A multienzyme complex channels substrates and electrons through acetyl-coA and methane biosynthesis pathways in Methanosarcina

PLoS ONE

Volumn 9, Issue 9, 2014, Pages

  Lieber, Dillon J ^a   Catlett, Jennifer ^a   Madayiputhiya, Nandu ^a   Nandakumar, Renu ^a   Lopez, Madeline M ^b   Metcalf, William W ^b   Buan, Nicole R ^a  

^a UNIVERSITY OF NEBRASKA LINCOLN   (United States)

^b UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACETIC ACID; ACETYL COENZYME A; COENZYME B; HETERODISULFIDE REDUCTASE; MESNA; METHANE; METHANOL; MULTIENZYME COMPLEX; OXIDOREDUCTASE; UNCLASSIFIED DRUG; ACETIC ACID DERIVATIVE; ALDEHYDE DEHYDROGENASE; CARBON MONOXIDE DEHYDROGENASE;

ARTICLE; BACTERIAL GROWTH; BIOSYNTHESIS; CONTROLLED STUDY; ELECTRON; ESCHERICHIA COLI; IN VIVO STUDY; MASS SPECTROMETRY; METHANOGEN; METHANOGENESIS; METHANOSARCINA; METHANOSARCINA ACETIVORANS; MOLECULAR WEIGHT; MUTANT; NONHUMAN; PHENOTYPE; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROTEIN INTERACTION; PROTEIN PURIFICATION; WESTERN BLOTTING; CATALYSIS; ENZYMOLOGY; GENETICS; METABOLISM; OXIDATION REDUCTION REACTION;

METHANOSARCINA;

ACETATES; ACETYL COENZYME A; ALDEHYDE OXIDOREDUCTASES; CATALYSIS; METHANE; METHANOSARCINA; MULTIENZYME COMPLEXES; OXIDATION-REDUCTION; OXIDOREDUCTASES;

EID: 84907211119     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0107563     Document Type: Article

References (37)

1. Agapakis CM, Boyle PM, Silver PA (2012) Natural strategies for the spatial optimization of metabolism in synthetic biology. Nat Chem Biol 8: 527-535.
2. Schlegel K, Welte C, Deppenmeier U, Muller V (2012) Electron transport during aceticlastic methanogenesis by Methanosarcina acetivorans involves a sodium-translocating Rnf complex. FEBS J 279: 4444-4452.
3. Herzog F, Kahraman A, Boehringer D, Mak R, Bracher A, et al. (2012) Structural probing of a protein phosphatase 2A network by chemical crosslinking and mass spectrometry. Science 337: 1348-1352.
4. Lie TJ, Costa KC, Lupa B, Korpole S, Whitman WB, et al. (2012) Essential anaplerotic role for the energy-converting hydrogenase Eha in hydrogenotrophic methanogenesis. Proc Natl Acad Sci U S A 109: 15473-15478.
5. Deppenmeier U, Lienard T, Gottschalk G (1999) Novel reactions involved in energy conservation by methanogenic archaea. FEBS Lett 457: 291-297.
6. Wang M, Tomb JF, Ferry JG (2011) Electron transport in acetate-grown Methanosarcina acetivorans. BMC Microbiol 11: 165.
7. Rother M, Metcalf WW (2004) Anaerobic growth of Methanosarcina acetivorans C2A on carbon monoxide: an unusual way of life for a methanogenic archaeon. Proc Natl Acad Sci U S A 101: 16929-16934.
8. Oelgeschlager E, Rother M (2009) In vivo role of three fused corrinoid/methyl transfer proteins in Methanosarcina acetivorans. Mol Microbiol 72: 1260-1272.
9. Fischer R, Thauer RK (1990) Ferredoxin-dependent methane formation from acetate in cell extracts of Methanosarcina barkeri (strain MS). FEBS Lett 269: 368-372.
10. Peer CW, Painter MH, Rasche ME, Ferry JG (1994) Characterization of a CO: heterodisulfide oxidoreductase system from acetate-grown Methanosarcina thermophila. J Bacteriol 176: 6974-6979.
11. Buan NR, Metcalf WW (2010) Methanogenesis by Methanosarcina acetivorans involves two structurally and functionally distinct classes of heterodisulfide reductase. Mol Microbiol 75: 843-853.
12. Funk T, Gu W, Friedrich S, Wang H, Gencic S, et al. (2004) Chemically distinct Ni sites in the A-cluster in subunit beta of the acetyl-CoA decarbonylase/synthase complex from Methanosarcina thermophila: Ni L-edge absorption and X-ray magnetic circular dichroism analyses. J Am Chem Soc 126: 88-95.
13. Gong W, Hao B, Wei Z, Ferguson DJ Jr, Tallant T, et al. (2008) Structure of the alpha2epsilon2 Ni-dependent CO dehydrogenase component of the Methanosarcina barkeri acetyl-CoA decarbonylase/synthase complex. Proc Natl Acad Sci U S A 105: 9558-9563.
14. Matschiavelli N, Oelgeschlager E, Cocchiararo B, Finke J, Rother M (2012) Function and Regulation of Isoforms of Carbon Monoxide Dehydrogenase/Acetyl Coenzyme A Synthase in Methanosarcina acetivorans. J Bacteriol 194: 5377-5387.
15. te Brommelstroet BW, Geerts WJ, Keltjens JT, van der Drift C, Vogels GD (1991) Purification and properties of 5,10-methylenetetrahydromethanopterin dehydrogenase and 5,10-methylenetetrahydromethanopterin reductase, two coenzyme F420-dependent enzymes, from Methanosarcina barkeri. Biochim Biophys Acta 1079: 293-302.
16. Aufhammer SW, Warkentin E, Ermler U, Hagemeier CH, Thauer RK, et al. (2005) Crystal structure of methylenetetrahydromethanopterin reductase (Mer) in complex with coenzyme F420: Architecture of the F420/FMN binding site of enzymes within the nonprolyl cis-peptide containing bacterial luciferase family. Protein Sci 14: 1840-1849.
17. Metcalf WW, Zhang JK, Apolinario E, Sowers KR, Wolfe RS (1997) A genetic system for Archaea of the genus Methanosarcina: liposome-mediated transformation and construction of shuttle vectors. Proc Natl Acad Sci U S A 94: 2626-2631.
18. Guss AM, Rother M, Zhang JK, Kulkarni G, Metcalf WW (2008) New methods for tightly regulated gene expression and highly efficient chromosomal integration of cloned genes for Methanosarcina species. Archaea 2: 193-203.
19. Baneyx F, Mujacic M (2004) Recombinant protein folding and misfolding in Escherichia coli. Nat Biotechnol 22: 1399-1408.
20. Yu LP, Xiang S, Lasso G, Gil D, Valle M, et al. (2009) A symmetrical tetramer for S. aureus pyruvate carboxylase in complex with coenzyme A. Structure 17: 823-832.
21. Aparicio JF, Fouces R, Mendes MV, Olivera N, Martin JF (2000) A complex multienzyme system encoded by five polyketide synthase genes is involved in the biosynthesis of the 26-membered polyene macrolide pimaricin in Streptomyces natalensis. Chem Biol 7: 895-905.
22. Miles EW (2013) The tryptophan synthase alpha2beta2 complex: a model for substrate channeling, allosteric communication, and pyridoxal phosphate catalysis. J Biol Chem 288: 10084-10091.
23. Krzycki JA, Lehman LJ, Zeikus JG (1985) Acetate catabolism by Methanosarcina barkeri: evidence for involvement of carbon monoxide dehydrogenase, methyl coenzyme M, and methylreductase. J Bacteriol 163: 1000-1006.
24. Gencic S, Grahame DA (2008) Two separate one-electron steps in the reductive activation of the A cluster in subunit beta of the ACDS complex in Methanosarcina thermophila. Biochemistry 47: 5544-5555.
25. Gorst CM, Ragsdale SW (1991) Characterization of the NiFeCO complex of carbon monoxide dehydrogenase as a catalytically competent intermediate in the pathway of acetyl-coenzyme A synthesis. J Biol Chem 266: 20687-20693.
26. Heiden S, Hedderich R, Setzke E, Thauer RK (1994) Purification of a 2-Subunit Cytochrome-B-Containing Heterodisulfide Reductase from Methanol-Grown Methanosarcina barkeri. European Journal of Biochemistry 221: 855-861.
27. Krzycki JA, Wolkin RH, Zeikus JG (1982) Comparison of unitrophic and mixotrophic substrate metabolism by acetate-adapted strain of Methanosarcina barkeri. J Bacteriol 149: 247-254.
28. Welander PV, Metcalf WW (2008) Mutagenesis of the C1 oxidation pathway in Methanosarcina barkeri: new insights into the Mtr/Mer bypass pathway. J Bacteriol 190: 1928-1936.
29. de Kok A, Hengeveld AF, Martin A, Westphal AH (1998) The pyruvate dehydrogenase multi-enzyme complex from Gram-negative bacteria. Biochim Biophys Acta 1385: 353-366.
30. Iverson TM, Luna-Chavez C, Cecchini G, Rees DC (1999) Structure of the Escherichia coli fumarate reductase respiratory complex. Science 284: 1961-1966.
31. Uetake H, Luria SE, Burrous JW (1958) Conversion of somatic antigens in Salmonella by phage infection leading to lysis or lysogeny. Virology 5: 68-91.
32. Metcalf WW, Zhang JK, Shi X, Wolfe RS (1996) Molecular, genetic, and biochemical characterization of the serC gene of Methanosarcina barkeri Fusaro. J Bacteriol 178: 5797-5802.
33. Metcalf WW, Zhang JK, Wolfe RS (1998) An anaerobic, intrachamber incubator for growth of Methanosarcina spp. on methanol-containing solid media. Appl Environ Microbiol 64: 768-770.
34. Buan NR, Kulkarni G, Metcalf WW (2011) Genetic methods for Methanosarcina species. In: Rosenzweig, A and S Ragsdale, eds Methods in Methane Metabolism (Methods in Enzymology) 494: 23-42.
35. Korndorfer IP, Skerra A (2002) Improved affinity of engineered streptavidin for the Strep-tag II peptide is due to a fixed open conformation of the lid-like loop at the binding site. Protein Sci 11: 883-893.
36. Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, et al. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 13: 2498-2504.
37. Kung Y, Ando N, Doukov TI, Blasiak LC, Bender G, et al. (2012) Visualizing molecular juggling within a B12-dependent methyltransferase complex. Nature 484: 265-269.