Complete nucleotide sequence of pRS218, a large virulence plasmid, that augments pathogenic potential of meningitis-associated Escherichia coli strain RS218

BMC Microbiology

Volumn 14, Issue 1, 2014, Pages

  Wijetunge, Dona Saumya S ^a   Karunathilake, Kurundu Hewage Eranda M ^a   Chaudhari, Atul ^a   Katani, Robab ^a   Dudley, Edward G ^a,b   Kapur, Vivek ^a   Debroy, Chitrita ^a   Kariyawasam, Subhashinie ^a,b  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

^b Center for Molecular Immunology and Infectious Disease   (United States)

Author keywords

DNA sequence; Escherichia coli; Meningitis; Neonates; Plasmid; Virulence

Indexed keywords

ANIMAL EXPERIMENT; ANIMAL MODEL; ARTICLE; BACTERIAL GROWTH; BACTERIAL MENINGITIS; BACTERIAL STRAIN; BACTERIAL VIRULENCE; BACTERIUM ISOLATE; BLOOD BRAIN BARRIER; BRAIN TISSUE; CAPILLARY ENDOTHELIAL CELL; CEREBROSPINAL FLUID; CONTROLLED STUDY; CYSTITIS; ESCHERICHIA COLI; GENETIC LOAD; HUMAN; HUMAN CELL; HUMAN TISSUE; INTESTINE EPITHELIUM; MICROBIAL COMMUNITY; MORTALITY; NEWBORN INFECTION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PATHOGENESIS; PLASMID; RAT; WILD TYPE; ANIMAL; CHEMISTRY; DNA SEQUENCE; GENE ORDER; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; NEWBORN; SEQUENCE HOMOLOGY; SPRAGUE DAWLEY RAT; SURVIVAL; VIRULENCE;

ESCHERICHIA COLI;

BACTERIAL DNA; VIRULENCE FACTOR;

ANIMALS; CEREBROSPINAL FLUID; DNA, BACTERIAL; ESCHERICHIA COLI; GENE ORDER; HUMANS; INFANT, NEWBORN; MENINGITIS, ESCHERICHIA COLI; MOLECULAR SEQUENCE DATA; PLASMIDS; RATS, SPRAGUE-DAWLEY; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SURVIVAL ANALYSIS; VIRULENCE; VIRULENCE FACTORS;

EID: 84906964636     PISSN: None     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/s12866-014-0203-9     Document Type: Article

References (41)

1. 4 million neonatal deaths: when? Where? Why? JE Lawn, S Cousens, J Zupan, Lancet 2005 365 9462 891 900 10.1016/S0140-6736(05)71048-5 15752534
2. Global, regional, and national causes of child mortality: an updated systematic analysis for 2010 with time trends since 2000. L Liu, HL Johnson, S Cousens, J Perin, S Scott, JE Lawn, I Rudan, H Campbell, R Cibulskis, M Li, C Mathers, R Black, Lancet 2012 379 9832 2151 2161 10.1016/S0140-6736(12)60560-1 22579125
3. Meningitis in the newborn-a 14 year review. AH Bell, D Brown, HL Halliday, G McClure, M McReid, Arch Dis Child 1989 64 6 873 874 10.1136/adc.64.6.873 2774622
4. Strategy of Escherichia coli for crossing the blood-brain barrier. KS Kim, J Infect Dis 2002 186 Supplement 2 220 S224 10.1086/344284 12424701
5. Pathogenesis of bacterial meningitis: from bacteraemia to neuronal injury. KS Kim, Nat Rev Neurosci 2003 4 5 376 385 10.1038/nrn1103 12728265
6. Evidence for a common molecular origin of the capsule gene loci in Gram-negative bacteria expressing group II capsular polysaccharides. M Frosch, U Edwards, K Bousset, B Krauße, C Weisgerber, Mol Microbiol 1991 5 5 1251 1263 10.1111/j.1365-2958.1991.tb01899.x 1659649
7. Bacterial meningitis and the newborn infant. A Pong, JS Bradley, Infect Dis Clin North Am 1999 13 3 711 733 10.1016/S0891-5520(05)70102-1 10470563
8. Neonatal bacterial meningitis. RA Polin, MC Harris, Sem Neonatol 2001 6 2 157 172 10.1053/siny.2001.0045
9. Horizontal gene transfer accelerates genome innovation and evolution. R Jain, MC Rivera, JE Moore, JA Lake, Mol Biolo Evol 2003 20 10 1598 1602 10.1093/molbev/msg154
10. Pathogenomics of the virulence plasmids of Escherichia coli. TJ Johnson, LK Nolan, Microbiol Mol Biol Rev 2009 73 4 750 774 10.1128/MMBR.00015-09 19946140
11. Plasmids and the spread of resistance. A Carattoli, Intl J Med Microbiol 2013 303 6-7 298 304 10.1016/j.ijmm.2013.02.001
12. Virulence plasmid harbored by uropathogenic Escherichia coli functions in acute stages of pathogenesis. CK Cusumano, CS Hung, SL Chen, SJ Hultgren, Infect Immun 2010 78 4 1457 1467 10.1128/IAI.01260-09 20123719
13. Complete sequence of pEC14-114, a highly conserved IncFIB/FIIA plasmid associated with uropathogenic Escherichia coli cystitis strains. C DebRoy, MS Sidhu, U Sarker, BM Jayarao, AL Stell, NP Bell, TJ Johnson, Plasmid 2010 63 1 53 60 10.1016/j.plasmid.2009.10.003 19887083
14. The plasmid of Escherichia coli Strain S88 (O45:K1:H7) that causes neonatal meningitis is closely related to avian pathogenic E. coli plasmids and is associated with high-level bacteremia in a neonatal rat meningitis model. C Peigne, P Bidet, F Mahjoub-Messai, C Plainvert, V Barbe, C Médigue, E Frapy, X Nassif, E Denamur, E Bingen, S Bonacorsi, Infect Immun 2009 77 6 2272 2284 10.1128/IAI.01333-08 19307211
15. Lu S, Zhang X, Zhu Y, Kim KS, Yang J, Jin Q: Complete genome sequence of the neonatal-meningitis-associated Escherichia coli strain CE10. J Bacteriol 2011, 193 (24):7005.
16. The K1 capsular polysaccharide of Escherichia coli. RP Silver, W Aaronson, WF Vann, Rev Infect Dis 1988 10 2 282 S286 10.1093/cid/10.Supplement-2.S282 3055198
17. Comparative analysis of plasmids and some metabolic characteristics of Escherichia coli K1 from diseased and healthy individuals. RP Silver, W Aaronson, A Sutton, R Schneerson, Infect Immun 1980 29 1 200 206 6995336
18. Avian-pathogenic Escherichia coli strains are similar to neonatal meningitis E. coli strains and are able to cause meningitis in the rat model of human disease. KA Tivendale, CM Logue, S Kariyawasam, D Jordan, A Hussein, G Li, Y Wannemuehler, LK Nolan, Infect Immun 2010 78 8 3412 3419 10.1128/IAI.00347-10 20515929
19. Sodium-dependent movement of covalently bound FMN Residue(s) in Na+-Translocating NADH: quinone oxidoreductase. MI Verkhovsky, AV Bogachev, AV Pivtsov, YV Bertsova, MV Fedin, DA Bloch, LV Kulik, Biochemistry 2012 51 27 5414 5421 10.1021/bi300322n 22697411
20. Purification and characterization of YihA, an essential GTP-binding protein from Escherichia coli. IE Lehoux, MJ Mazzulla, A Baker, CM Petit, Protein Expr Purif 2003 30 2 203 209 10.1016/S1046-5928(03)00107-4 12880769
21. Glucose-1-phosphate utilization by Listeria monocytogenes is PrfA dependent and coordinately expressed with virulence factors. MT Ripio, K Brehm, M Lara, M Suárez, JA Vázquez-Boland, J Bacteriol 1997 179 22 7174 7180 9371468
22. Lytic transglycosylases: bacterial space-making autolysins. E Scheurwater, CW Reid, AJ Clarke, Intl J Biochem Cell Biol 2008 40 4 586 591 10.1016/j.biocel.2007.03.018
23. Complete genome sequence of the wild-type commensal Escherichia coli strain SE15, belonging to phylogenetic group B2. H Toh, K Oshima, A Toyoda, Y Ogura, T Ooka, H Sasamoto, S-H Park, S Iyoda, K Kurokawa, H Morita, K Itoh, TD Taylor, T Hayashi, M Hattori, J Bacteriol 2010 192 4 1165 1166 10.1128/JB.01543-09 20008064
24. Entire sequence of the colonization factor coli surface antigen 6-encoding plasmid pCss165 from an enterotoxigenic Escherichia coli clinical isolate. T Wajima, S Sabui, S Kano, T Ramamurthy, NS Chatterjee, T Hamabata, Plasmid 2013 70 3 345 352 10.1016/j.plasmid.2013.07.006
25. Zhang W, Bielaszewska M, Kunsmann L, Mellmann A, Bauwens A, Köck R, Kossow A, Anders A, Gatermann S, Karch H: Lability of the pAA virulence plasmid in Escherichia coli O104:H4: implications for virulence in humans. PLoS One 2013, 8 (6):e66717.
26. Genotypic and phenotypic traits that distinguish neonatal meningitis-associated Escherichia coli from fecal E. coli isolates of healthy human hosts. CM Logue, C Doetkott, P Mangiamele, YM Wannemuehler, TJ Johnson, KA Tivendale, G Li, JS Sherwood, LK Nolan, Appl Environ Microbiol 2012 78 16 5824 5830 10.1128/AEM.07869-11 22706051
27. Resistance transfer agents in Shigella. R Nakaya, A Nakamura, Y Murata, Biochem Biophys Res Commun 1960 3 654 659 10.1016/0006-291X(60)90081-4 13727669
28. Metallic copper as an antimicrobial surface. G Grass, C Rensing, M Solioz, Appl Environ Microbiol 2011 77 5 1541 1547 10.1128/AEM.02766-10 21193661
29. A Salmonella typhimurium genetic locus which confers copper tolerance on copper-sensitive mutants of Escherichia coli. SD Gupta, HC Wu, PD Rick, J Bacteriol 1997 179 16 4977 4984 9260936
30. Identification and cloning of a novel plasmid-encoded enterotoxin of enteroinvasive Escherichia coli and Shigella strains. JP Nataro, J Seriwatana, A Fasano, DR Maneval, LD Guers, F Noriega, F Dubovsky, MM Levine, JG Morris, Infect Immun 1995 63 12 4721 4728 7591128
31. Application of signature-tagged mutagenesis for identification of Escherichia coli K1 genes that contribute to invasion of human brain microvascular endothelial cells. JL Badger, CA Wass, SJ Weissman, KS Kim, Infect Immun 2000 68 9 5056 5061 10.1128/IAI.68.9.5056-5061.2000 10948125
32. Escherichia coli invasion of brain microvascular endothelial cells in vitro and in vivo: molecular cloning and characterization of invasion gene ibe10. SH Huang, C Wass, Q Fu, NV Prasadarao, M Stins, KS Kim, Infec Immun 1995 63 11 4470 4475
33. Sambrook J, Russell DW: Molecular cloning: a laboratory manual. In, Volume 1. 4th edition. New York: Cold Spring Harbor Laboratory Press; 2012.
34. Aziz R, Bartels D, Best A, DeJongh M, Disz T, Edwards R, Formsma K, Gerdes S, Glass E, Kubal M, Meyer F, Olsen G, Olson R, Osterman A, Overbeek R, McNeil L, Paarmann D, Paczian T, Parrello B, Pusch G, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O: The RAST server: rapid annotations using subsystems technology. BMC Genomics 2008, 9 (1):75.
35. Mauve: multiple alignment of conserved genomic sequence with rearrangements. ACE Darling, B Mau, FR Blattner, NT Perna, Genome Res 2004 14 7 1394 1403 10.1101/gr.2289704 15231754
36. Building phylogenetic trees from molecular data with MEGA. BG Hall, Mol Biol Evol 2013 30 5 1229 1235 10.1093/molbev/mst012 23486614
37. The neighbor-joining method: a new method for reconstructing phylogenetic trees. N Saitou, M Nei, Mol Biol Evol 1987 4 4 406 425 3447015
38. Extended virulence genotypes of Escherichia coli strains from patients with urosepsis in relation to phylogeny and host compromise. JR Johnson, AL Stell, J Infect Dis 2000 181 1 261 272 10.1086/315217 10608775
39. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. KA Datsenko, BL Wanner, Proc Natl Acad Sci 2000 97 12 6640 6645 10.1073/pnas.120163297 10829079
40. Isolation and curing of the Klebsiella pneumoniae large indigenous plasmid using sodium dodecyl sulphate. M El-Mansi, KJ Anderson, CA Inche, LK Knowles, DJ Platt, Res Microbiol 2000 151 3 201 208 10.1016/S0923-2508(00)00140-6 10865947
41. An IncI1 plasmid contributes to the adherence of the atypical enteroaggregative Escherichia coli Strain C1096 to cultured cells and abiotic surfaces. EG Dudley, C Abe, J-M Ghigo, P Latour-Lambert, JC Hormazabal, JP Nataro, Infect Immun 2006 74 4 2102 2114 10.1128/IAI.74.4.2102-2114.2006 16552039