Analyses of flooding tolerance of soybean varieties at emergence and varietal differences in their proteomes

Phytochemistry

Volumn 106, Issue , 2014, Pages 25-36

  Nanjo, Yohei ^a   Jang, Hee Young ^b   Kim, Hong Sig ^b   Hiraga, Susumu ^a   Woo, Sun Hee ^b   Komatsu, Setsuko ^a  

^a NATIONAL INSTITUTE OF CROP SCIENCE   (Japan)

^b Chungbuk National University   (South Korea)

Author keywords

Fabaceae; Flooding tolerance; Glycine gracilis; Glycine max; Proteomics; Soybean; Varietal difference

Indexed keywords

FABACEAE; GLYCINE (ANGIOSPERM); GLYCINE MAX;

PROTEOME; RNA BINDING PROTEIN; VEGETABLE PROTEIN;

CLASSIFICATION; FLOODING; PHYSIOLOGICAL STRESS; PHYSIOLOGY; SOYBEAN;

FLOODS; PLANT PROTEINS; PROTEOME; RNA-BINDING PROTEINS; SOYBEANS; STRESS, PHYSIOLOGICAL;

EID: 84906944896     PISSN: 00319422     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.phytochem.2014.06.017     Document Type: Article

References (38)

1. J. Bailey-Serres, T. Fukao, D.J. Gibbs, M.J. Holdsworth, S.C. Lee, F. Licausi, P. Perata, L.A. Voesenek, and J.T. van Dongen Making sense of low oxygen sensing Trends Plant Sci. 17 2012 129 138
2. G. Boru, T. Vantoai, J. Alves, D. Hua, and M. Knee Responses of soybean to oxygen deficiency and elevated root-zone carbon dioxide concentration Ann. Bot. 91 2003 447 453 (Pubitemid 36260943)
3. C. Branco-Price, K.A. Kaiser, C.J.H. Jang, C.K. Larive, and J. Bailey-Serres Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana Plant J. 56 2008 743 755
4. H. Chida, T. Kokuryu, and S. Shimada The storage method for maintaining germination ability of moisture-adjucted soybean seeds Jpn. J. Crop Sci. 78 2009 219 224
5. J.W. Cho Differences in flood-stress tolerance among sprout soybean cultivars Korean J. Crop Sci. 58 2013 190 195
6. B. Cornelious, P. Chen, Y. Chen, N. de Leon, J.G. Shannon, and D. Wang Identification of QTLs underlying water-logging tolerance in soybean Mol. Breed. 16 2005 103 112 (Pubitemid 41569999)
7. J. Gibbs, and H. Greenway Mechanisms of anoxia tolerance in plants. I. Growth, survival and anaerobic catabolism Funct. Plant Biol. 30 2003 1 47 (Pubitemid 36224773)
8. R.J. Grainger, and J.D. Beggs Prp8 protein: at the heart of the spliceosome RNA 11 2005 533 557 (Pubitemid 40594322)
9. A. Hashiguchi, K. Sakata, and S. Komatsu Proteome analysis of early-stage soybean seedlings under flooding stress J. Proteome Res. 8 2009 2058 2069
10. M.B. Jackson, and T.D. Colmer Response and adaptation by plants to flooding stress Ann. Bot. 96 2005 501 505 (Pubitemid 41298043)
11. C.Y. Kim, J. Bove, and S.M. Assmann Overexpression of wound-responsive RNA-binding proteins induces leaf senescence and hypersensitive-like cell death New Phytol. 180 2008 57 70
12. T. Kokuryu, H. Chida, S. Shimada, S. Kato, H. Hamaguchi, and J. Tazawa Effects of soil surface intensity and soil microorganisms on emergence and establishment of moisture-adjusted soybean seeds Jpn. J. Crop Sci. 79 2010 476 483
13. S. Komatsu, C. Han, Y. Nanjo, M. Altaf-Un-Nahar, K. Wang, Dongli He, and P. Yang Label-free quantitative proteomic analysis of abscisic acid effect in early-stage soybean under flooding J. Proteome Res. 8 2013 4766 4778
14. S. Komatsu, Y. Nanjo, and M. Nishimura Proteomic analysis of the flooding tolerance mechanism in mutant soybean J. Proteomics 79 2013 231 250
15. S. Komatsu, R. Yamamoto, Y. Nanjo, Y. Mikami, H. Yunokawa, and K. Sakata A comprehensive analysis of the soybean genes and proteins expressed under flooding stress using transcriptome and proteome techniques J. Proteome Res. 8 2009 4766 4778
16. M.H.L. Lambermon, Y. Fu, D.A. Wieczorek Kirk, M. Dupasquier, W. Filipowicz, and Z.J. Lorković UBA1 and UBA2, two proteins that interact with UBP1, a multifunctional effector of pre-mRNA maturation in plants Mol. Cell. Biol. 22 2002 4346 4357 (Pubitemid 34556601)
17. M.H.L. Lambermon, G.G. Simpson, D.A. Wieczorek Kirk, M. Hemmings-Mieszczak, U. Klahre, and W. Filipowicz UBP1, a novel hnRNP-like protein that functions at multiple steps of higher plant nuclear pre-mRNA maturation EMBO J. 19 2000 1638 1649 (Pubitemid 30182170)
18. S.K. Min, X. Zhang, F.W. Zwiers, and G.C. Hegerl Human contribution to more-intense precipitation extremes Nature 470 2011 378 381
19. L. Mommer, J.P.M. Lenssen, H. Huber, E.J.W. Visser, and H.D. Kroon Ecophysiological determinants of plant performance under flooding: a comparative study of seven plant families J. Ecol. 94 2006 1117 1129 (Pubitemid 44511001)
20. R.H.M. Nabben, C.W.P.M. Blom, and L.A.C.J. Voesenek Resistance to complete submergence in Rumex species with different life histories: the influence of plant size and light New Phytol. 144 1999 313 321
21. T. Nakamura, R. Yamamoto, S. Hiraga, N. Nakayama, K. Okazaki, H. Takahashi, H. Uchimiya, and S. Komatsu Evaluation of metabolite alteration under flooding stress in soybeans Jpn. Agric. Res. Q. 46 2012 237 248
22. N. Nakayama, S. Hashmoto, S. Shimada, M. Takahashi, Y.H. Kim, T. Oya, and J. Arihara The effect of flooding stress at the germination stage on the growth of soybean in relation to initial seed moisture content Jpn. J. Crop Sci. 73 2004 323 329 (Pubitemid 39270571)
23. N. Nakayama, S. Shimada, M. Takahashi, Y.H. Kim, and J. Arihara Effects of water-absorbing rate of seed on flooding injury in soybean Jpn. J. Crop Sci. 74 2005 325 329 (Pubitemid 43020347)
24. Y. Nanjo, K. Maruyama, H. Yasue, K. Yamaguchi-Shinozaki, K. Shinozaki, and S. Komatsu Transcriptional responses to flooding stress in roots including hypocotyl of soybean seedlings Plant Mol. Biol. 77 2011 129 144
25. Y. Nanjo, T. Nakamura, and S. Komatsu Identification of indicator proteins associated with flooding injury in soybean seedlings using label-free quantitative proteomics J. Proteome Res. 12 2013 4785 4798
26. Y. Nanjo, L. Skultety, L. Uváčková, K. Klubicová, M. Hajduch, and S. Komatsu Mass spectrometry-based analysis of proteomic changes in the root tips of flooded soybean seedlings J. Proteome Res. 11 2012 372 385
27. D.M. Oosterhuis, H.D. Scott, R.E. Hampton, and S.D. Wullschleger Physiological responses of two soybean [Glycine max L. Merr] cultivars to short term flooding Environ. Exp. Bot. 30 1990 85 92
28. P. Pall, T. Aina, D. Stone, P.A. Stott, T. Nozawa, A.G.J. Hilberts, D. Lohmann, and M.R. Allen Anthropogenic greenhouse gas contribution to flood risk in England and Wales in autumn 2000 Nature 470 2011 382 385
29. D.A. Russell, D.M.L. Wong, and M.M. Sachs The anaerobic responses of soybean Plant Physiol. 92 1990 401 407
30. T. Sayama, T. Nakazaki, G. Ishikawa, K. Yagasaki, N. Yamada, N. Hirota, K. Hirata, T. Yoshikawa, H. Saito, M. Teraishi, Y. Okumoto, T. Tsukiyama, and T. Tanisaka QTL analysis of seed-flooding tolerance in soybean Glycine max [L.] Merr Plant Sci. 176 2009 514 521
31. Q. Schiermeier Increased flood risk linked to global warming Nature 470 2011 316
32. J. Schmutz, S.B. Cannon, J. Schlueter, J. Ma, T. Mitros, W. Nelson, D.L. Hyten, Q. Qijian Song, and J.J. Thelen et al. Genome sequence of the palaeopolyploid soybean Nature 46 2010 178 183
33. B.G. Tamang, J.O. Magliozzi, M.A.S. Maroof, and T. Fukao Physiological and transcriptomic characterization of submergence and reoxygenation responses in soybean seedlings Plant, Cell Environ. 2014 10.1111/pce.12277
34. I. Tzafrir, R. Pena-Muralla, A. Dickerman, M. Berg, R. Rogers, S. Hutchens, T.C. Sweeney, J. McElver, G. Aux, D. Patton, and D. Meinke Identification of genes required for embryo development in Arabidopsis Plant Physiol. 135 2004 1206 1220 (Pubitemid 39009371)
35. B. Usadel, A. Nagel, O. Thimm, H. Redestig, O.E. Blaesing, N. Palacios-Rofas, J. Selbig, J. Hannemann, M.C. Piques, D. Steinhauser, W.R. Scheible, Y. Gibon, R. Morcuende, D. Weicht, S. Meyer, and M. Stitt Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses Plant Physiol. 138 2005 1195 1204 (Pubitemid 43142069)
36. T.T. Van Toai, S.K. St. Martin, K. Chase, G. Boru, V. Schnipke, A.F. Schmitthenner, and K.G. Lark Identification of a QTL associated with tolerance of soybean to soil waterlogging Crop Sci. 41 2001 1247 1252 (Pubitemid 32773825)
37. L.A.C.J. Voesenek, and R. Sasidharan Ethylene- and oxygen signaling-drive plant survival during flooding Plant Biol. 15 2013 426 435
38. A. Ziemienowicz, D. Haasen, D. Staiger, and T. Merkle Arabidopsis transportin1 is the nuclear import receptor for the circadian clock-regulated RNA-binding protein AtGRP7 Plant Mol. Biol. 53 2003 201 212 (Pubitemid 38105649)