Direct phase selection of initial phases from single-wavelength anomalous dispersion (SAD) for the improvement of electron density and ab initio structure determination

Acta Crystallographica Section D: Biological Crystallography

Volumn 70, Issue 9, 2014, Pages 2331-2343

  Chen, Chung De ^a,b   Huang, Yen Chieh ^a   Chiang, Hsin Lin ^b   Hsieh, Yin Cheng ^a   Guan, Hong Hsiang ^a   Chuankhayan, Phimonphan ^a   Chen, Chun Jung ^a,b,c  

^a NATIONAL SYNCHROTRON RADIATION RESEARCH CENTER   (Taiwan)

^b NATIONAL TSING HUA UNIVERSITY   (Taiwan)

^c NATIONAL CHENG KUNG UNIVERSITY   (Taiwan)

Author keywords

ab initio structure determination; direct phase selection; electron density improvement

Indexed keywords

CHEMICAL STRUCTURE; ELECTRON; X RAY CRYSTALLOGRAPHY;

CRYSTALLOGRAPHY, X-RAY; ELECTRONS; MOLECULAR STRUCTURE;

EID: 84907014901     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S1399004714013868     Document Type: Article

References (40)

1. Aragão, D., Frazão, C., Sieker, L., Sheldrick, G. M., LeGall, J. & Carrondo, M. A. (2003). Acta Cryst. D59, 644-653.
2. Blundell, T. L. & Johnson, L. N. (1976). Protein Crystallography, p. 177. London: Academic Press.
3. Bond, C. S., Shaw, M. P., Alphey, M. S. & Hunter, W. N. (2001). Acta Cryst. D57, 755-758.
4. Borek, D., Minor, W. & Otwinowski, Z. (2003). Acta Cryst. D59, 2031-2038.
5. Bricogne, G. (1984). Acta Cryst. A40, 410-445.
6. Bricogne, G. (1988). Acta Cryst. A44, 517-545.
7. Cianci, M., Rizkallah, P. J., Olczak, A., Raftery, J., Chayen, N. E., Zagalsky, P. F. & Helliwell, J. R. (2001). Acta Cryst. D57, 1219-1229.
8. Cowtan, K. D. & Main, P. (1993). Acta Cryst. D49, 148-157.
9. Cowtan, K. D. & Main, P. (1996). Acta Cryst. D52, 43-48.
10. Cowtan, K. D. & Zhang, K. Y. J. (1999). Prog. Biophys. Mol. Biol. 72, 245-270.
11. Dauter, Z., Dauter, M., de La Fortelle, E., Bricogne, G. & Sheldrick, G. M. (1999). J. Mol. Biol. 289, 83-92.
12. Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126-2132.
13. Giacovazzo, C. & Siliqi, D. (1997). Acta Cryst. A53, 789-798.
14. Gordon, E. J., Leonard, G. A.,McSweeney, S. & Zagalsky, P. F. (2001). Acta Cryst. D57, 1230-1237.
15. He, Y., Yao, D.-Q., Gu, Y.-X., Lin, Z.-J., Zheng, C.-D. & Fan, H.-F. (2007). Acta Cryst. D63, 793-799.
16. Hendrickson, W. A. & Teeter, M. M. (1981). Nature (London), 290, 107-113.
17. Hsieh, Y.-C., Liu, M.-Y.,Wang, V. C.-C., Chiang, Y.-L., Liu, E.-H.,Wu, W., Chan, S. I. & Chen, C.-J. (2010). Mol. Microbiol. 78, 1101-1116.
18. Hsieh, Y.-C., Wu, Y.-J., Chiang, T.-Y., Kuo, C.-Y., Shrestha, K. L., Chao, C.-F., Huang, Y.-C., Chuankhayan, P., Wu, W., Li, Y.-K. & Chen, C.-J. (2010). J. Biol. Chem. 285, 31603-31615.
19. Huang, Y.-C., Lin, Y.-H., Shih, C.-H., Shih, C.-L., Chang, T. & Chen, C.-J. (2006). Acta Cryst. F62, 94-96.
20. Liu, Z.-J., Vysotski, E. S., Chen, C.-J., Rose, J. P., Lee, J. &Wang, B.-C. (2000). Protein Sci. 9, 2085-2093.
21. McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C. & Read, R. J. (2007). J. Appl. Cryst. 40, 658-674.
22. Murshudov, G. N., Skubák, P., Lebedev, A. A., Pannu, N. S., Steiner, R. A., Nicholls, R. A., Winn, M. D., Long, F. & Vagin, A. A. (2011). Acta Cryst. D67, 355-367.
23. Nagem, R. A. P., Dauter, Z. & Polikarpov, I. (2001). Acta Cryst. D57, 996-1002.
24. Nanao, M. H., Sheldrick, G. M. & Ravelli, R. B. G. (2005). Acta Cryst. D61, 1227-1237.
25. Perrakis, A., Sixma, T. K., Wilson, K. S. & Lamzin, V. S. (1997). Acta Cryst. D53, 448-455.
26. Prince, E., Sjölin, L. & Alenljung, R. (1988). Acta Cryst. A44, 216-222.
27. Refaat, L. S., Tate, C. & Woolfson, M. M. (1996). Acta Cryst. D52, 252-256.
28. Schneider, T. R. & Sheldrick, G. M. (2002). Acta Cryst. D58, 1772-1779.
29. Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.
30. Sheldrick, G. M., Hauptman, H. A., Weeks, C. M., Miller, M. & Usón, I. (2001). International Tables for Macromolecular Crystallography, Vol. F, edited by E. Arnold & M. Rossmann, pp. 333-345. Dordrecht: Kluwer Academic Publishers.
31. Terwilliger, T. C. (2000). Acta Cryst. D56, 965-972.
32. Terwilliger, T. C. (2002). Acta Cryst. D58, 2213-2215.
33. Terwilliger, T. C. (2003). Acta Cryst. D59, 38-44.
34. Uervirojnangkoorn, M., Hilgenfeld, R., Terwilliger, T. C. & Read, R. J. (2013). Acta Cryst. D69, 2039-2049.
35. Usón, I. & Sheldrick, G. M. (1999). Curr. Opin. Struct. Biol. 9, 643-648.
36. Vekhter, Y. (2005). Acta Cryst. D61, 899-902.
37. Wang, B.-C. (1985). Methods Enzymol. 115, 90-112.
38. Wang, J. W., Chen, J. R., Gu, Y. X., Zheng, C. D., Jiang, F., Fan, H. F., Terwilliger, T. C. & Hao, Q. (2004). Acta Cryst. D60, 1244-1253.
39. Winn, M. D. (2011). Acta Cryst. D67, 235-242.
40. Zhang, K. Y. J. & Main, P. (1990). Acta Cryst. A46, 377-381.