-
1
-
-
36049048325
-
Evolution of enzymatic activities in the enolase superfamily: D -Mannonate dehydratase from Novosphingobium aromaticivorans
-
Rakus, J. F., Fedorov, A. A., Fedorov, E. V., Glasner, M. E., Vick, J. E., Babbitt, P. C., Almo, S. C., and Gerlt, J. A. (2007) Evolution of enzymatic activities in the enolase superfamily: d -Mannonate dehydratase from Novosphingobium aromaticivorans Biochemistry 46 (45) 12896-12908
-
(2007)
Biochemistry
, vol.46
, Issue.45
, pp. 12896-12908
-
-
Rakus, J.F.1
Fedorov, A.A.2
Fedorov, E.V.3
Glasner, M.E.4
Vick, J.E.5
Babbitt, P.C.6
Almo, S.C.7
Gerlt, J.A.8
-
2
-
-
33845401627
-
Evolution of enzymatic activities in the enolase superfamily: L -Fuconate dehydratase from Xanthomonas campestris
-
Yew, W. S., Fedorov, A. A., Fedorov, E. V., Rakus, J. F., Pierce, R. W., Almo, S. C., and Gerlt, J. A. (2006) Evolution of enzymatic activities in the enolase superfamily: l -Fuconate dehydratase from Xanthomonas campestris Biochemistry 45, 14582-14597
-
(2006)
Biochemistry
, vol.45
, pp. 14582-14597
-
-
Yew, W.S.1
Fedorov, A.A.2
Fedorov, E.V.3
Rakus, J.F.4
Pierce, R.W.5
Almo, S.C.6
Gerlt, J.A.7
-
3
-
-
0034712668
-
Evolution of enzymatic activities in the enolase superfamily: Crystallographic and mutagenesis studies of the reaction catalyzed by d -glucarate dehydratase from Escherichia coli
-
Gulick, A. M., Hubbard, B. K., Gerlt, J. A., and Rayment, I. (2000) Evolution of enzymatic activities in the enolase superfamily: Crystallographic and mutagenesis studies of the reaction catalyzed by d -glucarate dehydratase from Escherichia coli Biochemistry 39, 4590-4602
-
(2000)
Biochemistry
, vol.39
, pp. 4590-4602
-
-
Gulick, A.M.1
Hubbard, B.K.2
Gerlt, J.A.3
Rayment, I.4
-
4
-
-
0029651191
-
A functionally diverse enzyme superfamily that abstracts the α protons of carboxylic acids
-
Babbitt, P. C., Mrachko, G. T., Hasson, M. S., Huisman, G. W., Kolter, R., Ringe, D., Petsko, G. A., Kenyon, G. L., and Gerlt, J. A. (1995) A functionally diverse enzyme superfamily that abstracts the α protons of carboxylic acids Science 267, 1159-1161
-
(1995)
Science
, vol.267
, pp. 1159-1161
-
-
Babbitt, P.C.1
Mrachko, G.T.2
Hasson, M.S.3
Huisman, G.W.4
Kolter, R.5
Ringe, D.6
Petsko, G.A.7
Kenyon, G.L.8
Gerlt, J.A.9
-
5
-
-
0034923923
-
Divergent evolution of enzymatic function: Mechanistically diverse superfamilies and functionally distinct suprafamilies
-
Gerlt, J. A. and Babbitt, P. C. (2001) Divergent evolution of enzymatic function: Mechanistically diverse superfamilies and functionally distinct suprafamilies Annu. Rev. Biochem. 70, 209-246
-
(2001)
Annu. Rev. Biochem.
, vol.70
, pp. 209-246
-
-
Gerlt, J.A.1
Babbitt, P.C.2
-
6
-
-
9744279773
-
Divergent evolution in the enolase superfamily: The interplay of mechanism and specificity
-
Gerlt, J. A., Babbit, P. C., and Rayment, I. (2005) Divergent evolution in the enolase superfamily: The interplay of mechanism and specificity Arch. Biochem. Biophys. 433, 59-70
-
(2005)
Arch. Biochem. Biophys.
, vol.433
, pp. 59-70
-
-
Gerlt, J.A.1
Babbit, P.C.2
Rayment, I.3
-
7
-
-
84899632710
-
Discovery of function in the enolase superfamily: D -Mannonate and d -gluconate dehydratases in the d -mannonate dehydratase subgroup
-
Wichelecki, D. J., Balthazor, B. M., Chau, A. A., Vetting, M. W., Fedorov, A. A., Fedorov, E. V., Lukk, T., Patskovsky, Y. V., Stead, M. B., Hillerich, B. S., Seidel, R. D., Almo, S. C., and Gerlt, J. A. (2014) Discovery of function in the enolase superfamily: d -Mannonate and d -gluconate dehydratases in the d -mannonate dehydratase subgroup Biochemistry 53, 2722-2731
-
(2014)
Biochemistry
, vol.53
, pp. 2722-2731
-
-
Wichelecki, D.J.1
Balthazor, B.M.2
Chau, A.A.3
Vetting, M.W.4
Fedorov, A.A.5
Fedorov, E.V.6
Lukk, T.7
Patskovsky, Y.V.8
Stead, M.B.9
Hillerich, B.S.10
Seidel, R.D.11
Almo, S.C.12
Gerlt, J.A.13
-
8
-
-
84903734297
-
Identification of the physiological role of a high efficiency enolase superfamily member mannonate dehydratase in Caulobacter crescentus NA1000
-
Wichelecki, D. J., Graff, D. C., Al-Obaidi, N., Almo, S. C., and Gerlt, J. A. (2014) Identification of the physiological role of a high efficiency enolase superfamily member mannonate dehydratase in Caulobacter crescentus NA1000 Biochemistry 53, 4087-4089
-
(2014)
Biochemistry
, vol.53
, pp. 4087-4089
-
-
Wichelecki, D.J.1
Graff, D.C.2
Al-Obaidi, N.3
Almo, S.C.4
Gerlt, J.A.5
-
9
-
-
0034916345
-
Chromohalobacter salexigens sp. Nov., a moderately halophilic species that includes Halomonas elongata DSM 3043 and ATCC 33174
-
Arahal, D. R., Garcia, M. T., Vargas, C., Canovas, D., Nieto, J. J., and Ventosa, A. (2001) Chromohalobacter salexigens sp. nov., a moderately halophilic species that includes Halomonas elongata DSM 3043 and ATCC 33174 Int. J. Syst. Evol. Microbiol. 51, 1457-1462
-
(2001)
Int. J. Syst. Evol. Microbiol.
, vol.51
, pp. 1457-1462
-
-
Arahal, D.R.1
Garcia, M.T.2
Vargas, C.3
Canovas, D.4
Nieto, J.J.5
Ventosa, A.6
-
10
-
-
9244243641
-
Two Outer Membrane Proteins are Required for Maximal Type i Secretion of the Caulobacter crescentus S-Layer Protein
-
Toporowski, M. C., Nomellini, J. F., Awram, P., and Smit, J. (2004) Two Outer Membrane Proteins are Required for Maximal Type I Secretion of the Caulobacter crescentus S-Layer Protein J. Bacteriol. 186, 8000-8009
-
(2004)
J. Bacteriol.
, vol.186
, pp. 8000-8009
-
-
Toporowski, M.C.1
Nomellini, J.F.2
Awram, P.3
Smit, J.4
-
11
-
-
1342325451
-
Transcriptional Profiling of Caulobacter crescentus during Growth on Complex and Minimal Media
-
Hottes, A. K., Meewan, M., Yang, D., Arana, N., Romero, P., McAdams, H. H., and Stephens, C. (2003) Transcriptional Profiling of Caulobacter crescentus during Growth on Complex and Minimal Media J. Bacteriol. 186, 1448-1461
-
(2003)
J. Bacteriol.
, vol.186
, pp. 1448-1461
-
-
Hottes, A.K.1
Meewan, M.2
Yang, D.3
Arana, N.4
Romero, P.5
McAdams, H.H.6
Stephens, C.7
-
12
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko, K. A. and Wanner, B. L. (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products Proc. Natl. Acad. Sci. U.S.A. 97, 6640-6645
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
13
-
-
0345039454
-
Enzymes of glucuronic and galacturonic acid metabolism in bacteria
-
Ashwel, G. (1962) Enzymes of glucuronic and galacturonic acid metabolism in bacteria Methods Enzymol. 5, 190-208
-
(1962)
Methods Enzymol.
, vol.5
, pp. 190-208
-
-
Ashwel, G.1
-
14
-
-
69949111845
-
Crystal Structures of Streptococcus suis Mannonate Dehydratase (ManD) and Its Complex with Substrate: Genetic and Biochemical Evidence for a Catalytic Mechanism
-
Zhang, Q., Gao, F., Peng, H., Cheng, H., Liu, Y., Tang, J., Thompson, J., Wei, G., Zhang, J., Du, Y., Yan, J., and Gao, G. F. (2009) Crystal Structures of Streptococcus suis Mannonate Dehydratase (ManD) and Its Complex with Substrate: Genetic and Biochemical Evidence for a Catalytic Mechanism J. Bacteriol. 191, 5832-5837
-
(2009)
J. Bacteriol.
, vol.191
, pp. 5832-5837
-
-
Zhang, Q.1
Gao, F.2
Peng, H.3
Cheng, H.4
Liu, Y.5
Tang, J.6
Thompson, J.7
Wei, G.8
Zhang, J.9
Du, Y.10
Yan, J.11
Gao, G.F.12
-
15
-
-
0014570787
-
Hexuronic acid dehydrogenase of Agrobacterium tumefaciens
-
Chang, Y. F. and Feingold, D. S. (1969) Hexuronic acid dehydrogenase of Agrobacterium tumefaciens J. Bacteriol. 99, 667-673
-
(1969)
J. Bacteriol.
, vol.99
, pp. 667-673
-
-
Chang, Y.F.1
Feingold, D.S.2
-
16
-
-
0017251476
-
Uronic acid dehydrogenase from Pseudomonas syringae. Purification and properties
-
Wagner, G. and Hollmann, S. (1976) Uronic acid dehydrogenase from Pseudomonas syringae. Purification and properties Eur. J. Biochem. 61, 589-596
-
(1976)
Eur. J. Biochem.
, vol.61
, pp. 589-596
-
-
Wagner, G.1
Hollmann, S.2
-
17
-
-
0011195193
-
Bacterial conversion of d -glucarate to glycerate and pyruvate
-
Blumenthal, H. J. and Fish, D. C. (1963) Bacterial conversion of d -glucarate to glycerate and pyruvate Biochem. Biophys. Res. Commun. 11, 239-243
-
(1963)
Biochem. Biophys. Res. Commun.
, vol.11
, pp. 239-243
-
-
Blumenthal, H.J.1
Fish, D.C.2
-
18
-
-
84893704201
-
Galactaro δ-lactone isomerase: Lactone isomerization by a member of the amidohydrolase superfamily
-
Bouvier, J. T., Groninger-Poe, F. P., Vetting, M., Almo, S. C., and Gerlt, J. A. (2014) Galactaro δ-lactone isomerase: Lactone isomerization by a member of the amidohydrolase superfamily Biochemistry 53, 614-616
-
(2014)
Biochemistry
, vol.53
, pp. 614-616
-
-
Bouvier, J.T.1
Groninger-Poe, F.P.2
Vetting, M.3
Almo, S.C.4
Gerlt, J.A.5
-
19
-
-
84861209586
-
Characterization of a novel Agrobacterium tumefaciens galactarolactone cycloisomerase enzyme for direct conversion of d -galactarolactone to 3-deoxy-2-keto- l -threo-hexarate
-
Andberg, M., Maaheimo, H., Boer, H., Penttilä, M., Koivula, A., and Richard, P. (2012) Characterization of a novel Agrobacterium tumefaciens galactarolactone cycloisomerase enzyme for direct conversion of d -galactarolactone to 3-deoxy-2-keto- l -threo-hexarate J. Biol. Chem. 287, 17662-17671
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 17662-17671
-
-
Andberg, M.1
Maaheimo, H.2
Boer, H.3
Penttilä, M.4
Koivula, A.5
Richard, P.6
-
20
-
-
0019326887
-
The pathway for l -gulonate catabolism in Escherichia coli K-12 and Salmonella typhimurium LT-2
-
Cooper, R. A. (1980) The pathway for l -gulonate catabolism in Escherichia coli K-12 and Salmonella typhimurium LT-2 FEBS Lett. 115, 63-67
-
(1980)
FEBS Lett.
, vol.115
, pp. 63-67
-
-
Cooper, R.A.1
-
21
-
-
0032447867
-
Sequence analysis of the GntII (subsidiary) system for gluconate metabolism reveals a novel pathway for l -idonic acid catabolism in Escherichia coli
-
Bausch, C., Peekhaus, N., Utz, C., Blais, T., Murray, E., Lowary, T., and Conway, T. (1998) Sequence analysis of the GntII (subsidiary) system for gluconate metabolism reveals a novel pathway for l -idonic acid catabolism in Escherichia coli J. Bacteriol. 180, 3704-3710
-
(1998)
J. Bacteriol.
, vol.180
, pp. 3704-3710
-
-
Bausch, C.1
Peekhaus, N.2
Utz, C.3
Blais, T.4
Murray, E.5
Lowary, T.6
Conway, T.7
-
22
-
-
0017272554
-
Enzyme recruitment in evolution of new function
-
Jenson, R. A. (1976) Enzyme recruitment in evolution of new function Annu. Rev. Microbiol. 30, 409-425
-
(1976)
Annu. Rev. Microbiol.
, vol.30
, pp. 409-425
-
-
Jenson, R.A.1
-
23
-
-
36749020130
-
Protein engineers turned evolutionists
-
Peisajovich, S. G. and Tawfik, D. S. (2007) Protein engineers turned evolutionists Nat. Methods 4, 991-994
-
(2007)
Nat. Methods
, vol.4
, pp. 991-994
-
-
Peisajovich, S.G.1
Tawfik, D.S.2
|