메뉴 건너뛰기




Volumn 190, Issue , 2014, Pages 61-65

Multilocus variable-number of tandem repeat analysis (MLVA) for Clostridium tyrobutyricum strains isolated from cheese production environment

Author keywords

Cheese; Clostridium tyrobutyricum; MLVA

Indexed keywords

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEESE; CLOSTRIDIUM TYROBUTYRICUM; FOOD CONTAMINATION; FOOD INDUSTRY; MILK; MULTILOCUS VARIABLE NUMBER OF TANDEM REPEAT; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; SILAGE; VARIABLE NUMBER OF TANDEM REPEAT; FERMENTATION; FOOD CONTROL; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; PROCEDURES;

EID: 84906831579     PISSN: 01681605     EISSN: 18793460     Source Type: Journal    
DOI: 10.1016/j.ijfoodmicro.2014.08.022     Document Type: Article
Times cited : (16)

References (34)
  • 2
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: a program to analyze DNA sequences
    • Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999, 27:573-580.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 573-580
    • Benson, G.1
  • 3
    • 0005296563 scopus 로고
    • Detection and enumeration of clostridial spores related to cheese quality-classical and new methods
    • International Dairy Federation, Brussels, International Dairy Federation (Ed.) Methods of detection and prevention of anaerobic spore formers in relation to the quality of cheese
    • Bergeres J.L., Sivela S. Detection and enumeration of clostridial spores related to cheese quality-classical and new methods. Bulletin of the International Dairy Federation, No. 251 1990, 18-23. International Dairy Federation, Brussels. International Dairy Federation (Ed.).
    • (1990) Bulletin of the International Dairy Federation, No. 251 , pp. 18-23
    • Bergeres, J.L.1    Sivela, S.2
  • 4
    • 37249051355 scopus 로고    scopus 로고
    • Genetic diversity of Clostridiumperfringens isolated from healthy broiler chickens at a commercial farm
    • Chalmers G., Martin S.W., Hunter D.B., Prescott J.F., Weber L.J., Boerlin P. Genetic diversity of Clostridiumperfringens isolated from healthy broiler chickens at a commercial farm. Vet. Microbiol. 2008, 127:116-127.
    • (2008) Vet. Microbiol. , vol.127 , pp. 116-127
    • Chalmers, G.1    Martin, S.W.2    Hunter, D.B.3    Prescott, J.F.4    Weber, L.J.5    Boerlin, P.6
  • 6
    • 0348111478 scopus 로고    scopus 로고
    • The late blowing in cheese: a new molecular approach based on PCR and DGGE to study the microbia1 ecology of the alteration process
    • Cocolin L., Innocente N., Biasutti M., Comi G. The late blowing in cheese: a new molecular approach based on PCR and DGGE to study the microbia1 ecology of the alteration process. Int. J. Food Microbiol. 2004, 90:83-91.
    • (2004) Int. J. Food Microbiol. , vol.90 , pp. 83-91
    • Cocolin, L.1    Innocente, N.2    Biasutti, M.3    Comi, G.4
  • 7
    • 84864543854 scopus 로고    scopus 로고
    • Identification of Clostridium beijerinckii, Cl. butyricum, Cl. sporogenes, Cl. tyrobutyricum isolated from silage, raw milk and hard cheese by a multiplex PCR assay
    • Cremonesi P., Vanoni L., Silvetti T., Morandi S., Brasca M. Identification of Clostridium beijerinckii, Cl. butyricum, Cl. sporogenes, Cl. tyrobutyricum isolated from silage, raw milk and hard cheese by a multiplex PCR assay. J. Dairy Res. 2012, 79:318-323.
    • (2012) J. Dairy Res. , vol.79 , pp. 318-323
    • Cremonesi, P.1    Vanoni, L.2    Silvetti, T.3    Morandi, S.4    Brasca, M.5
  • 8
    • 84875642872 scopus 로고    scopus 로고
    • Genotyping of dairy Bacillus licheniformis isolates by high resolution melt analysis of multiple variable number tandem repeat loci
    • Dhakal R., Chauhan K., Seale R.B., Deeth H.C., Pillidge C.J., Powell I.B., Craven H., Turner M.S. Genotyping of dairy Bacillus licheniformis isolates by high resolution melt analysis of multiple variable number tandem repeat loci. Food Microbiol. 2013, 34:344-351.
    • (2013) Food Microbiol. , vol.34 , pp. 344-351
    • Dhakal, R.1    Chauhan, K.2    Seale, R.B.3    Deeth, H.C.4    Pillidge, C.J.5    Powell, I.B.6    Craven, H.7    Turner, M.S.8
  • 10
    • 84862704877 scopus 로고    scopus 로고
    • Enhanced PFGE protocol to study the genomic diversity of Clostridium spp. isolated from Manchego cheeses with late blowing defect
    • Garde S., Gaya P., Arias R., Nunez M. Enhanced PFGE protocol to study the genomic diversity of Clostridium spp. isolated from Manchego cheeses with late blowing defect. Food Control 2012, 28:392-399.
    • (2012) Food Control , vol.28 , pp. 392-399
    • Garde, S.1    Gaya, P.2    Arias, R.3    Nunez, M.4
  • 11
    • 0028808170 scopus 로고
    • A direct PCR detection method for Clostridium tyrobutyricum spores in up to 100milliliters of raw milk
    • Herman L.M., De Block J.H., Waes G.M. A direct PCR detection method for Clostridium tyrobutyricum spores in up to 100milliliters of raw milk. Appl. Environ. Microbiol. 1995, 61:4141-4146.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 4141-4146
    • Herman, L.M.1    De Block, J.H.2    Waes, G.M.3
  • 12
    • 0344447097 scopus 로고    scopus 로고
    • Genomic analysis of Clostridium botulinum group ii by pulsed-field gel electrophoresis
    • Hielm S., Bjorkroth J., Hyytia E., Korkeala H. Genomic analysis of Clostridium botulinum group ii by pulsed-field gel electrophoresis. Appl. Environ. Microbiol. 1998, 64:703-708.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 703-708
    • Hielm, S.1    Bjorkroth, J.2    Hyytia, E.3    Korkeala, H.4
  • 13
    • 0023738045 scopus 로고
    • Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity
    • Hunter P.R., Gaston M.A. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J. Clin. Microbiol. 1988, 26:2465-2466.
    • (1988) J. Clin. Microbiol. , vol.26 , pp. 2465-2466
    • Hunter, P.R.1    Gaston, M.A.2
  • 14
    • 0032497311 scopus 로고    scopus 로고
    • Differentiation of lactate-fermenting, gas-producing Clostridium spp. isolated from milk
    • Ingham S.C., Hassler J.R., Tsai Y.W., Ingham B.H. Differentiation of lactate-fermenting, gas-producing Clostridium spp. isolated from milk. Int. J. Food Microbiol. 1998, 43:173-183.
    • (1998) Int. J. Food Microbiol. , vol.43 , pp. 173-183
    • Ingham, S.C.1    Hassler, J.R.2    Tsai, Y.W.3    Ingham, B.H.4
  • 15
    • 84997831632 scopus 로고    scopus 로고
    • Genome sequence of Clostridium tyrobutyricum ATCC 25755, a butyric acid-overproducing strain
    • Jiang L., Zhu L., Xu X., Li Y., Li S., Huang H. Genome sequence of Clostridium tyrobutyricum ATCC 25755, a butyric acid-overproducing strain. Genome Announc. 2013, 1:e00308-e00313.
    • (2013) Genome Announc. , vol.1
    • Jiang, L.1    Zhu, L.2    Xu, X.3    Li, Y.4    Li, S.5    Huang, H.6
  • 17
    • 0028129319 scopus 로고
    • Identification of Clostridium tyrobutyricum and related species using sugar fermentation, organic acid formation and DNA probes based on specific 16S rRNA sequences
    • Klijn N., Bovie C., Dommes J., Hoolwerf J.D., Van Der Waals C.B., Weerkamp A.H., Nieuwenhof F.F.J. Identification of Clostridium tyrobutyricum and related species using sugar fermentation, organic acid formation and DNA probes based on specific 16S rRNA sequences. Syst. Appl. Microbiol. 1994, 17:249-256.
    • (1994) Syst. Appl. Microbiol. , vol.17 , pp. 249-256
    • Klijn, N.1    Bovie, C.2    Dommes, J.3    Hoolwerf, J.D.4    Van Der Waals, C.B.5    Weerkamp, A.H.6    Nieuwenhof, F.F.J.7
  • 18
    • 0029154174 scopus 로고
    • Identification of Clostridium tyrobutyricum as the causative agent of late blowing in cheese by species-specific PCR amplification
    • Klijn N., Nieuwenhof F.F., Hoolwerf J.D., van der Waals C.B., Weerkamp A.H. Identification of Clostridium tyrobutyricum as the causative agent of late blowing in cheese by species-specific PCR amplification. Appl. Environ. Microbiol. 1995, 61:2919-2924.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 2919-2924
    • Klijn, N.1    Nieuwenhof, F.F.2    Hoolwerf, J.D.3    van der Waals, C.B.4    Weerkamp, A.H.5
  • 19
    • 0031058904 scopus 로고    scopus 로고
    • Identification of Clostridium butyricum, Clostridium sporogenes and Clostridium tyrobutyricum by hybridization with 16S rRNA-targeted oligonucleotide probes
    • Knabel S., Tatzel R., Ludwig W., Wallnofer P.R. Identification of Clostridium butyricum, Clostridium sporogenes and Clostridium tyrobutyricum by hybridization with 16S rRNA-targeted oligonucleotide probes. Syst. Appl. Microbiol. 1997, 20:85-88.
    • (1997) Syst. Appl. Microbiol. , vol.20 , pp. 85-88
    • Knabel, S.1    Tatzel, R.2    Ludwig, W.3    Wallnofer, P.R.4
  • 20
    • 12244299870 scopus 로고    scopus 로고
    • Development and validation of PCR primers to assess the diversity of Clostridium spp. in cheese by temporal temperature gradient gel electrophoresis
    • Le Bourhis A.G., Saunier K., Dore J., Carlier J.P., Chamba J.F., Popoff M.R., Tholozan J.L. Development and validation of PCR primers to assess the diversity of Clostridium spp. in cheese by temporal temperature gradient gel electrophoresis. Appl. Environ. Microbiol. 2005, 71:29-38.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 29-38
    • Le Bourhis, A.G.1    Saunier, K.2    Dore, J.3    Carlier, J.P.4    Chamba, J.F.5    Popoff, M.R.6    Tholozan, J.L.7
  • 21
    • 33846003873 scopus 로고    scopus 로고
    • Contribution of C. beijerinckii and C. sporogenes in association with C. tyrobutyricum to the butyric fermentation in Emmental type cheese
    • Le Bourhis A.G., Dore J., Carlier J.P., Chamba J.F., Popoff M.R., Tholozan J.L. Contribution of C. beijerinckii and C. sporogenes in association with C. tyrobutyricum to the butyric fermentation in Emmental type cheese. Int. J. Food Microbiol. 2007, 113:154-163.
    • (2007) Int. J. Food Microbiol. , vol.113 , pp. 154-163
    • Le Bourhis, A.G.1    Dore, J.2    Carlier, J.P.3    Chamba, J.F.4    Popoff, M.R.5    Tholozan, J.L.6
  • 22
    • 0031001846 scopus 로고    scopus 로고
    • Long-chain polyphosphates inhibit growth of Clostridium tyrobutyricum in processed cheese spreads
    • Loessner M.J., Maier S.K., Schiwek P., Scherer S. Long-chain polyphosphates inhibit growth of Clostridium tyrobutyricum in processed cheese spreads. J. Food Prot. 1997, 60:493-498.
    • (1997) J. Food Prot. , vol.60 , pp. 493-498
    • Loessner, M.J.1    Maier, S.K.2    Schiwek, P.3    Scherer, S.4
  • 23
    • 22144489176 scopus 로고    scopus 로고
    • Comparison of multiple-locus variable-number tandem-repeat analysis with pulsed-field gel electrophoresis, spa-typing, and multilocus sequence typing for clonal characterization of Staphylococcus aureus isolates
    • Malachowa N., Sabat A., Gniadkowski M., Krzyszton-Russjan J., Empel J., Miedzobrodzki J., Kosowska-Shick K., Appelbaum P.C., Hryniewicz W. Comparison of multiple-locus variable-number tandem-repeat analysis with pulsed-field gel electrophoresis, spa-typing, and multilocus sequence typing for clonal characterization of Staphylococcus aureus isolates. J. Clin. Microbiol. 2005, 43:3095-3100.
    • (2005) J. Clin. Microbiol. , vol.43 , pp. 3095-3100
    • Malachowa, N.1    Sabat, A.2    Gniadkowski, M.3    Krzyszton-Russjan, J.4    Empel, J.5    Miedzobrodzki, J.6    Kosowska-Shick, K.7    Appelbaum, P.C.8    Hryniewicz, W.9
  • 24
    • 77957162601 scopus 로고    scopus 로고
    • Metabolism of residual lactose and of lactate and citrate
    • Elsevier, London, P.F. Fox, P.L.H. McSweeney, T.M. Cogan, T.P. Guinee (Eds.)
    • McSweeney P.L.H., Fox P.F. Metabolism of residual lactose and of lactate and citrate. Cheese: Chemistry, Physics and Microbiology 2004, vol. 1:365-366. Elsevier, London. third ed. P.F. Fox, P.L.H. McSweeney, T.M. Cogan, T.P. Guinee (Eds.).
    • (2004) Cheese: Chemistry, Physics and Microbiology , vol.1 , pp. 365-366
    • McSweeney, P.L.H.1    Fox, P.F.2
  • 26
    • 33847642175 scopus 로고    scopus 로고
    • Development and application of multiple-locus variable number of tandem repeat analysis (MLVA) to subtype a collection of Listeria monocytogenes
    • Murphy M., Corcoran D., Buckley J.F., O'Mahony M., Whyte P., Fanning S. Development and application of multiple-locus variable number of tandem repeat analysis (MLVA) to subtype a collection of Listeria monocytogenes. Int. J. Food Microbiol. 2007, 115:187-194.
    • (2007) Int. J. Food Microbiol. , vol.115 , pp. 187-194
    • Murphy, M.1    Corcoran, D.2    Buckley, J.F.3    O'Mahony, M.4    Whyte, P.5    Fanning, S.6
  • 27
    • 12444304190 scopus 로고    scopus 로고
    • New method for typing Staphylococcus aureus strains: multiple-locus variable-number tandem repeat analysis of polymorphism and genetic relationships of clinical isolates
    • Sabat A., Krzyszton-Russjan J., Strzalka W., Filipek R., Kosowska K., Hryniewicz W., Travis J., Potempa J. New method for typing Staphylococcus aureus strains: multiple-locus variable-number tandem repeat analysis of polymorphism and genetic relationships of clinical isolates. J. Clin. Microbiol. 2003, 41:1801-1804.
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 1801-1804
    • Sabat, A.1    Krzyszton-Russjan, J.2    Strzalka, W.3    Filipek, R.4    Kosowska, K.5    Hryniewicz, W.6    Travis, J.7    Potempa, J.8
  • 28
    • 84868519803 scopus 로고    scopus 로고
    • Genotyping of present-day and historical Geobacillus species isolates from milk powders by high-resolution melt analysis of multiple variable-number tandem-repeat loci
    • Seale R.B., Dhakal R., Chauhan K., Craven H.M., Deeth H.C., Pillidge C.J., Powell I.B., Turner M.S. Genotyping of present-day and historical Geobacillus species isolates from milk powders by high-resolution melt analysis of multiple variable-number tandem-repeat loci. Appl. Environ. Microbiol. 2012, 78:7090-7097.
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 7090-7097
    • Seale, R.B.1    Dhakal, R.2    Chauhan, K.3    Craven, H.M.4    Deeth, H.C.5    Pillidge, C.J.6    Powell, I.B.7    Turner, M.S.8
  • 29
    • 84906829480 scopus 로고    scopus 로고
    • The world market for cheese 1995-2004
    • International Dairy Federation, Brussels
    • Sorensen H.H. The world market for cheese 1995-2004. Bulletin of the International Dairy Federation, No. 402 2005, 33-73. International Dairy Federation, Brussels. 6th ed.
    • (2005) Bulletin of the International Dairy Federation, No. 402 , pp. 33-73
    • Sorensen, H.H.1
  • 30
    • 0032755242 scopus 로고    scopus 로고
    • Use of the RAPID ID 32 A system for rapid identification of Clostridium species important in food hygiene
    • Sperner B., Eisgruber H., Stolle A. Use of the RAPID ID 32 A system for rapid identification of Clostridium species important in food hygiene. Int. J. Food Microbiol. 1999, 52:169-180.
    • (1999) Int. J. Food Microbiol. , vol.52 , pp. 169-180
    • Sperner, B.1    Eisgruber, H.2    Stolle, A.3
  • 31
    • 33745390375 scopus 로고
    • Prevention of butyric acid fermentation by the use of nitrate
    • International Dairy Federation, Brussels, International Dairy Federation (Ed.) Methods of detection and prevention of anaerobic spore formers in relation to the quality of cheese
    • Stadhouders J. Prevention of butyric acid fermentation by the use of nitrate. Bulletin of the International Dairy Federation No. 251 1990, 40-46. International Dairy Federation, Brussels. International Dairy Federation (Ed.).
    • (1990) Bulletin of the International Dairy Federation No. 251 , pp. 40-46
    • Stadhouders, J.1
  • 32
    • 33745390375 scopus 로고
    • Prevention of the contamination of raw milk by making a good silage
    • International Dairy Federation, Brussels, International Dairy Federation (Ed.) Methods of detection and prevention of anaerobic spore formers in relation to the quality of cheese
    • Stadhouders J., Spoelstra S.F. Prevention of the contamination of raw milk by making a good silage. Bulletin of the International Dairy Federation No. 251 1990, 24-31. International Dairy Federation, Brussels. International Dairy Federation (Ed.).
    • (1990) Bulletin of the International Dairy Federation No. 251 , pp. 24-31
    • Stadhouders, J.1    Spoelstra, S.F.2
  • 33
    • 7944235954 scopus 로고    scopus 로고
    • Direct detection and identification of lactic acid bacteria in a food processing plant and in meat products using denaturing gradient gel electrophoresis
    • Takahashi H., Kimura B., Yoshikawa M., Gotou S., Watanabe I., Fujii T. Direct detection and identification of lactic acid bacteria in a food processing plant and in meat products using denaturing gradient gel electrophoresis. J. Food Prot. 2004, 67:2515-2520.
    • (2004) J. Food Prot. , vol.67 , pp. 2515-2520
    • Takahashi, H.1    Kimura, B.2    Yoshikawa, M.3    Gotou, S.4    Watanabe, I.5    Fujii, T.6
  • 34
    • 0242343642 scopus 로고
    • Prevention of butyric acid fermentation by bacterial centrifugation of the cheese milk
    • International Dairy Federation, Brussels, International Dairy Federation (Ed.) Methods of detection and prevention of anaerobic spore formers in relation to the quality of cheese
    • Waes G., Van Heddeghem A. Prevention of butyric acid fermentation by bacterial centrifugation of the cheese milk. Bulletin of the International Dairy Federation No. 251 1990, 47-50. International Dairy Federation, Brussels. International Dairy Federation (Ed.).
    • (1990) Bulletin of the International Dairy Federation No. 251 , pp. 47-50
    • Waes, G.1    Van Heddeghem, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.