-
1
-
-
84867622361
-
G-quadruplexes in RNA biology
-
Millevoi, S., Moine, H., and Vagner, S. (2012) G-quadruplexes in RNA biology Wiley Interdiscip. Rev. RNA 3, 495-507
-
(2012)
Wiley Interdiscip. Rev. RNA
, vol.3
, pp. 495-507
-
-
Millevoi, S.1
Moine, H.2
Vagner, S.3
-
2
-
-
0040142238
-
Biochemical and kinetic characterization of the RNA helicase activity of eukaryotic initiation factor 4A
-
Rogers, G. W., Jr., Richter, N. J., and Merrick, W. C. (1999) Biochemical and kinetic characterization of the RNA helicase activity of eukaryotic initiation factor 4A J. Biol. Chem. 274, 12236-12244
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 12236-12244
-
-
Rogers Jr., G.W.1
Richter, N.J.2
Merrick, W.C.3
-
3
-
-
33947310727
-
An RNA G-quadruplex in the 5' UTR of the NRAS proto-oncogene modulates translation
-
Kumari, S., Bugaut, A., Huppert, J. L., and Balasubramanian, S. (2007) An RNA G-quadruplex in the 5' UTR of the NRAS proto-oncogene modulates translation Nat. Chem. Biol. 3, 218-221
-
(2007)
Nat. Chem. Biol.
, vol.3
, pp. 218-221
-
-
Kumari, S.1
Bugaut, A.2
Huppert, J.L.3
Balasubramanian, S.4
-
4
-
-
67049134254
-
An Unusually Stable G-Quadruplex within the 5 '-UTR of the MT3 Matrix Metalloproteinase mRNA Represses Translation in Eukaryotic Cells
-
Morris, M. J. and Basu, S. (2009) An Unusually Stable G-Quadruplex within the 5 '-UTR of the MT3 Matrix Metalloproteinase mRNA Represses Translation in Eukaryotic Cells Biochemistry 48, 5313-5319
-
(2009)
Biochemistry
, vol.48
, pp. 5313-5319
-
-
Morris, M.J.1
Basu, S.2
-
5
-
-
73149103952
-
Repression of translation of human estrogen receptor alpha by G-quadruplex formation
-
Balkwill, G. D., Derecka, K., Garner, T. P., Hodgman, C., Flint, A. P., and Searle, M. S. (2009) Repression of translation of human estrogen receptor alpha by G-quadruplex formation Biochemistry 48, 11487-11495
-
(2009)
Biochemistry
, vol.48
, pp. 11487-11495
-
-
Balkwill, G.D.1
Derecka, K.2
Garner, T.P.3
Hodgman, C.4
Flint, A.P.5
Searle, M.S.6
-
6
-
-
77957061503
-
The BCL-2 5' untranslated region contains an RNA G-quadruplex-forming motif that modulates protein expression
-
Shahid, R., Bugaut, A., and Balasubramanian, S. (2010) The BCL-2 5' untranslated region contains an RNA G-quadruplex-forming motif that modulates protein expression Biochemistry 49, 8300-8306
-
(2010)
Biochemistry
, vol.49
, pp. 8300-8306
-
-
Shahid, R.1
Bugaut, A.2
Balasubramanian, S.3
-
7
-
-
77957082956
-
A G-quadruplex structure within the 5'-UTR of TRF2 mRNA represses translation in human cells
-
Gomez, D., Guedin, A., Mergny, J. L., Salles, B., Riou, J. F., Teulade-Fichou, M. P., and Calsou, P. (2010) A G-quadruplex structure within the 5'-UTR of TRF2 mRNA represses translation in human cells Nucleic Acids Res. 38, 7187-7198
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 7187-7198
-
-
Gomez, D.1
Guedin, A.2
Mergny, J.L.3
Salles, B.4
Riou, J.F.5
Teulade-Fichou, M.P.6
Calsou, P.7
-
8
-
-
84862229118
-
5'-UTR RNA G-quadruplexes: Translation regulation and targeting
-
Bugaut, A. and Balasubramanian, S. (2012) 5'-UTR RNA G-quadruplexes: translation regulation and targeting Nucleic Acids Res. 40, 4727-4741
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 4727-4741
-
-
Bugaut, A.1
Balasubramanian, S.2
-
9
-
-
57049135230
-
Position and stability are determining factors for translation repression by an RNA G-quadruplex-forming sequence within the 5' UTR of the NRAS proto-oncogene
-
Kumari, S., Bugaut, A., and Balasubramanian, S. (2008) Position and stability are determining factors for translation repression by an RNA G-quadruplex-forming sequence within the 5' UTR of the NRAS proto-oncogene Biochemistry 47, 12664-12669
-
(2008)
Biochemistry
, vol.47
, pp. 12664-12669
-
-
Kumari, S.1
Bugaut, A.2
Balasubramanian, S.3
-
10
-
-
34447541999
-
RNA quadruplex-based modulation of gene expression
-
Wieland, M. and Hartig, J. S. (2007) RNA quadruplex-based modulation of gene expression Chem. Biol. 14, 757-763
-
(2007)
Chem. Biol.
, vol.14
, pp. 757-763
-
-
Wieland, M.1
Hartig, J.S.2
-
11
-
-
84874595270
-
The G-quadruplex augments translation in the 5' untranslated region of transforming growth factor beta2
-
Agarwala, P., Pandey, S., Mapa, K., and Maiti, S. (2013) The G-quadruplex augments translation in the 5' untranslated region of transforming growth factor beta2 Biochemistry 52, 1528-1538
-
(2013)
Biochemistry
, vol.52
, pp. 1528-1538
-
-
Agarwala, P.1
Pandey, S.2
Mapa, K.3
Maiti, S.4
-
12
-
-
78650271083
-
An RNA G-Quadruplex Is Essential for Cap-Independent Translation Initiation in Human VEGF IRES
-
Morris, M. J., Negishi, Y., Pazsint, C., Schonhoft, J. D., and Basu, S. (2010) An RNA G-Quadruplex Is Essential for Cap-Independent Translation Initiation in Human VEGF IRES J. Am. Chem. Soc. 132, 17831-17839
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 17831-17839
-
-
Morris, M.J.1
Negishi, Y.2
Pazsint, C.3
Schonhoft, J.D.4
Basu, S.5
-
13
-
-
0141925805
-
A single internal ribosome entry site containing a G quartet RNA structure drives fibroblast growth factor 2 gene expression at four alternative translation initiation codons
-
Bonnal, S., Schaeffer, C., Creancier, L., Clamens, S., Moine, H., Prats, A. C., and Vagner, S. (2003) A single internal ribosome entry site containing a G quartet RNA structure drives fibroblast growth factor 2 gene expression at four alternative translation initiation codons J. Biol. Chem. 278, 39330-39336
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 39330-39336
-
-
Bonnal, S.1
Schaeffer, C.2
Creancier, L.3
Clamens, S.4
Moine, H.5
Prats, A.C.6
Vagner, S.7
-
14
-
-
84880208141
-
Stability of RNA quadruplex in open reading frame determines proteolysis of human estrogen receptor alpha
-
Endoh, T., Kawasaki, Y., and Sugimoto, N. (2013) Stability of RNA quadruplex in open reading frame determines proteolysis of human estrogen receptor alpha Nucleic Acids Res. 41, 6222-6231
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 6222-6231
-
-
Endoh, T.1
Kawasaki, Y.2
Sugimoto, N.3
-
15
-
-
56049121180
-
G-quadruplexes: The beginning and end of UTRs
-
Huppert, J. L., Bugaut, A., Kumari, S., and Balasubramanian, S. (2008) G-quadruplexes: the beginning and end of UTRs Nucleic Acids Res. 36, 6260-6268
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 6260-6268
-
-
Huppert, J.L.1
Bugaut, A.2
Kumari, S.3
Balasubramanian, S.4
-
16
-
-
77952065213
-
Macrocyclic hexaoxazoles: Influence of aminoalkyl substituents on RNA and DNA G-quadruplex stabilization and cytotoxicity
-
Satyanarayana, M., Kim, Y. A., Rzuczek, S. G., Pilch, D. S., Liu, A. A., Liu, L. F., Rice, J. E., and LaVoie, E. J. (2010) Macrocyclic hexaoxazoles: Influence of aminoalkyl substituents on RNA and DNA G-quadruplex stabilization and cytotoxicity J. Bioorg. Med. Chem. Lett. 20, 3150-3154
-
(2010)
J. Bioorg. Med. Chem. Lett.
, vol.20
, pp. 3150-3154
-
-
Satyanarayana, M.1
Kim, Y.A.2
Rzuczek, S.G.3
Pilch, D.S.4
Liu, A.A.5
Liu, L.F.6
Rice, J.E.7
Lavoie, E.J.8
-
17
-
-
84861382319
-
The porphyrin TmPyP4 unfolds the extremely stable G-quadruplex in MT3-MMP mRNA and alleviates its repressive effect to enhance translation in eukaryotic cells
-
Morris, M. J., Wingate, K. L., Silwal, J., Leeper, T. C., and Basu, S. (2012) The porphyrin TmPyP4 unfolds the extremely stable G-quadruplex in MT3-MMP mRNA and alleviates its repressive effect to enhance translation in eukaryotic cells Nucleic Acids Res. 40, 4137-4145
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 4137-4145
-
-
Morris, M.J.1
Wingate, K.L.2
Silwal, J.3
Leeper, T.C.4
Basu, S.5
-
18
-
-
67649833785
-
G-quadruplex nucleic acids as therapeutic targets
-
Balasubramanian, S. and Neidle, S. (2009) G-quadruplex nucleic acids as therapeutic targets Curr. Opin. Chem. Biol. 13, 345-353
-
(2009)
Curr. Opin. Chem. Biol.
, vol.13
, pp. 345-353
-
-
Balasubramanian, S.1
Neidle, S.2
-
20
-
-
81855190848
-
Inhibition of translation by small RNA-stabilized mRNA structures in human cells
-
Ito, K., Go, S., Komiyama, M., and Xu, Y. (2011) Inhibition of translation by small RNA-stabilized mRNA structures in human cells J. Am. Chem. Soc. 133, 19153-19159
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 19153-19159
-
-
Ito, K.1
Go, S.2
Komiyama, M.3
Xu, Y.4
-
21
-
-
77955570818
-
Antisense-induced guanine quadruplexes inhibit reverse transcription by HIV-1 reverse transcriptase
-
Hagihara, M., Yamauchi, L., Seo, A., Yoneda, K., Senda, M., and Nakatani, K. (2010) Antisense-induced guanine quadruplexes inhibit reverse transcription by HIV-1 reverse transcriptase J. Am. Chem. Soc. 132, 11171-11178
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 11171-11178
-
-
Hagihara, M.1
Yamauchi, L.2
Seo, A.3
Yoneda, K.4
Senda, M.5
Nakatani, K.6
-
22
-
-
77958027783
-
Targeting Eukaryotic Translation Initiation Factor 4E (eIF4E) in Cancer
-
Hsieh, A. C. and Ruggero, D. (2010) Targeting Eukaryotic Translation Initiation Factor 4E (eIF4E) in Cancer Clin. Cancer Res. 16, 4914-4920
-
(2010)
Clin. Cancer Res.
, vol.16
, pp. 4914-4920
-
-
Hsieh, A.C.1
Ruggero, D.2
-
23
-
-
84877843724
-
The oncogene eIF4E: Using biochemical insights to target cancer
-
Carroll, M. and Borden, K. L. (2013) The oncogene eIF4E: using biochemical insights to target cancer J. Interferon Cytokine Res. 33, 227-238
-
(2013)
J. Interferon Cytokine Res.
, vol.33
, pp. 227-238
-
-
Carroll, M.1
Borden, K.L.2
-
24
-
-
2342584183
-
EIF4E - From translation to transformation
-
Mamane, Y., Petroulakis, E., Rong, L., Yoshida, K., Ler, L. W., and Sonenberg, N. (2004) eIF4E - from translation to transformation Oncogene 23, 3172-3179
-
(2004)
Oncogene
, vol.23
, pp. 3172-3179
-
-
Mamane, Y.1
Petroulakis, E.2
Rong, L.3
Yoshida, K.4
Ler, L.W.5
Sonenberg, N.6
-
25
-
-
0018516382
-
Eukaryotic mRNA cap binding protein: Purification by affinity chromatography on sepharose-coupled m7GDP
-
Sonenberg, N., Rupprecht, K. M., Hecht, S. M., and Shatkin, A. J. (1979) Eukaryotic mRNA cap binding protein: purification by affinity chromatography on sepharose-coupled m7GDP Proc. Natl. Acad. Sci. U. S. A. 76, 4345-4349
-
(1979)
Proc. Natl. Acad. Sci. U. S. A.
, vol.76
, pp. 4345-4349
-
-
Sonenberg, N.1
Rupprecht, K.M.2
Hecht, S.M.3
Shatkin, A.J.4
-
26
-
-
84894136566
-
Targeting eukaryotic translation in mesothelioma cells with an eIF4E-specific antisense oligonucleotide
-
Jacobson, B. A., Thumma, S. C., Jay-Dixon, J., Patel, M. R., Dubear Kroening, K., Kratzke, M. G., Etchison, R. G., Konicek, B. W., Graff, J. R., and Kratzke, R. A. (2013) Targeting eukaryotic translation in mesothelioma cells with an eIF4E-specific antisense oligonucleotide PLoS One 8, e81669
-
(2013)
PLoS One
, vol.8
, pp. 81669
-
-
Jacobson, B.A.1
Thumma, S.C.2
Jay-Dixon, J.3
Patel, M.R.4
Dubear Kroening, K.5
Kratzke, M.G.6
Etchison, R.G.7
Konicek, B.W.8
Graff, J.R.9
Kratzke, R.A.10
-
27
-
-
1542303744
-
Analysis of thermal melting curves
-
Mergny, J. L. and Lacroix, L. (2003) Analysis of thermal melting curves Oligonucleotides 13, 515-537
-
(2003)
Oligonucleotides
, vol.13
, pp. 515-537
-
-
Mergny, J.L.1
Lacroix, L.2
-
28
-
-
84869006723
-
A hybrid G-quadruplex structure formed between RNA and DNA explains the extraordinary stability of the mitochondrial R-loop
-
Wanrooij, P. H., Uhler, J. P., Shi, Y., Westerlund, F., Falkenberg, M., and Gustafsson, C. M. (2012) A hybrid G-quadruplex structure formed between RNA and DNA explains the extraordinary stability of the mitochondrial R-loop Nucleic Acids Res. 40, 10334-10344
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 10334-10344
-
-
Wanrooij, P.H.1
Uhler, J.P.2
Shi, Y.3
Westerlund, F.4
Falkenberg, M.5
Gustafsson, C.M.6
-
30
-
-
33947359032
-
Effect of G-Tract Length on the Topology and Stability of Intramolecular DNA Quadruplexes
-
Rachwal, P. A., Brown, T., and Fox, K. R. (2007) Effect of G-Tract Length on the Topology and Stability of Intramolecular DNA Quadruplexes Biochemistry 46, 3036-3044
-
(2007)
Biochemistry
, vol.46
, pp. 3036-3044
-
-
Rachwal, P.A.1
Brown, T.2
Fox, K.R.3
-
31
-
-
0000015743
-
Antisense oligonucleotides: Basic concepts and mechanisms
-
Dias, N. and Stein, C. A. (2002) Antisense oligonucleotides: basic concepts and mechanisms Mol. Cancer. Ther. 1, 347-355
-
(2002)
Mol. Cancer. Ther.
, vol.1
, pp. 347-355
-
-
Dias, N.1
Stein, C.A.2
-
32
-
-
14844353406
-
The effect of chemical modifications on the thermal stability of different G-quadruplex-forming oligonucleotides
-
Sacca, B., Lacroix, L., and Mergny, J. L. (2005) The effect of chemical modifications on the thermal stability of different G-quadruplex-forming oligonucleotides Nucleic Acids Res. 33, 1182-1192
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 1182-1192
-
-
Sacca, B.1
Lacroix, L.2
Mergny, J.L.3
-
33
-
-
0035912725
-
Molecular mechanisms of translation initiation in eukaryotes
-
Pestova, T. V., Kolupaeva, V. G., Lomakin, I. B., Pilipenko, E. V., Shatsky, I. N., Agol, V. I., and Hellen, C. U. (2001) Molecular mechanisms of translation initiation in eukaryotes Proc. Natl. Acad. Sci. U. S. A. 98, 7029-7036
-
(2001)
Proc. Natl. Acad. Sci. U. S. A.
, vol.98
, pp. 7029-7036
-
-
Pestova, T.V.1
Kolupaeva, V.G.2
Lomakin, I.B.3
Pilipenko, E.V.4
Shatsky, I.N.5
Agol, V.I.6
Hellen, C.U.7
-
34
-
-
77955617241
-
The role of IRES in translation initiation
-
Perard, J., Drouet, E., and Baudin, F. (2010) The role of IRES in translation initiation Virologie 14, 241-253
-
(2010)
Virologie
, vol.14
, pp. 241-253
-
-
Perard, J.1
Drouet, E.2
Baudin, F.3
-
35
-
-
84861342693
-
A new framework for understanding IRES-mediated translation
-
Komar, A. A., Mazumder, B., and Merrick, W. C. (2012) A new framework for understanding IRES-mediated translation Gene 502, 75-86
-
(2012)
Gene
, vol.502
, pp. 75-86
-
-
Komar, A.A.1
Mazumder, B.2
Merrick, W.C.3
-
36
-
-
84862025869
-
The structures of nonprotein-coding RNAs that drive internal ribosome entry site function
-
Plank, T. D. and Kieft, J. S. (2012) The structures of nonprotein-coding RNAs that drive internal ribosome entry site function Wiley Interdiscip. Rev. RNA 3, 195-212
-
(2012)
Wiley Interdiscip. Rev. RNA
, vol.3
, pp. 195-212
-
-
Plank, T.D.1
Kieft, J.S.2
-
37
-
-
75149196287
-
The mechanism of eukaryotic translation initiation and principles of its regulation
-
Jackson, R. J., Hellen, C. U., and Pestova, T. V. (2010) The mechanism of eukaryotic translation initiation and principles of its regulation Nat. Rev. Mol. Cell. Biol. 11, 113-127
-
(2010)
Nat. Rev. Mol. Cell. Biol.
, vol.11
, pp. 113-127
-
-
Jackson, R.J.1
Hellen, C.U.2
Pestova, T.V.3
-
38
-
-
33745211255
-
Antisense oligonucleotides: From design to therapeutic application
-
Chan, J. H., Lim, S., and Wong, W. S. (2006) Antisense oligonucleotides: from design to therapeutic application Clin. Exp. Pharmacol. Physiol. 33, 533-540
-
(2006)
Clin. Exp. Pharmacol. Physiol.
, vol.33
, pp. 533-540
-
-
Chan, J.H.1
Lim, S.2
Wong, W.S.3
-
39
-
-
0030057861
-
Effects of oligonucleotide length, mismatches and mRNA levels on C-5 propyne-modified antisense potency
-
Flanagan, W. M., Kothavale, A., and Wagner, R. W. (1996) Effects of oligonucleotide length, mismatches and mRNA levels on C-5 propyne-modified antisense potency Nucleic Acids Res. 24, 2936-2941
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 2936-2941
-
-
Flanagan, W.M.1
Kothavale, A.2
Wagner, R.W.3
-
40
-
-
0028801330
-
Rapid degradation of AU-rich element (ARE) mRNAs is activated by ribosome transit and blocked by secondary structure at any position 5' to the ARE
-
Curatola, A. M., Nadal, M. S., and Schneider, R. J. (1995) Rapid degradation of AU-rich element (ARE) mRNAs is activated by ribosome transit and blocked by secondary structure at any position 5' to the ARE Mol. Cell. Biol. 15, 6331-6340
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 6331-6340
-
-
Curatola, A.M.1
Nadal, M.S.2
Schneider, R.J.3
-
41
-
-
84879043770
-
Effect of loops and G-quartets on the stability of RNA G-quadruplexes
-
Pandey, S., Agarwala, P., and Maiti, S. (2013) Effect of loops and G-quartets on the stability of RNA G-quadruplexes J. Phys. Chem. B 117, 6896-6905
-
(2013)
J. Phys. Chem. B
, vol.117
, pp. 6896-6905
-
-
Pandey, S.1
Agarwala, P.2
Maiti, S.3
-
42
-
-
84878526299
-
Co-transcriptional formation of DNA:RNA hybrid G-quadruplex and potential function as constitutional cis element for transcription control
-
Zheng, K. W., Xiao, S., Liu, J. Q., Zhang, J. Y., Hao, Y. H., and Tan, Z. (2013) Co-transcriptional formation of DNA:RNA hybrid G-quadruplex and potential function as constitutional cis element for transcription control Nucleic Acids Res. 41, 5533-5541
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 5533-5541
-
-
Zheng, K.W.1
Xiao, S.2
Liu, J.Q.3
Zhang, J.Y.4
Hao, Y.H.5
Tan, Z.6
-
43
-
-
84893465164
-
Mechanism and Manipulation of DNA:RNA Hybrid G-Quadruplex Formation in Transcription of G-Rich DNA
-
Zhang, J.-y., Zheng, K.-w., Xiao, S., Hao, Y.-h., and Tan, Z. (2014) Mechanism and Manipulation of DNA:RNA Hybrid G-Quadruplex Formation in Transcription of G-Rich DNA J. Am. Chem. Soc. 136, 1381-1390
-
(2014)
J. Am. Chem. Soc.
, vol.136
, pp. 1381-1390
-
-
Xiao, S.1
Tan, Z.2
-
44
-
-
61749103876
-
Stability of Eukaryotic Translation Initiation Factor 4E mRNA Is Regulated by HuR, and This Activity Is Dysregulated in Cancer
-
Topisirovic, I., Siddiqui, N., Orolicki, S., Skrabanek, L. A., Tremblay, M., Hoang, T., and Borden, K. L. B. (2009) Stability of Eukaryotic Translation Initiation Factor 4E mRNA Is Regulated by HuR, and This Activity Is Dysregulated in Cancer Mol. Cell. Biol. 29, 1152-1162
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 1152-1162
-
-
Topisirovic, I.1
Siddiqui, N.2
Orolicki, S.3
Skrabanek, L.A.4
Tremblay, M.5
Hoang, T.6
Borden, K.L.B.7
-
45
-
-
31144448042
-
AU-rich elements and associated factors: Are there unifying principles?
-
Barreau, C., Paillard, L., and Osborne, H. B. (2005) AU-rich elements and associated factors: are there unifying principles? Nucleic Acids Res. 33, 7138-7150
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 7138
-
-
Barreau, C.1
Paillard, L.2
Osborne, H.B.3
|