.2    Puanglarp, N.3    Jarayabhand, P.4    Yoosukh, W.5
  • 20
    • 33646832226 scopus 로고    scopus 로고
    • Species identification of Crassostrea and Ostrea Oysters by polymerase chain reaction amplification of the 5S rDNA gene
    • Cross I, Rebordinos L (2006) Species identification of Crassostrea and Ostrea Oysters by polymerase chain reaction amplification of the 5S rDNA gene. J AOAC Int 89: 144-148.
    • (2006) J AOAC Int , vol.89 , pp. 144-148
    • Cross, I.1    Rebordinos, L.2
  • 23
    • 77957292360 scopus 로고    scopus 로고
    • Molecular identification, phylogeny and geographic distribution of Brazilian mangrove oysters (Crassostrea)
    • De Melo AGC, Varela ES, Beasley CR, Schneider H, Sampaio I, et al. (2010) Molecular identification, phylogeny and geographic distribution of Brazilian mangrove oysters (Crassostrea). Genet Mol Biol 33: 564-572.
    • (2010) Genet Mol Biol , vol.33 , pp. 564-572
    • De Melo, A.G.C.1    Varela, E.S.2    Beasley, C.R.3    Schneider, H.4    Sampaio, I.5
  • 24
    • 0028507028 scopus 로고
    • Molecular phylogenetics of cupped oysters based on partial 28S rRNA gene sequences
    • Littlewood DTJ (1994) Molecular phylogenetics of cupped oysters based on partial 28S rRNA gene sequences. Mol Phylogenet Evol 3: 221-229.
    • (1994) Mol Phylogenet Evol , vol.3 , pp. 221-229
    • Littlewood, D.T.J.1
  • 25
    • 84907579444 scopus 로고    scopus 로고
    • Phylogenetic analysis of Thai oyster (Ostreidae) based on partial sequences of the mitochondrial 16S DNA gene
    • Bussarawit S, Gravlund P, Glenner H, Rasmussen AR (2006) Phylogenetic analysis of Thai oyster (Ostreidae) based on partial sequences of the mitochondrial 16S DNA gene. Phuket Mar Biol Cent Res Bull 67: 1-9.
    • (2006) Phuket Mar Biol Cent Res Bull , vol.67 , pp. 1-9
    • Bussarawit, S.1    Gravlund, P.2    Glenner, H.3    Rasmussen, A.R.4
  • 26
    • 80053899293 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the European flat oyster Ostrea edulis confirms Ostreidae classification
    • Danic-Tchaleu G, Heurtebise S, Morga B, Lapègue S (2011) Complete mitochondrial DNA sequence of the European flat oyster Ostrea edulis confirms Ostreidae classification. BMC Res Notes 4: 400.
    • (2011) BMC Res Notes , vol.4 , pp. 400
    • Danic-Tchaleu, G.1    Heurtebise, S.2    Morga, B.3    Lapègue, S.4
  • 27
    • 77954426349 scopus 로고    scopus 로고
    • The analysis of rRNA Sequence-Structure in phylogenetics: An application to the family Pectinidae (Mollusca, Bivalvia)
    • Salvi D, Bellavia G, Cervelli M, Mariottini P (2010) The analysis of rRNA Sequence-Structure in phylogenetics: an application to the family Pectinidae (Mollusca, Bivalvia). Mol Phylogenet Evol 56: 1059-1067.
    • (2010) Mol Phylogenet Evol , vol.56 , pp. 1059-1067
    • Salvi, D.1    Bellavia, G.2    Cervelli, M.3    Mariottini, P.4
  • 28
    • 84866177708 scopus 로고    scopus 로고
    • Molecular phylogenetics in 2D: ITS2 rRNA evolution and sequence-structure barcode from Veneridae to Bivalvia
    • Salvi D, Mariottini P (2012) Molecular phylogenetics in 2D: ITS2 rRNA evolution and sequence-structure barcode from Veneridae to Bivalvia. Mol Phylogenet Evol 65: 792-798.
    • (2012) Mol Phylogenet Evol , vol.65 , pp. 792-798
    • Salvi, D.1    Mariottini, P.2
  • 29
    • 76749097624 scopus 로고    scopus 로고
    • Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees
    • Keller A, Förster F, Müller T, Dandekar T, Schultz J, et al. (2010) Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees. Biol Direct 5: 4.
    • (2010) Biol Direct , vol.5 , pp. 4
    • Keller, A.1    Förster, F.2    Müller, T.3    Dandekar, T.4    Schultz, J.5
  • 31
    • 67349271005 scopus 로고    scopus 로고
    • ITS2 sequence-structure analysis in phylogenetics: A how-to manual for molecular systematics
    • Schultz J, Wolf M (2009) ITS2 sequence-structure analysis in phylogenetics: A how-to manual for molecular systematics. Mol Phylogenet Evol 52: 520-523.
    • (2009) Mol Phylogenet Evol , vol.52 , pp. 520-523
    • Schultz, J.1    Wolf, M.2
  • 32
    • 79951548848 scopus 로고    scopus 로고
    • Phangorn: Phylogenetic analysis in R
    • Schliep KP (2011) Phangorn: Phylogenetic analysis in R. Bioinformatics 27: 592-593.
    • (2011) Bioinformatics , vol.27 , pp. 592-593
    • Schliep, K.P.1
  • 33
    • 84903550772 scopus 로고    scopus 로고
    • ITS2, 18S, 16S or any other RNA-simply aligning sequences and their individual secondary structures simultaneously by an automatic approach
    • Wolf M, Koetschan C, Müller T (2014) ITS2, 18S, 16S or any other RNA-simply aligning sequences and their individual secondary structures simultaneously by an automatic approach. Gene 546 (2): 145-149.
    • (2014) Gene , vol.546 , Issue.2 , pp. 145-149
    • Wolf, M.1    Koetschan, C.2    Müller, T.3
  • 34
    • 0034988029 scopus 로고    scopus 로고
    • Contrasting morphological and molecular variation in Coralliophila meyendorffii (Muricidae, Coralliophilinae)
    • Oliverio M, Mariottini P (2001) Contrasting morphological and molecular variation in Coralliophila meyendorffii (Muricidae, Coralliophilinae). J Mollus Stud 67: 243-246.
    • (2001) J Mollus Stud , vol.67 , pp. 243-246
    • Oliverio, M.1    Mariottini, P.2
  • 36
    • 78650547821 scopus 로고    scopus 로고
    • Unusual conservation of mitochondrial gene order in Crassostrea oysters: Evidence for recent speciation in Asia
    • Ren J, Liu X, Jiang F, Guo X, Liu B (2010) Unusual conservation of mitochondrial gene order in Crassostrea oysters: evidence for recent speciation in Asia. BMC Evol Biol 10: 394.
    • (2010) BMC Evol Biol , vol.10 , pp. 394
    • Ren, J.1    Liu, X.2    Jiang, F.3    Guo, X.4    Liu, B.5
  • 37
    • 77949447172 scopus 로고    scopus 로고
    • RNAstructure: Software for RNA secondary structure prediction and analysis
    • Reuter JS, Mathews DH (2010) RNAstructure: software for RNA secondary structure prediction and analysis. BMC Bioinformatics 11: 129.
    • (2010) BMC Bioinformatics , vol.11 , pp. 129
    • Reuter, J.S.1    Mathews, D.H.2
  • 38
    • 0034025097 scopus 로고    scopus 로고
    • Phylogenetic analysis of molluscan mitochondrial LSU rDNA sequences and secondary structures
    • Lydeard C, Holznagel WE, Schnare MN, Gutell RR (2000) Phylogenetic analysis of molluscan mitochondrial LSU rDNA sequences and secondary structures. Mol Phylogenet Evol 15: 83-102.
    • (2000) Mol Phylogenet Evol , vol.15 , pp. 83-102
    • Lydeard, C.1    Holznagel, W.E.2    Schnare, M.N.3    Gutell, R.R.4
  • 39
    • 0036397304 scopus 로고    scopus 로고
    • ITS2 rRNA evolution and its congruence with the phylogeny of muricid neogastropods (Caenogastropoda, Muricoidea)
    • Oliverio M, Cervelli M, Mariottini P (2002) ITS2 rRNA evolution and its congruence with the phylogeny of muricid neogastropods (Caenogastropoda, Muricoidea). Mol Phylogenet Evol 25: 63-69.
    • (2002) Mol Phylogenet Evol , vol.25 , pp. 63-69
    • Oliverio, M.1    Cervelli, M.2    Mariottini, P.3
  • 40
    • 84859841345 scopus 로고    scopus 로고
    • ITS2 database IV: Interactive taxon sampling for internal transcribed spacer 2 based phylogenies
    • Koetschan C, Hackl T, Müller T, Wolf M, Forster F, et al. (2012) ITS2 database IV: interactive taxon sampling for internal transcribed spacer 2 based phylogenies. Mol Phylogenet Evol 63: 585-588.
    • (2012) Mol Phylogenet Evol , vol.63 , pp. 585-588
    • Koetschan, C.1    Hackl, T.2    Müller, T.3    Wolf, M.4    Forster, F.5
  • 41
    • 33751213606 scopus 로고    scopus 로고
    • 4SALE-a tool for synchronous RNA sequence and secondary structure alignment and editing
    • Seibel PN, Müller T, Dandekar T, Schultz J, Wolf M (2006) 4SALE-a tool for synchronous RNA sequence and secondary structure alignment and editing. BMC Bioinformatics 7: 11.
    • (2006) BMC Bioinformatics , vol.7 , pp. 11
    • Seibel, P.N.1    Müller, T.2    Dandekar, T.3    Schultz, J.4    Wolf, M.5
  • 42
    • 58049121167 scopus 로고    scopus 로고
    • Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE
    • Seibel PN, Müller T, Dandekar T, Wolf M (2008) Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE. BMC Res Notes 1: 91.
    • (2008) BMC Res Notes , vol.1 , pp. 91
    • Seibel, P.N.1    Müller, T.2    Dandekar, T.3    Wolf, M.4
  • 46
    • 84860109324 scopus 로고    scopus 로고
    • MrBayes3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space
    • Ronquist F, Teslenko M, Van der Mark P, Ayres DL, Darling A, et al. (2012) MrBayes3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol 61: 539-42.
    • (2012) Syst Biol , vol.61 , pp. 539-542
    • Ronquist, F.1    Teslenko, M.2    Van Der Mark, P.3    Ayres, D.L.4    Darling, A.5
  • 47
  • 49
    • 79952134006 scopus 로고    scopus 로고
    • Rambaut A (2012) FigTree v1.4. Available: http://tree.bio.ed.ac.uk/software/figtree/.
    • (2012) FigTree v1.4
    • Rambaut, A.1
  • 50
    • 84921308840 scopus 로고    scopus 로고
    • Does genbank provide a reliable dna barcode reference to identify small alien oysters invading the mediterranean sea?
    • in press
    • Crocetta F, Mariottini P, Salvi D, Oliverio M (2014) Does GenBank provide a reliable DNA barcode reference to identify small alien oysters invading the Mediterranean Sea? J Mar Biol Assoc UK (in press): doi: 10.1017/S0025315414001027.
    • (2014) J Mar Biol Assoc UK
    • Crocetta, F.1    Mariottini, P.2    Salvi, D.3    Oliverio, M.4
  • 51
    • 0023742397 scopus 로고
    • A compilation of large subunit RNA sequences presented in a structural format
    • Gutell RR, Fox GE (1988) A compilation of large subunit RNA sequences presented in a structural format. Nucleic Acids Res 16: 175-313.
    • (1988) Nucleic Acids Res , vol.16 , pp. 175-313
    • Gutell, R.R.1    Fox, G.E.2
  • 52
    • 0027225783 scopus 로고
    • Compilation of large subunit (23S and 23S-like) ribosomal RNA structures
    • Gutell RR, Gray MW, Schnare MN (1993) Compilation of large subunit (23S and 23S-like) ribosomal RNA structures. Nucleic Acids Res 21: 3055-3074.
    • (1993) Nucleic Acids Res , vol.21 , pp. 3055-3074
    • Gutell, R.R.1    Gray, M.W.2    Schnare, M.N.3
  • 53
    • 15444361843 scopus 로고    scopus 로고
    • A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota
    • Schultz J, Maisel S, Gerlach D, Müller T, Wolf M (2005) A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota. RNA 11(4): 361-364.
    • (2005) RNA , vol.11 , Issue.4 , pp. 361-364
    • Schultz, J.1    Maisel, S.2    Gerlach, D.3    Müller, T.4    Wolf, M.5
  • 54
    • 34250821680 scopus 로고    scopus 로고
    • Pan-eukaryote ITS2 homologies revealed by RNA secondary structure
    • Coleman AW (2007) Pan-eukaryote ITS2 homologies revealed by RNA secondary structure. Nucleic Acids Res 35: 3322-3329.
    • (2007) Nucleic Acids Res , vol.35 , pp. 3322-3329
    • Coleman, A.W.1
  • 55
    • 0033485458 scopus 로고    scopus 로고
    • Ribosomal internal transcribed spacer 2 (ITS2) exhibits a common core of secondary structure in vertebrates and yeast
    • Joseph N, Krauskopf E, Vera MI, Michot B (1999) Ribosomal internal transcribed spacer 2 (ITS2) exhibits a common core of secondary structure in vertebrates and yeast. Nucleic Acids Res 27: 4533-4540.
    • (1999) Nucleic Acids Res , vol.27 , pp. 4533-4540
    • Joseph, N.1    Krauskopf, E.2    Vera, M.I.3    Michot, B.4
  • 56
    • 0033151868 scopus 로고    scopus 로고
    • Evolutionary conserved structural features in the ITS2 of mammalian pre-rRNA and potential interactions with the snoRNA U8 detected by comparative analysis of new mouse sequences
    • Michot B, Joseph N, Mazan S, Bachellerie JP (1999) Evolutionary conserved structural features in the ITS2 of mammalian pre-rRNA and potential interactions with the snoRNA U8 detected by comparative analysis of new mouse sequences. Nucleic Acids Res 27: 2271-2282.
    • (1999) Nucleic Acids Res , vol.27 , pp. 2271-2282
    • Michot, B.1    Joseph, N.2    Mazan, S.3    Bachellerie, J.P.4
  • 57
    • 0000599609 scopus 로고
    • Oysters
    • Moore RC, Teichert C, editors Part N, Mollusca 6, Bivalvia. Vol 3. Kansas: Geological Society of America Inc and the University of Kansas Press.
    • Stenzel HB (1971) Oysters. In: Moore RC, Teichert C, editors. Treatise on Invertebrate Paleontology. Part N, Mollusca 6, Bivalvia. Vol 3. Kansas: Geological Society of America Inc and the University of Kansas Press. pp. 953-122.
    • (1971) Treatise on Invertebrate Paleontology , pp. 953-122
    • Stenzel, H.B.1
  • 58
    • 0002046410 scopus 로고    scopus 로고
    • Origin of the molluscan class bivalvia and a phylogeny of major groups
    • Johnston PA, Haggart JW, editors Calgary: University of Calgary Press.
    • Waller TR (1998) Origin of the molluscan class Bivalvia and a phylogeny of major groups. In: Johnston PA, Haggart JW, editors. Bivalves: An Eon of Evolution. Calgary: University of Calgary Press. pp. 1-45
    • (1998) Bivalves: An Eon of Evolution , pp. 1-45
    • Waller, T.R.1
  • 59
    • 0037767340 scopus 로고    scopus 로고
    • Phylogenetic analysis of the subclassis Pteriomorphia (Bivalvia) from mtDNA COI sequences
    • Matsumoto M (2003) Phylogenetic analysis of the subclassis Pteriomorphia (Bivalvia) from mtDNA COI sequences. Mol Phylogenet Evol 27: 429-440.
    • (2003) Mol Phylogenet Evol , vol.27 , pp. 429-440
    • Matsumoto, M.1
  • 60
    • 0029175765 scopus 로고
    • Differences in mitochondrial 16S ribosomal gene sequences allow discrimination among American [Crassostrea virginica (Gmelin)] and Asian [C. Gigas (Thunberg) C. Ariakensis Wakiya] oyster species
    • O' Foighil D, Gaffney PM, Hilbish TJ (1995) Differences in mitochondrial 16S ribosomal gene sequences allow discrimination among American [Crassostrea virginica (Gmelin)] and Asian [C. gigas (Thunberg) C. ariakensis Wakiya] oyster species. J Exp Mar Biol Ecol 192: 211-220.
    • (1995) J Exp Mar Biol Ecol , vol.192 , pp. 211-220
    • Foighil D.O.'.1    Gaffney, P.M.2    Hilbish, T.J.3
  • 61
    • 0036018247 scopus 로고    scopus 로고
    • Trans-Atlantic distribution of a mangrove oyster species revealed by 16S mtDNA and karyological analysis
    • Lapègue S, Boutet I, Leitão A, Heurtebise S, Garcia P, et al. (2002) Trans-Atlantic distribution of a mangrove oyster species revealed by 16S mtDNA and karyological analysis. Biol Bull 202: 232-242.
    • (2002) Biol Bull , vol.202 , pp. 232-242
    • Lapègue, S.1    Boutet, I.2    Leitão, A.3    Heurtebise, S.4    Garcia, P.5
  • 62
    • 1242321379 scopus 로고    scopus 로고
    • Differences in the rDNA-bearing chromosome divide the asian-pacific and atlantic species of crassostrea (bivalvia, mollusca)
    • Wang Y, Xus Z, Guo X (2004) Differences in the rDNA-bearing Chromosome divide the Asian-Pacific and Atlantic species of Crassostrea (Bivalvia, Mollusca). Biol Bull 206, 46-54.
    • (2004) Biol Bull , vol.206 , pp. 46-54
    • Wang, Y.1    Xus, Z.2    Guo, X.3
  • 63
    • 84899480945 scopus 로고    scopus 로고
    • Revision of genus crassostrea (bivalvia: Ostreidae) of brazil
    • Amaral VSD, Simone LRL (2014) Revision of genus Crassostrea (Bivalvia: Ostreidae) of Brazil. J Mar Biol Assoc UK 94: 811-836.
    • (2014) J Mar Biol Assoc UK , vol.94 , pp. 811-836
    • Amaral, V.S.D.1    Simone, L.R.L.2
  • 65
    • 0036553034 scopus 로고    scopus 로고
    • On the use of genetic divergence for identifying species
    • Ferguson JWH (2002) On the use of genetic divergence for identifying species. Biol J Linn Soc 75: 509-516.
    • (2002) Biol J Linn Soc , vol.75 , pp. 509-516
    • Ferguson, J.W.H.1
  • 66
    • 0042697667 scopus 로고    scopus 로고
    • The shapes of neutral gene genealogies in two species: Probabilities of monophyly, paraphyly, and polyphyly in a coalescent model
    • Rosenberg R (2003) The shapes of neutral gene genealogies in two species: probabilities of monophyly, paraphyly, and polyphyly in a coalescent model. Evolution 57: 1465-1477.
    • (2003) Evolution , vol.57 , pp. 1465-1477
    • Rosenberg, R.1
  • 67
    • 22044434823 scopus 로고    scopus 로고
    • Towards integrative taxonomy
    • Dayrat B (2005) Towards integrative taxonomy. Biol J Linn Soc 85: 407-415.
    • (2005) Biol J Linn Soc , vol.85 , pp. 407-415
    • Dayrat, B.1
  • 68
    • 31344458132 scopus 로고    scopus 로고
    • The unholy trinity: Taxonomy, species delimitation and DNA barcoding
    • De Salle R, Egan MG, Siddall M (2005) The unholy trinity: taxonomy, species delimitation and DNA barcoding. Phil Trans R Soc B 360: 1905-1916.
    • (2005) Phil Trans R Soc B , vol.360 , pp. 1905-1916
    • De Salle, R.1    Egan, M.G.2    Siddall, M.3
  • 70
  • 71
    • 76049119307 scopus 로고    scopus 로고
    • ITS2 secondary structure improves phylogeny estimation in a radiation of blue butterflies of the subgenus Agrodiaetus (Lepidoptera: Lycaenidae: Polyommatus)
    • Wieners M, Keller A, Wolf M (2009) ITS2 secondary structure improves phylogeny estimation in a radiation of blue butterflies of the subgenus Agrodiaetus (Lepidoptera: Lycaenidae: Polyommatus). BMC Evol Biol 9: 300.
    • (2009) BMC Evol Biol , vol.9 , pp. 300
    • Wieners, M.1    Keller, A.2    Wolf, M.3
  • 72
    • 79951837282 scopus 로고    scopus 로고
    • Internal transcribed spacer 2 (nu its2 rrna) sequence-structure phylogenetics: Towards an automated reconstruction of the green algal tree of life
    • Buchheim MA, Keller A, Koetschan C, Förster F, Merget B, et al. (2011) Internal Transcribed Spacer 2 (nu ITS2 rRNA) Sequence-Structure Phylogenetics: Towards an Automated Reconstruction of the Green Algal Tree of Life. PLoS One 6(2): e16931.
    • (2011) PLoS One , vol.6 , Issue.2 , pp. e16931
    • Buchheim, M.A.1    Keller, A.2    Koetschan, C.3    Förster, F.4    Merget, B.5
  • 73
    • 84868210014 scopus 로고    scopus 로고
    • Y' scenedesmus (chlorophyta, chlorophyceae): The internal transcribed spacer 2 rrna secondary structure re-revisited
    • Markert SM, Müller T, Koetschan C, Friedl T, Wolf M (2012) 'Y' Scenedesmus (Chlorophyta, Chlorophyceae): the internal transcribed spacer 2 rRNA secondary structure re-revisited. Plant Biol 14: 987-996.
    • (2012) Plant Biol , vol.14 , pp. 987-996
    • Markert, S.M.1    Müller, T.2    Koetschan, C.3    Friedl, T.4    Wolf, M.5
  • 74
    • 0023822631 scopus 로고
    • Relationships between gene trees and species trees
    • Pamilo P, Nei M (1988) Relationships between gene trees and species trees. Mol Biol Evol 5: 568-583.
    • (1988) Mol Biol Evol , vol.5 , pp. 568-583
    • Pamilo, P.1    Nei, M.2
  • 75
    • 0031504952 scopus 로고    scopus 로고
    • Gene trees in species trees
    • Maddison WP (1997) Gene trees in species trees. Syst Biol 46: 523-536.
    • (1997) Syst Biol , vol.46 , pp. 523-536
    • Maddison, W.P.1
  • 76
    • 33646928341 scopus 로고    scopus 로고
    • Discordance of species trees with their most likely gene trees
    • Degnan JH, Rosenberg NA (2006) Discordance of species trees with their most likely gene trees. PLoS Genet 2(5): e68.
    • (2006) PLoS Genet , vol.2 , Issue.5 , pp. e68
    • Degnan, J.H.1    Rosenberg, N.A.2
  • 77
    • 77249086587 scopus 로고    scopus 로고
    • Bayesian inference of species trees from multilocus data
    • Heled J, Drummond AJ (2010) Bayesian inference of species trees from multilocus data. Mol Biol Evol 27: 570-580.
    • (2010) Mol Biol Evol , vol.27 , pp. 570-580
    • Heled, J.1    Drummond, A.J.2
  • 78
    • 84893740882 scopus 로고    scopus 로고
    • Phylogenetic model choice: Justifying a species tree or concatenation analysis
    • McVay JD, Carstens BC (2013) Phylogenetic Model Choice: Justifying a Species Tree or Concatenation Analysis. J Phylogen Evolution Biol 1: 3.
    • (2013) J Phylogen Evolution Biol , vol.1 , pp. 3
    • McVay, J.D.1    Carstens, B.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.