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Volumn 84, Issue 12, 2012, Pages 1993-2002

Phylogenetic analysis of probable Non-human genes of group A rotaviruses isolated from children with acute gastroenteritis in Belém, Brazil

Author keywords

Diarrhoea; Genetic and molecular diversity; Rotavirus

Indexed keywords

NONSTRUCTURAL PROTEIN 1; NONSTRUCTURAL PROTEIN 6; PROTEIN VP1; PROTEIN VP4; PROTEIN VP6; PROTEIN VP7; UNCLASSIFIED DRUG; VIRUS PROTEIN;

EID: 84867723839     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.23364     Document Type: Article
Times cited : (23)

References (66)
  • 1
    • 79955623806 scopus 로고    scopus 로고
    • Whole genome characterization of new bovine rotavirus G21P[29] and G24P[33] strains provides evidence for interspecies transmission
    • Abe M, Ito N, Masatani T, Nakagawa K, Yamaok S, Kanamaru Y, Suzuki H, Shibano K, Arashi Y, Sugiyama M. 2011. Whole genome characterization of new bovine rotavirus G21P[29] and G24P[33] strains provides evidence for interspecies transmission. J Virol 92:952-960.
    • (2011) J Virol , vol.92 , pp. 952-960
    • Abe, M.1    Ito, N.2    Masatani, T.3    Nakagawa, K.4    Yamaok, S.5    Kanamaru, Y.6    Suzuki, H.7    Shibano, K.8    Arashi, Y.9    Sugiyama, M.10
  • 3
    • 34748827563 scopus 로고    scopus 로고
    • Molecular characterization of G11P[25] and G3P[3] human rotavirus strains associated with asymptomatic infection in South India
    • Banerjee I, Iturriza-Gómara M, Rajendran P, Primrose B, Ramani S, Gray JJ, Brown DW, Kang G. 2007. Molecular characterization of G11P[25] and G3P[3] human rotavirus strains associated with asymptomatic infection in South India. J Med Virol 79:1768-1774.
    • (2007) J Med Virol , vol.79 , pp. 1768-1774
    • Banerjee, I.1    Iturriza-Gómara, M.2    Rajendran, P.3    Primrose, B.4    Ramani, S.5    Gray, J.J.6    Brown, D.W.7    Kang, G.8
  • 5
    • 0022369834 scopus 로고
    • Isolation of feline rotaviruses and their relationship to human and simian isolates by electropherotype and serotype
    • Birch CJ, Heath RL, Marshall JA, Liu S, Gust ID. 1985. Isolation of feline rotaviruses and their relationship to human and simian isolates by electropherotype and serotype. J Gen Virol 66:2731-2735.
    • (1985) J Gen Virol , vol.66 , pp. 2731-2735
    • Birch, C.J.1    Heath, R.L.2    Marshall, J.A.3    Liu, S.4    Gust, I.D.5
  • 6
    • 0036263034 scopus 로고    scopus 로고
    • Genetic variation of capsid protein VP7 in genotype G4 human rotavirus strains: simultaneous emergence and spread of different lineages in Argentina
    • Bok K, Matson DO, Gómez JA. 2002. Genetic variation of capsid protein VP7 in genotype G4 human rotavirus strains: simultaneous emergence and spread of different lineages in Argentina. J Clin Microbiol 40:2016-2022.
    • (2002) J Clin Microbiol , vol.40 , pp. 2016-2022
    • Bok, K.1    Matson, D.O.2    Gómez, J.A.3
  • 8
    • 0033066183 scopus 로고    scopus 로고
    • Genetic variation in the VP4 and NSP4 genes of human rotavirus serotype 3 (G3 type) isolated in China and Japan
    • Cao XR, Akihara S, Fang ZY, Nakagomi O, Ushijima H. 1999. Genetic variation in the VP4 and NSP4 genes of human rotavirus serotype 3 (G3 type) isolated in China and Japan. Microbiol Immunol 43:171-175.
    • (1999) Microbiol Immunol , vol.43 , pp. 171-175
    • Cao, X.R.1    Akihara, S.2    Fang, Z.Y.3    Nakagomi, O.4    Ushijima, H.5
  • 10
    • 80052155096 scopus 로고    scopus 로고
    • Phylogenetic analysis of VP1, VP2, and VP3 gene segments of genotype G5 group A rotavirus strains circulating in Brazil between 1986 and 2005
    • Da Silva MF, Tort LF, Gómez MM, Assis RM, De Mendonça MC, Volotão EDEM, Leite JP. 2011. Phylogenetic analysis of VP1, VP2, and VP3 gene segments of genotype G5 group A rotavirus strains circulating in Brazil between 1986 and 2005. Virus Res 160:381-388.
    • (2011) Virus Res , vol.160 , pp. 381-388
    • Da Silva, M.F.1    Tort, L.F.2    Gómez, M.M.3    Assis, R.M.4    De Mendonça, M.C.5    Volotão, E.D.E.M.6    Leite, J.P.7
  • 13
    • 34548407520 scopus 로고    scopus 로고
    • Rotaviruses.
    • Knip DM, Howley PM, editors., 5th edition. Philadelphia: Lippincott William and Wilkins.
    • Estes MK, Kapikian AZ. 2007. Rotaviruses. In: Knip DM, Howley PM, editors. Fields virology, 5th edition. Philadelphia: Lippincott William and Wilkins. pp 1917-1974.
    • (2007) Fields virology , pp. 1917-1974
    • Estes, M.K.1    Kapikian, A.Z.2
  • 16
    • 74749087711 scopus 로고    scopus 로고
    • Impact of rotavirus vaccination: The importance of monitoring strains
    • Gentsch JR, Parashar UD, Glass RI. 2009. Impact of rotavirus vaccination: The importance of monitoring strains. Future Microbiol 4:1231-1234.
    • (2009) Future Microbiol , vol.4 , pp. 1231-1234
    • Gentsch, J.R.1    Parashar, U.D.2    Glass, R.I.3
  • 18
    • 0031920409 scopus 로고    scopus 로고
    • Shif, I. Three forms of AU-1 like human rotaviruses differentiated by their overall genomic constellation and by the sequence of their VP8*
    • Gollop R, Nakagomi O, Silberstein I, Shulman LM, Greenberg HB, Mendelson E. 1998. Shif, I. Three forms of AU-1 like human rotaviruses differentiated by their overall genomic constellation and by the sequence of their VP8*. Arch Virol 143:263-277.
    • (1998) Arch Virol , vol.143 , pp. 263-277
    • Gollop, R.1    Nakagomi, O.2    Silberstein, I.3    Shulman, L.M.4    Greenberg, H.B.5    Mendelson, E.6
  • 19
    • 0033577080 scopus 로고
    • Rotavirus serotype G5: An emerging cause of epidemic childhood diarrhoea
    • Gouvea V, Santos N. 1994. Rotavirus serotype G5: An emerging cause of epidemic childhood diarrhoea. Vaccine 17:1291-1292.
    • (1994) Vaccine , vol.17 , pp. 1291-1292
    • Gouvea, V.1    Santos, N.2
  • 21
    • 0033942340 scopus 로고    scopus 로고
    • Surveillance of rotavirus strains in the United States: Identification of unusual strains. The National Rotavirus Strain Surveillance System collaborating laboratories
    • Griffin DD, Kirkwood CD, Parashar UD, Woods PA, Bresee JS, Glass RI, Gentsch JR. 2000. Surveillance of rotavirus strains in the United States: Identification of unusual strains. The National Rotavirus Strain Surveillance System collaborating laboratories. J Clin Microbiol 38:2784-2787.
    • (2000) J Clin Microbiol , vol.38 , pp. 2784-2787
    • Griffin, D.D.1    Kirkwood, C.D.2    Parashar, U.D.3    Woods, P.A.4    Bresee, J.S.5    Glass, R.I.6    Gentsch, J.R.7
  • 22
    • 0036058274 scopus 로고    scopus 로고
    • Characterization of nontypeable rotavirus strains from the United States: Identification of a new rotavirus reassortant (P2A[6],G12) and rare P3[9] strains related to bovine rotaviruses
    • Griffin DD, Nakagomi T, Hoshino Y, Nakagomi O, Kirkwood CD, Parashar UD, Glass RI, Gentsch JR. 2002. Characterization of nontypeable rotavirus strains from the United States: Identification of a new rotavirus reassortant (P2A[6], G12) and rare P3[9] strains related to bovine rotaviruses. Virology 294:256-269.
    • (2002) Virology , vol.294 , pp. 256-269
    • Griffin, D.D.1    Nakagomi, T.2    Hoshino, Y.3    Nakagomi, O.4    Kirkwood, C.D.5    Parashar, U.D.6    Glass, R.I.7    Gentsch, J.R.8
  • 23
  • 24
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp 41:95-98.
    • (1999) Nucl Acids Symp , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 26
    • 0026808707 scopus 로고
    • A VP4 sequence highly conserved in human rotavirus strain AU-1 and feline rotavirus strain FRV-1
    • Isegawa Y, Nakagomi O, Nakagomi T, Ueda S. 1992. A VP4 sequence highly conserved in human rotavirus strain AU-1 and feline rotavirus strain FRV-1. J Gen Virol 73:1939-1946.
    • (1992) J Gen Virol , vol.73 , pp. 1939-1946
    • Isegawa, Y.1    Nakagomi, O.2    Nakagomi, T.3    Ueda, S.4
  • 27
    • 0036278170 scopus 로고    scopus 로고
    • Molecular characterization of VP6 genes of human rotavirus isolates: correlation of genogroups with subgroups and evidence of independent segregation
    • Iturriza-Gómara M, Wong C, Blome S, Desselberger U, Gray J. 2002. Molecular characterization of VP6 genes of human rotavirus isolates: correlation of genogroups with subgroups and evidence of independent segregation. J Virol 76:6596-6601.
    • (2002) J Virol , vol.76 , pp. 6596-6601
    • Iturriza-Gómara, M.1    Wong, C.2    Blome, S.3    Desselberger, U.4    Gray, J.5
  • 30
    • 33744955170 scopus 로고    scopus 로고
    • Molecular characterization of a rare G3P[3] human rotavirus reassortant strain reveals evidence for multiple human-animal interspecies transmissions
    • Khamrin P, Maneekarn N, Peerakome S, Yagyu F, Okitsu S, Ushijima H. 2006. Molecular characterization of a rare G3P[3] human rotavirus reassortant strain reveals evidence for multiple human-animal interspecies transmissions. J Med Virol 78:986-994.
    • (2006) J Med Virol , vol.78 , pp. 986-994
    • Khamrin, P.1    Maneekarn, N.2    Peerakome, S.3    Yagyu, F.4    Okitsu, S.5    Ushijima, H.6
  • 31
    • 0019296687 scopus 로고
    • Simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences
    • Kimura MA. 1980. Simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. J Mol Evol 16:111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.A.1
  • 32
    • 0041919181 scopus 로고    scopus 로고
    • Unexpected detection of animal VP7 genes among common rotavirus strains isolated from children in Mexico
    • Laird AR, Ibarra V, Ruiz-Palacios G, Guerrero ML, Glass RI, Gentsch JR. 2003. Unexpected detection of animal VP7 genes among common rotavirus strains isolated from children in Mexico. J Clin Microbiol 41:4400-4403.
    • (2003) J Clin Microbiol , vol.41 , pp. 4400-4403
    • Laird, A.R.1    Ibarra, V.2    Ruiz-Palacios, G.3    Guerrero, M.L.4    Glass, R.I.5    Gentsch, J.R.6
  • 33
    • 0027496241 scopus 로고
    • Nucleotide sequence of the VP4-encoding gene of an unusual human rotavirus (HCR3)
    • Li B, Clark HF, Gouvea V. 1993. Nucleotide sequence of the VP4-encoding gene of an unusual human rotavirus (HCR3). Virology 196:825-830.
    • (1993) Virology , vol.196 , pp. 825-830
    • Li, B.1    Clark, H.F.2    Gouvea, V.3
  • 38
    • 0036372340 scopus 로고    scopus 로고
    • Detection and characterization of rotavirus G and P types from children participating in a rotavirus vaccine trial in Belém, Brazil
    • Mascarenhas JDP, Linhares AC, Gabbay YB, Leite JPG. 2002. Detection and characterization of rotavirus G and P types from children participating in a rotavirus vaccine trial in Belém, Brazil. Mem Inst Oswaldo Cruz 97:113-117.
    • (2002) Mem Inst Oswaldo Cruz , vol.97 , pp. 113-117
    • Mascarenhas, J.D.P.1    Linhares, A.C.2    Gabbay, Y.B.3    Leite, J.P.G.4
  • 41
    • 33645788860 scopus 로고    scopus 로고
    • Full genomic analysis of human rotavirus strain B4106 and lapine rotavirus strain 30/96 provides evidence for interspecies transmission
    • Matthijnssens J, Rahman M, Martella V, Xuelei Y, De Vos S, De Leener K, Ciarlet M, Buonavoglia C, Ranst MV. 2006. Full genomic analysis of human rotavirus strain B4106 and lapine rotavirus strain 30/96 provides evidence for interspecies transmission. J Virol 80:3801-3810.
    • (2006) J Virol , vol.80 , pp. 3801-3810
    • Matthijnssens, J.1    Rahman, M.2    Martella, V.3    Xuelei, Y.4    De Vos, S.5    De Leener, K.6    Ciarlet, M.7    Buonavoglia, C.8    Ranst, M.V.9
  • 46
    • 79951952059 scopus 로고    scopus 로고
    • Genome sequence based molecular epidemiology of unusual US Rotavirus A G9 strains isolated from Omaha, USA between 1997 and 2000
    • Mijatovic-Rustempasic S, Bányai K, Esona MD, Foytich K, Bowen MD, Gentsch JR. 2011. Genome sequence based molecular epidemiology of unusual US Rotavirus A G9 strains isolated from Omaha, USA between 1997 and 2000. Infect Genet Evol 11:522-527.
    • (2011) Infect Genet Evol , vol.11 , pp. 522-527
    • Mijatovic-Rustempasic, S.1    Bányai, K.2    Esona, M.D.3    Foytich, K.4    Bowen, M.D.5    Gentsch, J.R.6
  • 47
    • 0026435530 scopus 로고
    • Hemagglutinin activity of two distinct genogroups of cat and cat rotavirus strains
    • Mochizuki M, Nakagomi O, Shibata S. 1992. Hemagglutinin activity of two distinct genogroups of cat and cat rotavirus strains. Arch Virol 122:373-381.
    • (1992) Arch Virol , vol.122 , pp. 373-381
    • Mochizuki, M.1    Nakagomi, O.2    Shibata, S.3
  • 48
    • 0030897593 scopus 로고    scopus 로고
    • Isolation from diarrheal and asymptomatic kittens of three rotavirus strains that belong to the AU-1 genogroup of human rotaviruses
    • Mochizuki M, Nakagomi T, Nakagomi O. 1997. Isolation from diarrheal and asymptomatic kittens of three rotavirus strains that belong to the AU-1 genogroup of human rotaviruses. J Clin Microbiol 35:1272-1275.
    • (1997) J Clin Microbiol , vol.35 , pp. 1272-1275
    • Mochizuki, M.1    Nakagomi, T.2    Nakagomi, O.3
  • 49
    • 0029417322 scopus 로고
    • Distinctness of NSP1 gene of human rotavirus AU-1 from NSP1 gene of other human genogroups
    • Nakagomi O, Kaga E. 1995. Distinctness of NSP1 gene of human rotavirus AU-1 from NSP1 gene of other human genogroups. Res Virol 146:423-428.
    • (1995) Res Virol , vol.146 , pp. 423-428
    • Nakagomi, O.1    Kaga, E.2
  • 50
    • 0036906992 scopus 로고    scopus 로고
    • Genomic relationships among rotaviruses recovered from various animal species as revealed by RNA-RNA hybridization assays
    • Nakagomi O, Nakagomi T. 2002. Genomic relationships among rotaviruses recovered from various animal species as revealed by RNA-RNA hybridization assays. Res Vet Sci 73:207-214.
    • (2002) Res Vet Sci , vol.73 , pp. 207-214
    • Nakagomi, O.1    Nakagomi, T.2
  • 52
    • 1242291839 scopus 로고    scopus 로고
    • Antigenic and genetic characterization of serotype G2 human rotavirus strains from the African continent
    • Page NA, Steele AD. 2004. Antigenic and genetic characterization of serotype G2 human rotavirus strains from the African continent. J Clin Microbiol 42:595-600.
    • (2004) J Clin Microbiol , vol.42 , pp. 595-600
    • Page, N.A.1    Steele, A.D.2
  • 53
    • 0036119449 scopus 로고    scopus 로고
    • Genetic analysis group A rotaviruses: evidence for interspecies transmission of rotavirus genes
    • Palombo EA. 2002. Genetic analysis group A rotaviruses: evidence for interspecies transmission of rotavirus genes. Virus Genes 24:11-20.
    • (2002) Virus Genes , vol.24 , pp. 11-20
    • Palombo, E.A.1
  • 55
    • 36549078066 scopus 로고    scopus 로고
    • Phylogenetic analysis of porcine rotavirus in Argentina: Increasing diversity of G4 strains and evidence of interspecies transmission
    • Parra GI, Vidales G, Gomez JA, Fernandez FM, Parreño V, Bok K. 2008. Phylogenetic analysis of porcine rotavirus in Argentina: Increasing diversity of G4 strains and evidence of interspecies transmission. Vet Microbiol 126:243-250.
    • (2008) Vet Microbiol , vol.126 , pp. 243-250
    • Parra, G.I.1    Vidales, G.2    Gomez, J.A.3    Fernandez, F.M.4    Parreño, V.5    Bok, K.6
  • 57
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 58
    • 11244302672 scopus 로고    scopus 로고
    • Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine
    • Santos N, Hoshino Y. 2005. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 15:29-56.
    • (2005) Rev Med Virol , vol.15 , pp. 29-56
    • Santos, N.1    Hoshino, Y.2
  • 59
    • 0028294270 scopus 로고
    • Species specificity and interspecies relatedness in VP4 genotypes demonstrated by VP4 sequence analysis of equine, feline, and canine rotavirus strains
    • Taniguchi K, Urasawa T, Urasawa S. 1994. Species specificity and interspecies relatedness in VP4 genotypes demonstrated by VP4 sequence analysis of equine, feline, and canine rotavirus strains. Virology 200:390-400.
    • (1994) Virology , vol.200 , pp. 390-400
    • Taniguchi, K.1    Urasawa, T.2    Urasawa, S.3
  • 60
    • 84355162383 scopus 로고    scopus 로고
    • 2008 Estimate of worldwide rotavirus-associated mortality in children younger than 5 years before the introduction of universal rotavirus vaccination programmes: A systematic review and meta-analysis
    • Tate JE, Burton AH, Boschi-Pinto C, Steele AD, Duque J, Parashar UD. 2011. 2008 Estimate of worldwide rotavirus-associated mortality in children younger than 5 years before the introduction of universal rotavirus vaccination programmes: A systematic review and meta-analysis. Lancet Infect Dis 3099:70253-70255.
    • (2011) Lancet Infect Dis , vol.3099 , pp. 70253-70255
    • Tate, J.E.1    Burton, A.H.2    Boschi-Pinto, C.3    Steele, A.D.4    Duque, J.5    Parashar, U.D.6
  • 61
    • 53249109344 scopus 로고    scopus 로고
    • Whole genome sequence and phylogenetic analyses reveal human rotavirus G3P[3] strains Ro1845 and HCR3A are examples of direct virion transmission of canine/feline rotaviruses to humans
    • Tsugawa T, Hoshino Y. 2008. Whole genome sequence and phylogenetic analyses reveal human rotavirus G3P[3] strains Ro1845 and HCR3A are examples of direct virion transmission of canine/feline rotaviruses to humans. Virology 380:344-353.
    • (2008) Virology , vol.380 , pp. 344-353
    • Tsugawa, T.1    Hoshino, Y.2
  • 63
    • 0842330909 scopus 로고    scopus 로고
    • Molecular characterization of a human rotavirus reveals porcine characteristics in most of the genes including VP6 and NSP4
    • Varghese V, Das S, Singh NB, Kojima K, Bhattacharya SK, Krishnan T, Kobayashi N, Naik TN. 2004. Molecular characterization of a human rotavirus reveals porcine characteristics in most of the genes including VP6 and NSP4. Arch Virol 149:155-172.
    • (2004) Arch Virol , vol.149 , pp. 155-172
    • Varghese, V.1    Das, S.2    Singh, N.B.3    Kojima, K.4    Bhattacharya, S.K.5    Krishnan, T.6    Kobayashi, N.7    Naik, T.N.8
  • 66
    • 77953527094 scopus 로고    scopus 로고
    • Full genomic analysis of a porcine-bovine reassortant G4P[6] rotavirus strain R479 isolated from an infant in China
    • Wang YH, Kobayashi N, Nagashima S, Zhou X, Ghosh S, Peng JS, Hu Q, Zhou DJ, Yan ZQ. 2010. Full genomic analysis of a porcine-bovine reassortant G4P[6] rotavirus strain R479 isolated from an infant in China. J Med Virol 82:1094-1102.
    • (2010) J Med Virol , vol.82 , pp. 1094-1102
    • Wang, Y.H.1    Kobayashi, N.2    Nagashima, S.3    Zhou, X.4    Ghosh, S.5    Peng, J.S.6    Hu, Q.7    Zhou, D.J.8    Yan, Z.Q.9


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