Increased frequency of rotavirus G3P[8] and G12P[8] in Argentina during 2008-2009: Whole-genome characterization of emerging G12P[8] strains

Journal of Clinical Virology

Volumn 54, Issue 2, 2012, Pages 162-167

  Stupka, Juan A ^a   Degiuseppe, Juan I ^a   Parra, Gabriel I ^b  

^a INSTITUTO NACIONAL DE ENFERMEDADES INFECCIOSAS   (Argentina)

^b UNIVERSIDAD NACIONAL DE ASUNCIÓN   (Paraguay)

Author keywords

Argentina; Children diarrhea; G12 strains; Genomic analyses; Rotavirus

Indexed keywords

PROTEIN VP7;

ACUTE DIARRHEA; ARGENTINA; ARTICLE; CHILD; FECES; GENE EXPRESSION; GENETIC ANALYSIS; GENETIC LINE; GENETIC VARIABILITY; GENOTYPE; HUMAN; MAJOR CLINICAL STUDY; MULTIPLEX POLYMERASE CHAIN REACTION; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRESCHOOL CHILD; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; ROTAVIRUS; ROTAVIRUS G12P[8]; ROTAVIRUS G3P[8]; SEQUENCE ANALYSIS; SPECIES DIVERSITY; VIRUS DETECTION; VIRUS GENOME; VIRUS STRAIN;

ARGENTINA; CHILD, PRESCHOOL; CLUSTER ANALYSIS; FEMALE; HUMANS; INFANT; INFANT, NEWBORN; MALE; MOLECULAR SEQUENCE DATA; PHYLOGEOGRAPHY; POLYMORPHISM, GENETIC; PREVALENCE; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; ROTAVIRUS; ROTAVIRUS INFECTIONS; SEQUENCE ANALYSIS, DNA;

EID: 84860348386     PISSN: 13866532     EISSN: 18735967     Source Type: Journal    
DOI: 10.1016/j.jcv.2012.02.011     Document Type: Article

References (43)

1. Parashar U.D., Burton A., Lanata C., Boschi-Pinto C., Shibuya K., Steele D., et al. Global mortality associated with rotavirus disease among children in 2004. J Infect Dis 2009, 200(Suppl. 1):S9-S15.
2. de Oliveira L.H., Danovaro-Holliday M.C., Matus C.R., Andrus J.K. Rotavirus vaccine introduction in the Americas: progress and lessons learned. Expert Rev Vaccines 2008, 7:345-353.
3. Estes M.K., Kappikian A.Z. Rotaviruses. Fields virology 2007, 1917-1974. Lippincott Willians and Wilkins, Philadelphia. 5th ed. D.M. Knipe, P.M. Howley, D.E. Griffin, R.A. Lamb, M.A. Martin, B. Roizman (Eds.).
4. Matthijnssens J., Ciarlet M., McDonald S.M., Attoui H., Banyai K., Brister J.R., et al. Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG). Arch Virol 2011, 56:1397-1413.
5. Santos N., Hoshino Y. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 2005, 15:29-56.
6. Leite J.P., Carvalho-Costa F.A., Linhares A.C. Group A rotavirus genotypes and the ongoing Brazilian experience: a review. Mem Inst Oswaldo Cruz 2008, 103:745-753.
7. Hull J.J., Teel E.N., Kerin T.K., Freeman M.M., Esona M.D., Gentsch J.R., et al. United States rotavirus strain surveillance from 2005 to 2008: genotype prevalence before and after vaccine introduction. Pediatr Infect Dis J 2011, 30:S42-S47.
8. Parra G.I. Seasonal shifts of group A rotavirus strains as a possible mechanism of persistence in the human population. J Med Virol 2009, 81:568-571.
9. Iturriza-Gomara M., Dallman T., Banyai K., Bottiger B., Buesa J., Diedrich S., et al. Rotavirus genotypes co-circulating in Europe between 2006 and 2009 as determined by EuroRotaNet, a pan-European collaborative strain surveillance network. Epidemiol Infect 2011, 139:895-909.
10. Rahman M., Matthijnssens J., Yang X., Delbeke T., Arijs I., Taniguchi K., et al. Evolutionary history and global spread of the emerging G12 human rotaviruses. J Virol 2007, 81:2382-2390.
11. Mukherjee A., Chattopadhyay S., Bagchi P., Dutta D., Singh N.B., Arora R., et al. Surveillance and molecular characterization of rotavirus strains circulating in Manipur, north-eastern India: increasing prevalence of emerging G12 strains. Infect Genet Evol 2010, 10:311-320.
12. Castello A.A., Arguelles M.H., Rota R.P., Olthoff A., Jiang B., Glass R.I., et al. Molecular epidemiology of group A rotavirus diarrhea among children in Buenos Aires, Argentina, from 1999 to 2003 and emergence of the infrequent genotype G12. J Clin Microbiol 2006, 44:2046-2050.
13. Martinez M., Amarilla A.A., Galeano M.E., Aquino V.H., Farina N., Russomando G., et al. Predominance of rotavirus G2P[4] and emergence of G12P[9] strains in Asuncion, Paraguay, 2006-2007. Arch Virol 2010, 155:525-533.
14. Pietruchinski E., Benati F., Lauretti F., Kisielius J., Ueda M., Volotao E.M., et al. Rotavirus diarrhea in children and adults in a southern city of Brazil in 2003: distribution of G/P types and finding of a rare G12 strain. J Med Virol 2006, 78:1241-1249.
15. Soares Lda S., Lobo Pdos S., Mascarenhas J.D., Neri D.L., Guerra Sde F., de Oliveira Ado S., et al. Identification of lineage III of G12 rotavirus strains in diarrheic children in the Northern Region of Brazil between 2008 and 2010. Arch Virol 2012, 157:135-139.
16. WHO Update position paper. Weekly epidemiological record 2009, 84. pp. 533-540.
17. Das B.K., Gentsch J.R., Cicirello H.G., Woods P.A., Gupta A., Ramachandran M., et al. Characterization of rotavirus strains from newborns in New Delhi, India. J Clin Microbiol 1994, 32:1820-1822.
18. Gouvea V., Glass R.I., Woods P., Taniguchi K., Clark H.F., Forrester B., et al. Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens. J Clin Microbiol 1990, 28:276-282.
19. Gentsch J.R., Glass R.I., Woods P., Gouvea V., Gorziglia M., Flores J., et al. Identification of group A rotavirus gene 4 types by polymerase chain reaction. J Clin Microbiol 1992, 30:1365-1373.
20. Pun S.B., Nakagomi T., Sherchand J.B., Pandey B.D., Cuevas L.E., Cunliffe N.A., et al. Detection of G12 human rotaviruses in Nepal. Emerg Infect Dis 2007, 13:482-484.
21. Gouvea V., Santos N., Timenetsky Mdo C. Identification of bovine and porcine rotavirus G types by PCR. J Clin Microbiol 1994, 32:1338-1340.
22. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. J Mol Biol 1990, 215:403-410.
23. Matthijnssens J., Ciarlet M., Rahman M., Attoui H., Banyai K., Estes M.K., et al. Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments. Arch Virol 2008, 153:1621-1629.
24. Hall T. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 1999, 41:95-98.
25. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011, 28:2731-2739.
26. Esteban L.E., Rota R.P., Gentsch J.R., Jiang B., Esona M., Glass R.I., et al. Molecular epidemiology of group A rotavirus in Buenos Aires, Argentina 2004-2007: reemergence of G2P[4] and emergence of G9P[8] strains. J Med Virol 2010, 82:1083-1093.
27. Stupka J.A., Carvalho P., Amarilla A.A., Massana M., Parra G.I. National Rotavirus Surveillance in Argentina: high incidence of G9P[8] strains and detection of G4P[6] strains with porcine characteristics. Infect Genet Evol 2009, 9:1225-1231.
28. Ministry of Health Argentina. http://www.msal.gov.ar/htm/site/pdf/BoletinSemanalVigilancia15-02-10.xls.
29. Snelling T.L., Andrews R.M., Kirkwood C.D., Culvenor S., Carapetis J.R. Case-control evaluation of the effectiveness of the G1P[8] human rotavirus vaccine during an outbreak of rotavirus G2P[4] infection in central Australia. Clin Infect Dis 2011, 52:191-199.
30. Justino M.C., Linhares A.C., Lanzieri T.M., Miranda Y., Mascarenhas J.D., Abreu E., et al. Effectiveness of the monovalent G1P[8] human rotavirus vaccine against hospitalization for severe G2P[4] rotavirus gastroenteritis in Belem, Brazil. Pediatr Infect Dis J 2011, 30:396-401.
31. Patel M., Pedreira C., De Oliveira L.H., Tate J., Orozco M., Mercado J., et al. Association between pentavalent rotavirus vaccine and severe rotavirus diarrhea among children in Nicaragua. JAMA 2009, 301:2243-2251.
32. Linhares A.C., Stupka J.A., Ciapponi A., Bardach A.E., Glujovsky D., Aruj P.K., et al. Burden and typing of rotavirus group A in Latin America and the Caribbean: systematic review and meta-analysis. Rev Med Virol 2011, 21:89-109.
33. Stupka J.A., Parra G.I., Gomez J., Arbiza J. Detection of human rotavirus G9P[8] strains circulating in Argentina: phylogenetic analysis of VP7 and NSP4 genes. J Med Virol 2007, 79:838-842.
34. Bok K., Castagnaro N., Borsa A., Nates S., Espul C., Fay O., et al. Surveillance for rotavirus in Argentina. J Med Virol 2001, 65:190-198.
35. Amarilla A., Espinola E.E., Galeano M.E., Farina N., Russomando G., Parra G.I. Rotavirus infection in the Paraguayan population from 2004 to 2005: high incidence of rotavirus strains with short electropherotype in children and adults. Med Sci Monit 2007, 13:CR333-CR337.
36. Kirkwood C.D., Boniface K., Barnes G.L., Bishop R.F. Distribution of rotavirus genotypes after introduction of rotavirus vaccines, Rotarix(R) and RotaTeq(R), into the National Immunization Program of Australia. Pediatr Infect Dis J 2011, 30:S48-S53.
37. Castello A.A., Nakagomi T., Nakagomi O., Jiang B., Kang J.O., Glass R.I., et al. Characterization of genotype P[9]G12 rotavirus strains from Argentina: high similarity with Japanese and Korean G12 strains. J Med Virol 2009, 81:371-381.
38. Pietsch C., Liebert U.G. Human infection with G12 rotaviruses, Germany. Emerg Infect Dis 2009, 15:1512-1515.
39. Wulan W.N., Listiyaningsih E., Samsi K.M., Agtini M.D., Kasper M.R., Putnam S.D. Identification of a rotavirus G12 strain, Indonesia. Emerg Infect Dis 2010, 16:159-161.
40. Ahmed K., Batuwanthudawe R., Chandrasena T.G., Mitui M.T., Rajindrajith S., Galagoda G., et al. Rotavirus infections with multiple emerging genotypes in Sri Lanka. Arch Virol 2010, 155:71-75.
41. McDonald S.M., Matthijnssens J., McAllen J.K., Hine E., Overton L., Wang S., et al. Evolutionary dynamics of human rotaviruses: balancing reassortment with preferred genome constellations. PLoS Pathog 2009, 5:e1000634. 10.1371/journal.ppat.1000634.
42. Sharma S., Ray P., Gentsch J.R., Glass R.I., Kalra V., Bhan M.K. Emergence of G12 rotavirus strains in Delhi, India, in 2000 to 2007. J Clin Microbiol 2008, 46:1343-1348.
43. Freeman M.M., Kerin T., Hull J., Teel E., Esona M., Parashar U., et al. Phylogenetic analysis of novel G12 rotaviruses in the United States: a molecular search for the origin of a new strain. J Med Virol 2009, 81:736-746.