-
1
-
-
78751648558
-
Longitudinal characterization of antimicrobial resistance genes in feces shed from cattle fed different subtherapeutic antibiotics
-
Alexander T.W., Yanke J.L., Reuter T., Topp E., Read R.R., Selinger B.L., McAllister T.A. Longitudinal characterization of antimicrobial resistance genes in feces shed from cattle fed different subtherapeutic antibiotics. BMC Microbiol. 2011, 11:19.
-
(2011)
BMC Microbiol.
, vol.11
, pp. 19
-
-
Alexander, T.W.1
Yanke, J.L.2
Reuter, T.3
Topp, E.4
Read, R.R.5
Selinger, B.L.6
McAllister, T.A.7
-
2
-
-
77952441809
-
Comparison of DNA extraction kits for PCR-DGGE analysis of human intestinal microbial communities from fecal specimens
-
Ariefdjohan M.W., Savaiano D.A., Nakatsu C.H. Comparison of DNA extraction kits for PCR-DGGE analysis of human intestinal microbial communities from fecal specimens. Nutr. J. 2010, 9:23.
-
(2010)
Nutr. J.
, vol.9
, pp. 23
-
-
Ariefdjohan, M.W.1
Savaiano, D.A.2
Nakatsu, C.H.3
-
3
-
-
84903823194
-
Demonstrating plasmid-based horizontal gene transfer in complex environmental matrices: a practical approach for a critical review
-
Bellanger X., Guilloteau H., Bonot S., Merlin C. Demonstrating plasmid-based horizontal gene transfer in complex environmental matrices: a practical approach for a critical review. Sci. Total Environ. 2014, 493C:872-882.
-
(2014)
Sci. Total Environ.
, vol.493 C
, pp. 872-882
-
-
Bellanger, X.1
Guilloteau, H.2
Bonot, S.3
Merlin, C.4
-
4
-
-
76149123916
-
Monitoring the dissemination of the broad-host-range plasmid pB10 in sediment microcosms by quantitative PCR
-
Bonot S., Merlin C. Monitoring the dissemination of the broad-host-range plasmid pB10 in sediment microcosms by quantitative PCR. Appl. Environ. Microbiol. 2010, 76:378-382.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 378-382
-
-
Bonot, S.1
Merlin, C.2
-
5
-
-
77955553975
-
Improving the recovery of qPCR-grade DNA from sludge and sediment
-
Bonot S., Courtois S., Block J.-C., Merlin C. Improving the recovery of qPCR-grade DNA from sludge and sediment. Appl. Microbiol. Biotechnol. 2010, 87:2303-2311.
-
(2010)
Appl. Microbiol. Biotechnol.
, vol.87
, pp. 2303-2311
-
-
Bonot, S.1
Courtois, S.2
Block, J.-C.3
Merlin, C.4
-
6
-
-
84878869719
-
A comparison of the efficiency of five different commercial DNA extraction kits for extraction of DNA from faecal samples
-
Claassen S., du Toit E., Kaba M., Moodley C., Zar H.J., Nicol M.P. A comparison of the efficiency of five different commercial DNA extraction kits for extraction of DNA from faecal samples. J. Microbiol. Methods 2013, 94:103-110.
-
(2013)
J. Microbiol. Methods
, vol.94
, pp. 103-110
-
-
Claassen, S.1
du Toit, E.2
Kaba, M.3
Moodley, C.4
Zar, H.J.5
Nicol, M.P.6
-
7
-
-
47649114479
-
Comparison of automated nucleic acid extraction methods with manual extraction
-
Dundas N., Leos N.K., Mitui M., Revell P., Rogers B.B. Comparison of automated nucleic acid extraction methods with manual extraction. J. Mol. Diagn. 2008, 10:311-316.
-
(2008)
J. Mol. Diagn.
, vol.10
, pp. 311-316
-
-
Dundas, N.1
Leos, N.K.2
Mitui, M.3
Revell, P.4
Rogers, B.B.5
-
8
-
-
0024444791
-
Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA
-
Edwards U., Rogall T., Blocker H., Emde M., Bottger E.C. Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res. 1989, 17:7843-7853.
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 7843-7853
-
-
Edwards, U.1
Rogall, T.2
Blocker, H.3
Emde, M.4
Bottger, E.C.5
-
9
-
-
84885080349
-
Bacterial community mapping of the mouse gastrointestinal tract
-
Gu S., Chen D., Zhang J.N., Lv X., Wang K., Duan L.P., Nie Y., Wu X.L. Bacterial community mapping of the mouse gastrointestinal tract. PLoS One 2013, 8:e74957.
-
(2013)
PLoS One
, vol.8
-
-
Gu, S.1
Chen, D.2
Zhang, J.N.3
Lv, X.4
Wang, K.5
Duan, L.P.6
Nie, Y.7
Wu, X.L.8
-
10
-
-
84877765843
-
Biases during DNA extraction of activated sludge samples revealed by high throughput sequencing
-
Guo F., Zhang T. Biases during DNA extraction of activated sludge samples revealed by high throughput sequencing. Appl. Microbiol. Biotechnol. 2013, 97:4607-4616.
-
(2013)
Appl. Microbiol. Biotechnol.
, vol.97
, pp. 4607-4616
-
-
Guo, F.1
Zhang, T.2
-
11
-
-
54249110955
-
Development of a real-time PCR method for Firmicutes and Bacteroidetes in faeces and its application to quantify intestinal population of obese and lean pigs
-
Guo X., Xia X., Tang R., Zhou J., Zhao H., Wang K. Development of a real-time PCR method for Firmicutes and Bacteroidetes in faeces and its application to quantify intestinal population of obese and lean pigs. Lett. Appl. Microbiol. 2008, 47:367-373.
-
(2008)
Lett. Appl. Microbiol.
, vol.47
, pp. 367-373
-
-
Guo, X.1
Xia, X.2
Tang, R.3
Zhou, J.4
Zhao, H.5
Wang, K.6
-
12
-
-
84856706646
-
Molecular methods to measure intestinal bacteria: a review
-
Inglis G.D., Thomas M.C., Thomas D.K., Kalmokoff M.L., Brooks S.P., Selinger L.B. Molecular methods to measure intestinal bacteria: a review. J. AOAC Int. 2012, 95:5-23.
-
(2012)
J. AOAC Int.
, vol.95
, pp. 5-23
-
-
Inglis, G.D.1
Thomas, M.C.2
Thomas, D.K.3
Kalmokoff, M.L.4
Brooks, S.P.5
Selinger, L.B.6
-
13
-
-
0038066208
-
Evaluation of QIAamp® DNA Stool Mini Kit for ecological studies of gut microbiota
-
Li M., Gong J., Cottrill M., Yu H., de Lange C., Burton J., Topp E. Evaluation of QIAamp® DNA Stool Mini Kit for ecological studies of gut microbiota. J. Microbiol. Methods 2003, 54:13-20.
-
(2003)
J. Microbiol. Methods
, vol.54
, pp. 13-20
-
-
Li, M.1
Gong, J.2
Cottrill, M.3
Yu, H.4
de Lange, C.5
Burton, J.6
Topp, E.7
-
14
-
-
84856061103
-
The currently used commercial DNA-extraction methods give different results of clostridial and actinobacterial populations derived from human fecal samples
-
Maukonen J., Simões C., Saarela M. The currently used commercial DNA-extraction methods give different results of clostridial and actinobacterial populations derived from human fecal samples. FEMS Microbiol. Ecol. 2012, 79:697-708.
-
(2012)
FEMS Microbiol. Ecol.
, vol.79
, pp. 697-708
-
-
Maukonen, J.1
Simões, C.2
Saarela, M.3
-
15
-
-
0030909382
-
Complex polysaccharides as PCR inhibitors in feces: Helicobacter pylori model
-
Monteiro L., Bonnemaison D., Vekris A., Petry K.G., Bonnet J., Vidal R., Cabrita J., Mégraud F. Complex polysaccharides as PCR inhibitors in feces: Helicobacter pylori model. J. Clin. Microbiol. 1997, 35:995-998.
-
(1997)
J. Clin. Microbiol.
, vol.35
, pp. 995-998
-
-
Monteiro, L.1
Bonnemaison, D.2
Vekris, A.3
Petry, K.G.4
Bonnet, J.5
Vidal, R.6
Cabrita, J.7
Mégraud, F.8
-
16
-
-
79953741042
-
Development of multiplex PCR assays based on the 16S-23S rRNA internal transcribed spacer for the detection of clinically relevant nontuberculous mycobacteria
-
Ngan G.J., Ng L.M., Jureen R., Lin R.T., Teo J.W. Development of multiplex PCR assays based on the 16S-23S rRNA internal transcribed spacer for the detection of clinically relevant nontuberculous mycobacteria. Lett. Appl. Microbiol. 2011, 52:546-554.
-
(2011)
Lett. Appl. Microbiol.
, vol.52
, pp. 546-554
-
-
Ngan, G.J.1
Ng, L.M.2
Jureen, R.3
Lin, R.T.4
Teo, J.W.5
-
17
-
-
77957885233
-
Semi-automated extraction of microbial DNA from feces for qPCR and phylogenetic microarray analysis
-
Nylund L., Heilig H.G., Salminen S., de Vos W.M., Satokari R. Semi-automated extraction of microbial DNA from feces for qPCR and phylogenetic microarray analysis. J. Microbiol. Methods 2010, 83:231-235.
-
(2010)
J. Microbiol. Methods
, vol.83
, pp. 231-235
-
-
Nylund, L.1
Heilig, H.G.2
Salminen, S.3
de Vos, W.M.4
Satokari, R.5
-
18
-
-
84870299896
-
DNA extract characterization process for microbial detection methods development and validation
-
Olson N.D., Morrow J.B. DNA extract characterization process for microbial detection methods development and validation. BMC Res. Notes 2012, 5:668.
-
(2012)
BMC Res. Notes
, vol.5
, pp. 668
-
-
Olson, N.D.1
Morrow, J.B.2
-
19
-
-
84865306386
-
Faecal and caecal microbiota profiles of mice do not cluster in the same way
-
Pang W., Vogensen F.K., Nielsen D.S., Hansen A.K. Faecal and caecal microbiota profiles of mice do not cluster in the same way. Lab. Anim. 2012, 46:231-236.
-
(2012)
Lab. Anim.
, vol.46
, pp. 231-236
-
-
Pang, W.1
Vogensen, F.K.2
Nielsen, D.S.3
Hansen, A.K.4
-
21
-
-
79952907122
-
Pathogen quantitation in complex matrices: a multi-operator comparison of DNA extraction methods with a novel assessment of PCR inhibition
-
Pontiroli A., Travis E.R., Sweeney F.P., Porter D., Gaze W.H., Mason S., Hibberd V., Holden J., Courtenay O., Wellington E.M. Pathogen quantitation in complex matrices: a multi-operator comparison of DNA extraction methods with a novel assessment of PCR inhibition. PLoS One 2011, 6:e17916.
-
(2011)
PLoS One
, vol.6
-
-
Pontiroli, A.1
Travis, E.R.2
Sweeney, F.P.3
Porter, D.4
Gaze, W.H.5
Mason, S.6
Hibberd, V.7
Holden, J.8
Courtenay, O.9
Wellington, E.M.10
-
22
-
-
0030741056
-
An improved method for purifying DNA from soil for polymerase chain reaction amplification and molecular ecology applications
-
Porteous L.A., Seidler R.J., Watrud L.S. An improved method for purifying DNA from soil for polymerase chain reaction amplification and molecular ecology applications. Mol. Ecol. 1997, 6:787-791.
-
(1997)
Mol. Ecol.
, vol.6
, pp. 787-791
-
-
Porteous, L.A.1
Seidler, R.J.2
Watrud, L.S.3
-
23
-
-
75749133597
-
Bacteria associated with immunoregulatory cells in mice
-
Presley L.L., Wei B., Braun J., Borneman J. Bacteria associated with immunoregulatory cells in mice. Appl. Environ. Microbiol. 2010, 76:936-941.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 936-941
-
-
Presley, L.L.1
Wei, B.2
Braun, J.3
Borneman, J.4
-
24
-
-
77950683587
-
DNA extraction from bovine faeces: current status and future trends
-
Rapp D. DNA extraction from bovine faeces: current status and future trends. J. Appl. Microbiol. 2010, 108:1485-1493.
-
(2010)
J. Appl. Microbiol.
, vol.108
, pp. 1485-1493
-
-
Rapp, D.1
-
25
-
-
77951977802
-
Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis
-
Salonen A., Nikkilä J., Jalanka-Tuovinen J., Immonen O., Rajilić-Stojanović M., Kekkonen R.A., Palva A., de Vos W.M. Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis. J. Microbiol. Methods 2010, 81:127-134.
-
(2010)
J. Microbiol. Methods
, vol.81
, pp. 127-134
-
-
Salonen, A.1
Nikkilä, J.2
Jalanka-Tuovinen, J.3
Immonen, O.4
Rajilić-Stojanović, M.5
Kekkonen, R.A.6
Palva, A.7
de Vos, W.M.8
-
26
-
-
17944402895
-
The 64 508bp IncP-1beta antibiotic multiresistance plasmid pB10 isolated from a waste-water treatment plant provides evidence for recombination between members of different branches of the IncP-1beta group
-
Schlüter A., Heuer H., Szczepanowski R., Forney L.J., Thomas C.M., Pühler A., Top E.M. The 64 508bp IncP-1beta antibiotic multiresistance plasmid pB10 isolated from a waste-water treatment plant provides evidence for recombination between members of different branches of the IncP-1beta group. Microbiology 2003, 149:3139-3153.
-
(2003)
Microbiology
, vol.149
, pp. 3139-3153
-
-
Schlüter, A.1
Heuer, H.2
Szczepanowski, R.3
Forney, L.J.4
Thomas, C.M.5
Pühler, A.6
Top, E.M.7
-
27
-
-
33846288887
-
Comparison of DNA extraction methods for analysis of turkey cecal microbiota
-
Scupham A.J., Jones J.A., Wesley I.V. Comparison of DNA extraction methods for analysis of turkey cecal microbiota. J. Appl. Microbiol. 2007, 102:401-409.
-
(2007)
J. Appl. Microbiol.
, vol.102
, pp. 401-409
-
-
Scupham, A.J.1
Jones, J.A.2
Wesley, I.V.3
-
28
-
-
79955812835
-
Optimising bacterial DNA extraction from faecal samples: comparison of three methods
-
Smith B., Li N., Andersen A.S., Slotved H.C., Krogfelt K.A. Optimising bacterial DNA extraction from faecal samples: comparison of three methods. Open Microbiol. J. 2011, 5:14-17.
-
(2011)
Open Microbiol. J.
, vol.5
, pp. 14-17
-
-
Smith, B.1
Li, N.2
Andersen, A.S.3
Slotved, H.C.4
Krogfelt, K.A.5
-
29
-
-
55149118400
-
An effective method for isolation of DNA from pig faeces and comparison of five different methods
-
Tang J.N., Zeng Z.G., Wang H.N., Yang T., Zhang P.J., Li Y.L., Zhang A.Y., Fan W.Q., Zhang Y., Yang X., Zhao S.J., Tian G.B., Zou L.K. An effective method for isolation of DNA from pig faeces and comparison of five different methods. J. Microbiol. Methods 2008, 75:432-436.
-
(2008)
J. Microbiol. Methods
, vol.75
, pp. 432-436
-
-
Tang, J.N.1
Zeng, Z.G.2
Wang, H.N.3
Yang, T.4
Zhang, P.J.5
Li, Y.L.6
Zhang, A.Y.7
Fan, W.Q.8
Zhang, Y.9
Yang, X.10
Zhao, S.J.11
Tian, G.B.12
Zou, L.K.13
-
30
-
-
77956418017
-
Community dynamics in the mouse gut microbiota: a possible role for IRF9-regulated genes in community homeostasis
-
Thompson C.L., Hofer M.J., Campbell I.L., Holmes A.J. Community dynamics in the mouse gut microbiota: a possible role for IRF9-regulated genes in community homeostasis. PLoS One 2010, 5:e10335.
-
(2010)
PLoS One
, vol.5
-
-
Thompson, C.L.1
Hofer, M.J.2
Campbell, I.L.3
Holmes, A.J.4
-
31
-
-
0029807317
-
Conjugal transfer of the 5-nitroimidazole resistance plasmid pIP417 from Bacteroides vulgatus BV-17: characterization and nucleotide sequence analysis of the mobilization region
-
Trinh S., Haggoud A., Reysset G. Conjugal transfer of the 5-nitroimidazole resistance plasmid pIP417 from Bacteroides vulgatus BV-17: characterization and nucleotide sequence analysis of the mobilization region. J. Bacteriol. 1996, 178:6671-6676.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 6671-6676
-
-
Trinh, S.1
Haggoud, A.2
Reysset, G.3
-
32
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
Turnbaugh P.J., Ley R.E., Mahowald M.A., Magrini V., Mardis E.R., Gordon J.I. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 2006, 444:1027-1031.
-
(2006)
Nature
, vol.444
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Mahowald, M.A.3
Magrini, V.4
Mardis, E.R.5
Gordon, J.I.6
-
33
-
-
84874191616
-
Shiga toxin-encoding genes (stx genes) in human fecal samples
-
Urdahl A.M., Solheim H.T., Vold L., Hasseltvedt V., Wasteson Y. Shiga toxin-encoding genes (stx genes) in human fecal samples. APMIS 2013, 121:202-210.
-
(2013)
APMIS
, vol.121
, pp. 202-210
-
-
Urdahl, A.M.1
Solheim, H.T.2
Vold, L.3
Hasseltvedt, V.4
Wasteson, Y.5
|