The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

Science

Volumn 345, Issue 6201, 2014, Pages 1181-1184

  Denoeud, France ^a,b,c   Carretero Paulet, Lorenzo ^d   Dereeper, Alexis ^e   Droc, Gaëtan ^f   Guyot, Romain ^g   Pietrella, Marco ^h   Zheng, Chunfang ⁱ   Alberti, Adriana ^a   Anthony, François ^e   Aprea, Giuseppe ^h   Aury, Jean Marc ^a   Bento, Pascal ^a   Bernard, Maria ^a   Bocs, Stéphanie ^f   Campa, Claudine ^g   Cenci, Alberto ^e,j   Combes, Marie Christine ^e   Crouzillat, Dominique ^k   Da Silva, Corinne ^a   Daddiego, Loretta ^l   De Bellis, Fabien ^f   Dussert, Stéphane ^g   Garsmeur, Olivier ^f   Gayraud, Thomas ^g   Guignon, Valentin ^j   Jahn, Katharina ^i,m   Jamilloux, Véronique ⁿ   Joët, Thierry ^g   Labadie, Karine ^a   Lan, Tianying ^d,o   Leclercq, Julie ^f   Lepelley, Maud ^k   Leroy, Thierry ^f   Li, Lei Ting ^p   Librado, Pablo ^q   Lopez, Loredana ^l   Muñoz, Adriana ^i,r   Noel, Benjamin ^a   Pallavicini, Alberto ^s   Perrotta, Gaetano ^l   Poncet, Valérie ^g   Pot, David ^f   Priyono, ^t   Rigoreau, Michel ^k   Rouard, Mathieu ^j   Rozas, Julio ^q   Tranchant Dubreuil, Christine ^g   VanBuren, Robert ^p   Zhang, Qiong ^p   Andrade, Alan C ^u   Argout, Xavier ^f   Bertrand, Benoît ^v   De Kochko, Alexandre ^g   Graziosi, Giorgio ^s,w   Henry, Robert J ^x   Jayarama, ^y   Ming, Ray ^p   Nagai, Chifumi ^z   Rounsley, Steve ^aa   Sankoff, David ⁱ   Giuliano, Giovanni ^h   Albert, Victor A ^d   Wincker, Patrick ^a,b,c   Lashermes, Philippe ^e   more..

^a CENTRE NATIONAL DE SÉQUENÇAGE   (France)

^b CNRS   (France)

^c UNIVERSITÉ D EVRY VAL D ESSONNE   (France)

^d UNIVERSITY AT BUFFALO   (United States)

^e INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

^f UMR AGAP   (France)

^g University of Montpellier 2   (France)

^h ENEA C R CASACCIA   (Italy)

ⁱ UNIVERSITY OF OTTAWA   (Canada)

^j BIOVERSITY INTERNATIONAL   (Italy)

^k Nestle Research   (France)

^l UTTRI GENER Genetics and Genomics for Energy and Environment Laboratory ENEA TRISAIA Research Center   (Italy)

^m BIELEFELD UNIVERSITY   (Germany)

ⁿ Centre de recherche de Versailles   (France)

^o CHONGQING UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

^p UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^q UNIVERSITY OF BARCELONA   (Spain)

^r Bldg 142   (United States)

^s UNIVERSITY OF TRIESTE   (Italy)

^t Indonesian Coffee and Cocoa Institute   (Indonesia)

^u EMBRAPA RECURSOS GENÉTICOS E BIOTECNOLOGIA   (Brazil)

^v CIRAD   (France)

^w DNA Analytica Srl   (Italy)

^x UNIVERSITY OF QUEENSLAND   (Australia)

^y Coffee Research Station   (India)

^z HAWAII AGRICULTURE RESEARCH CENTER   (United States)

^aa UNIVERSITY OF ARIZONA   (United States)

more..

Author keywords

[No Author keywords available]

Indexed keywords

ALKALOID; ANTIMALARIAL AGENT; CAFFEINE; FLAVONOID; INDOLE ALKALOID; ISOFLAVONE DERIVATIVE; LINOLEIC ACID; METHYLTRANSFERASE; MICRORNA; MONOAMINE OXIDASE INHIBITOR; POLYUNSATURATED FATTY ACID; QUININE; TERPENE; THEOBROMINE; YOHIMBINE; VEGETABLE PROTEIN;

COFFEE; CONVERGENT EVOLUTION; ECOLOGICAL MODELING; GENE EXPRESSION; GENETIC ANALYSIS; GENETIC DIFFERENTIATION; GENETIC STRUCTURE; GENOME;

ANGIOSPERM; ARABIDOPSIS; ARTICLE; ASTERID; BACTERIAL ARTIFICIAL CHROMOSOME; BIOSYNTHESIS; CACAO; CAMELLIA SINENSIS; CHEMICAL COMPOSITION; CHROMOSOME STRUCTURE; COFFEA CANEPHORA; COFFEE; COMPARATIVE STUDY; CONVERGENT EVOLUTION; ENDOSPERM; EUDICOT; FRUIT; GENE CLUSTER; GENE DUPLICATION; GENE MAPPING; GENE ONTOLOGY; GENE ORDER; GENE STRUCTURE; GENETIC IDENTIFICATION; GENOME ANALYSIS; GENTIANALES; GERMINATION; LONG TERMINAL REPEAT; MAXIMUM LIKELIHOOD METHOD; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE BINDING SITE; PHYLOGENY; PLANT GENE; PLANT GENETICS; PLANT GENOME; PLANT SEED; POLYPLOIDY; PRIORITY JOURNAL; PROTEIN SYNTHESIS; RETROPOSON; RNA SEQUENCE; SOLANACEAE; TOMATO; TRANSPOSON; CLASSIFICATION; GENETICS; MOLECULAR EVOLUTION; PHYSIOLOGY;

ASTERIDS; COFFEA CANEPHORA; LYCOPERSICON ESCULENTUM; MAGNOLIOPHYTA; SOLANACEAE; THEOBROMA CACAO;

CAFFEINE; COFFEA; EVOLUTION, MOLECULAR; GENOME, PLANT; METHYLTRANSFERASES; PHYLOGENY; PLANT PROTEINS;

EID: 84907200661     PISSN: 00368075     EISSN: 10959203     Source Type: Journal    
DOI: 10.1126/science.1255274     Document Type: Article

References (27)

1. E. Robbrecht, J. F. Manen, Syst. Geogr. Plants 76, 85-146 (2006).
2. P. Lashermes et al., Mol. Gen. Genet. 261, 259-266 (1999).
3. M. Noirot et al., Ann. Bot. (London) 92, 709-714 (2003).
4. Materials and methods are available as supplementary materials on Science Online.
5. S. Schaack, C. Gilbert, C. Feschotte, Trends Ecol. Evol. 25, 537-546 (2010).
6. A. Roulin et al., BMC Evol. Biol. 9, 58 (2009).
7. M. El Baidouri et al., Genome Res. 24, 831-838 (2014).
8. C. Moisy, A. H. Schulman, R. Kalendar, J. P. Buchmann, F. Pelsy, Theor. Appl. Genet. 127, 1223-1235 (2014).
9. O. Jaillon et al., Nature 449, 463-467 (2007).
10. S. Sato et al., Nature 485, 635-641 (2012).
11. P. Librado, F. G. Vieira, J. Rozas, Bioinformatics 28, 279-281 (2012).
12. S. H. Hulbert, C. A. Webb, S. M. Smith, Q. Sun, Annu. Rev. Phytopathol. 39, 285-312 (2001).
13. L. McHale, X. Tan, P. Koehl, R. W. Michelmore, Genome Biol. 7, 212 (2006).
14. F. Gleason, R. Chollet, Plant Biochemistry (Jones and Bartlett, Sudbury, MA, 2011).
15. J. A. Nathanson, Science 226, 184-187 (1984).
16. A. Pacheco, J. Pohlan, M. Schulz, Allelopathy J. 21, 39-56 (2008).
17. H. Ashihara, H. Sano, A. Crozier, Phytochemistry 69, 841-856 (2008).
18. A. A. McCarthy, J. G. McCarthy, Plant Physiol. 144, 879-889 (2007).
19. M. Ogawa, Y. Herai, N. Koizumi, T. Kusano, H. Sano, J. Biol. Chem. 276, 8213-8218 (2001).
20. E. Pichersky, E. Lewinsohn, Annu. Rev. Plant Biol. 62, 549-566 (2011).
21. B. Field, A. E. Osbourn, Science 320, 543-547 (2008).
22. M. Matsuno et al., Science 325, 1688-1692 (2009).
23. B. Field et al., Proc. Natl. Acad. Sci. U.S.A. 108, 16116-16121 (2011).
24. J. Zhang, R. Nielsen, Z. Yang, Mol. Biol. Evol. 22, 2472-2479 (2005).
25. D. Villarreal et al., J. Agric. Food Chem. 57, 11321-11327 (2009).
26. S. Dussert, A. Laffargue, A. de Kochko, T. Joët, Phytochemistry 69, 2950-2960 (2008).
27. T. Joët et al., New Phytol. 182, 146-162 (2009).