Characterization of Xyn10A, a highly active xylanase from the human gut bacterium Bacteroides xylanisolvens XB1A

Applied Microbiology and Biotechnology

Volumn 87, Issue 6, 2010, Pages 2097-2105

  Mirande, Caroline ^a   Mosoni, Pascale ^a   Béra Maillet, Christel ^a   Bernalier Donadille, Annick ^a   Forano, Evelyne ^a  

^a CEMAGREF   (France)

Author keywords

Bacteroides xylanisolvens; GH10; Human gut; Xylanase

Indexed keywords

ARABINOXYLANS; BACTEROIDES; CARBOXY METHYLCELLULOSE; CATALYTIC DOMAINS; CATALYTIC PROPERTIES; CELLO-OLIGOSACCHARIDES; CELLOBIOSIDE; GENE PRODUCTS; GLYCOSIDE HYDROLASE FAMILY 10; HUMAN GUTS; OPTIMAL TEMPERATURE; PHYLOGENETIC ANALYSIS; SIGNAL PEPTIDE; XYLANASES; XYLOBIOSES;

ESCHERICHIA COLI; GLUCOSE;

POLYSACCHARIDES;

CARBOXYMETHYLCELLULOSE; RECOMBINANT ENZYME; UNCLASSIFIED DRUG; XYLAN ENDO 1,3 BETA XYLOSIDASE; XYN10A ENZYME;

BACTERIUM; ENZYME ACTIVITY; GENE EXPRESSION; GENETIC ANALYSIS; PH; PHYLOGENETICS; PROTEIN; RECOMBINATION; TEMPERATURE EFFECT;

ARTICLE; BACTEROIDES; BACTEROIDES XYLANISOLVENS; DNA SEQUENCE; ENZYME PURIFICATION; ENZYME SPECIFICITY; ESCHERICHIA COLI; GENE EXPRESSION; GENE ISOLATION; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY;

BACTERIAL PROTEINS; BACTEROIDES; ENZYME STABILITY; GLYCOSIDE HYDROLASES; HUMANS; INTESTINES; KINETICS; MOLECULAR SEQUENCE DATA; PHYLOGENY; SUBSTRATE SPECIFICITY;

BACTERIA (MICROORGANISMS); BACTEROIDES; ESCHERICHIA COLI; TRITICUM AESTIVUM; TRITICUM AESTIVUM SUBSP. SPELTA;

EID: 77955557236     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-010-2694-0     Document Type: Article

References (35)

1. T Baba R Shinke T Nanmori 1994 Identification and characterization of clustered genes for thermostable xylan-degrading enzymes, β-xylosidase and xylanase, of Bacillus stearothermophilus 21 Appl Environ Microbiol 60 2252 2258 1:CAS:528:DyaK2cXlvFOhtr0%3D
2. C Béra-Maillet Y Ribot E Forano 2004 Fiber-degrading systems of different strains of the genus Fibrobacter Appl Environ Microbiol 70 2172 2179 10.1128/AEM.70.4.2172-2179.2004 (Pubitemid 38500517)
3. P Biely M Vrsanská M Tenkanen D Kluepfel 1997 Endo-β1, 4-xylanase families: differences in catalytic properties J Biotechnol 57 151 166 10.1016/S0168-1656(97)00096-5 1:CAS:528:DyaK2sXmvVarsb8%3D (Pubitemid 27397479)
4. TM Bourgois V Van Craeyveld S Van Campenhout CM Courtin JA Delcour J Robben G Volckaert 2007 Recombinant expression and characterization of XynD from Bacillus subtillis subsp. subtilis ATCC 6051: a GH43 arabinoxylan arabinofuranohydrolase Appl Microbiol Biotechnol 75 1309 1317 10.1007/s00253-007-0956-2 1:CAS:528:DC%2BD2sXmvVKntLw%3D (Pubitemid 46976671)
5. BL Cantarel PM Coutinho C Rancurel T Bernard V Lombard B Henrissat 2009 The Carbohydrate-Active EnZymes database (CAZy): an expert resource for glycogenomics Nucleic Acids Res 37 D233 D238 10.1093/nar/gkn663 1:CAS:528:DC%2BD1cXhsFejtL7K
6. C Chassard V Goumy M Leclerc C Del'homme A Bernalier-Donadille 2007 Characterization of the xylan-degrading microbial community from human faeces FEMS Microbiol Ecol 61 121 131 10.1111/j.1574-6941.2007.00314.x 1:CAS:528:DC%2BD2sXnsVags70%3D (Pubitemid 46889818)
7. C Chassard KP Scott P Marquet JC Martin C Del'homme M Dapoigny HJ Flint A Bernalier-Donadille 2008 Assessment of metabolic diversity within the intestinal microbiota from healthy humans using combined molecular and cultural approaches FEMS Microbiol Ecol 66 496 504 10.1111/j.1574-6941.2008.00595.x 1:CAS:528:DC%2BD1cXhsVyqu7nP
8. C Chassard E Delmas PA Lawson A Bernalier-Donadille 2008 Bacteroides xylanisolvens sp. nov., a xylan-degrading bacterium isolated from human faeces Int J Syst Evol Microbiol 58 1008 1013 10.1099/ijs.0.65504-0 1:CAS:528:DC%2BD1cXmtlSiur8%3D
9. T Collins C Gerday G Feller 2005 Xylanases, xylanase families and extremophilic xylanases FEMS Microbiol Rev 29 3 23 10.1016/j.femsre.2004.06.005 1:CAS:528:DC%2BD2MXkvFeiug%3D%3D (Pubitemid 40103579)
10. A Dereeper V Guignon G Blanc S Audic S Buffet F Chevenet J-F Dufayard S Guindon V Lefort M Lescot J-M Claverie O Gascuel 2008 Phylogeny.fr: robust phylogenetic analysis for the non-specialist Nucleic Acids Res 36 W465 W469 10.1093/nar/gkn180 1:CAS:528:DC%2BD1cXptlKktrs%3D
11. E Devillard C Bera-Maillet HJ Flint KP Scott CJ Newbold RJ Wallace J-P Jouany E Forano 2003 Characterisation of XYN10B, a modular xylanase from the ruminal protozoan Polyplastron multivesiculatum, with a family 22 carbohydrate-binding module that binds to cellulose Biochem J 373 495 503 10.1042/BJ20021784 1:CAS:528:DC%2BD3sXmsFGrtL0%3D (Pubitemid 36897851)
12. V Ducros SJ Charnock U Derewenda ZS Derewenda Z Dauter C Dupont F Shareck R Morosoli D Kluepfel G Davies 2000 Substrate specificity in glycoside hydrolase family 10. Structural and kinetic analysis of the Streptomyces lividans xylanase 10A J Biol Chem 275 23020 23026 10.1074/jbc.275.30.23020 1:CAS:528:DC%2BD3cXltlGqsL8%3D
13. J Esbelin C Martin E Forano P Mosoni 2009 Differential translocation of green fluorescent protein fused to signal sequences of Ruminococcus albus cellulases by the Tat and Sec pathways of Escherichia coli FEMS Microbiol Lett 294 239 244 10.1111/j.1574-6968.2009.01576.x 1:CAS:528:DC%2BD1MXmtFaltr4%3D
14. CMG Fontes HJ Gilbert GP Hazlewood JH Clarke JAM Prates VA McKie T Nagy TH Fernandes LMA Ferreira 2000 A novel Cellvibrio mixtus family 10 xylanase that is both intracellular and expressed under non-inducing conditions Microbiology 146 1959 1967 1:CAS:528:DC%2BD3cXmtVemsbg%3D
15. O Gallardo P Diaz FI Pastor 2003 Characterization of a Paenibacillus cell-associated xylanase with high activity on aryl-xylosides: a new subclass of family 10 xylanases Appl Microbiol Biotechnol 61 226 233 1:CAS:528: DC%2BD3sXkvFGjtbk%3D
16. O Gascuel 1997 BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data Mol Biol Evol 14 685 695 1:CAS:528: DyaK2sXksVahs7o%3D
17. Gilkes NR, Claeyssens M, Aebersold R, Henrissat B, Meinke A, Morrison HD, Kilburn DG, Warren RA, Miller RC Jr (1991) Structural and functional relationships in two families of beta-1,4-glycanases. Eur J Biochem 202:367-377
18. ZZ Hamady MD Farrar TR Whitehead KT Holland JP Lodge SR Carding 2008 Identification and use of the putative Bacteroides ovatus xylanase promoter for the inducible production of recombinant human proteins Microbiology 154 3165 3174 10.1099/mic.0.2008/019109-0 1:CAS:528:DC%2BD1cXhtlagtbbN
19. RB Hespell TR Whitehead 1990 Physiology and genetics of xylan degradation by gastrointestinal tract bacteria J Dairy Sci 73 3013 3022 10.3168/jds.S0022-0302(90)78988-6 1:CAS:528:DyaK3MXjvVyhtA%3D%3D
20. DY Kim MK Han DS Park JS Lee HW Oh DH Shin TS Jeong SU Kim KS Bae KH Son HY Park 2009 Identification and characterization of a novel GH10 xylanase with a fibronectin type 3 domain from a gut bacterium of Eisenia fetida, Cellulosimicrobium sp. HY-13 Appl Environ Microbiol 75 7275 7279 10.1128/AEM.01075-09 1:CAS:528:DC%2BD1MXhsFSit7nM
21. W Liebl C Winterhalter W Baumeister M Armbrecht M Valdez 2008 Xylanase attachment to the cell wall of the hyperthermophilic bacterium Thermotoga maritima J Bacteriol 190 1350 1358 10.1128/JB.01149-07 1:CAS:528: DC%2BD1cXhvVOls7g%3D (Pubitemid 351215017)
22. T and Roseburia intestinalis XB6B4 from the human intestine J Appl Microbiol 10.1111/j.1365-2672.2010.04671
23. K Miyazaki JC Martin R Marinsek-Logar HJ Flint 1997 Degradation and utilisation of xylans by the rumen anaerobe Prevotella bryantii (formerly P. ruminicola subsp. brevis) Anaerobe 3 373 381 10.1006/anae.1997.0125 1:CAS:528:DyaK1cXhtVWnt7k%3D (Pubitemid 28043865)
24. C Notredame DG Higgins J Heringa 2000 T-Coffee: a novel method for fast and accurate multiple sequence alignment J Mol Biol 302 205 217 10.1006/jmbi.2000.4042 1:CAS:528:DC%2BD3cXmtVGntr8%3D
25. R Nouaille M Matulova A-M Delort E Forano 2005 Oligosaccharide synthesis in Fibrobacter succinogenes S85 and its modulation by the substrate FEBS J 272 2416 2427 10.1111/j.1742-4658.2005.04662.x 1:CAS:528:DC%2BD2MXksFyrsbc%3D (Pubitemid 40705063)
26. G Pell EJ Taylor TM Gloster JP Turkenburg CMG Fontes LMA Ferreira T Nagy SJ Clark GJ Davies HJ Gilbert 2004 The mechanism by which family 10 glycoside hydrolase bind decorated substrates J Biol Chem 279 9597 9605 10.1074/jbc.M312278200 1:CAS:528:DC%2BD2cXhs1OmtLw%3D (Pubitemid 38296028)
27. MLTM Polizeli ACS Rizzatti R Monti HF Terenzi JA Jorge DS Amorim 2005 Xylanases from fungi: properties and industrial applications Appl Microbiol Biotechnol 67 577 591 10.1007/s00253-005-1904-7 1:CAS:528:DC%2BD2MXkvFSrtLs%3D (Pubitemid 40903124)
28. H Rakotoarivonina C Terrie C Chambon E Forano P Mosoni 2009 Proteomic identification of CBM37-containing cellulases produced by the rumen cellulolytic bacterium Ruminococcus albus 20 and their putative involvement in bacterial adhesion to cellulose Arch Microbiol 191 379 388 10.1007/s00203-009-0463-1 1:CAS:528:DC%2BD1MXjtl2qsbw%3D
29. AA Salyers JR Vercellotti SHE West TD Wilkins 1977 Fermentation of mucin and plant polysaccharides by strains of Bacteroides from human colon Appl Environ Microbiol 33 319 322 1:STN:280:DyaE2s7ls1SrsA%3D%3D
30. AA Salyers SHE West JR Vercellotti TD Wilkins 1977 Fermentation of mucin and plant polysaccharides by anaerobic bacteria from human colon Appl Environ Microbiol 34 529 533 1:CAS:528:DyaE1cXjsVensQ%3D%3D
31. SV Valenzuela P Diaz FIJ Pastor 2010 Recombinant expression of an alkali stable GH10 xylanase from Paenibacillus barcinonensis J Agric Food Chem 10.1021/jf9045792
32. Weaver J, Whitehead TR, Cotta MA, Valentine PC, Salyers AA (1992) Genetic analysis of a locus on the Bacteroides ovatus chromosome which contains xylan utilization genes. Appl Environ Microbiol 58:2764-2770
33. KJ Wedekind HR Mansfield L Montgomery 1988 Enumeration and isolation of cellulolytic and hemicellulolytic bacteria from human feces Appl Environ Microbiol 54 1530 1535 1:STN:280:DyaL1czisFeksw%3D%3D
34. TR Whitehead 1995 Nucleotide sequences of xylan-inducible xylanase and xylosidase/arabinosidase genes from Bacteroides ovatus V975 Biochim Biophys Acta 1244 239 241
35. GM Zhang J Huang GR Huang LX Ma XE Zhang 2007 Molecular cloning and heterologous expression of a new xylanase gene from Plectosphaerella cucumerina Appl Microbiol Biotechnol 74 339 346 10.1007/s00253-006-0648-3 1:CAS:528:DC%2BD2sXht1yhurw%3D (Pubitemid 46204509)