메뉴 건너뛰기




Volumn 2014, Issue , 2014, Pages

The Zebrafish GenomeWiki: A crowdsourcing approach to connect the long tail for zebrafish gene annotation

(47)  Singh, Meghna a,b   Bhartiya, Deeksha a,b   Maini, Jayant a   Sharma, Meenakshi a   Singh, Angom Ramcharan a   Kadarkaraisamy, Subburaj a   Rana, Rajiv a   Sabharwal, Ankit a,b   Nanda, Srishti c   Ramachandran, Aravindhakshan a   Mittal, Ashish a   Kapoor, Shruti a,b   Sehgal, Paras a   Asad, Zainab a,b   Kaushik, Kriti a,b   Vellarikkal, Shamsudheen Karuthedath a,b   Jagga, Divya d   Muthuswami, Muthulakshmi a   Chauhan, Rajendra K a   Leonard, Elvin a   more..


Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; ARTICLE; CROWDSOURCING; GENETIC DATABASE; GENETICS; GENOME; INTERNET; METHODOLOGY; MOLECULAR GENETICS; ZEBRA FISH;

EID: 84906562418     PISSN: 17580463     EISSN: None     Source Type: Journal    
DOI: 10.1093/database/bau011     Document Type: Article
Times cited : (9)

References (38)
  • 1
    • 84879786890 scopus 로고    scopus 로고
    • A brief review on the human encyclopedia of DNA elements (ENCODE) project
    • Qu, H. and Fang, X. (2013) A brief review on the Human Encyclopedia of DNA Elements (ENCODE) project. Genomics Proteomics Bioinform., 11, 135-141.
    • (2013) Genomics Proteomics Bioinform. , vol.11 , pp. 135-141
    • Qu, H.1    Fang, X.2
  • 2
    • 84865121188 scopus 로고    scopus 로고
    • An encyclopedia of mouse DNA elements (Mouse ENCODE)
    • Mouse ENCODE Consortium, Stamatoyannopoulos, J.A., Snyder, M. et al. (2012) An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome Biol., 13, 418.
    • (2012) Genome Biol. , vol.13 , pp. 418
    • Stamatoyannopoulos, J.A.1    Snyder, M.2
  • 3
    • 78650331647 scopus 로고    scopus 로고
    • Identification of functional elements and regulatory circuits by drosophila modENCODE
    • modENCODE Consortium, Roy, S., Ernst, J. et al. (2010) Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science, 330, 1787-1797.
    • (2010) Science , vol.330 , pp. 1787-1797
    • Roy, S.1    Ernst, J.2
  • 4
    • 78650410139 scopus 로고    scopus 로고
    • Integrative analysis of the caenorhabditis elegans genome by the modENCODE project
    • Gerstein, M.B., Lu, Z.J., van Nostrand, E.L. et al. (2010) Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science, 330, 1775-1787.
    • (2010) Science , vol.330 , pp. 1775-1787
    • Gerstein, M.B.1    Lu, Z.J.2    Van Nostrand, E.L.3
  • 5
    • 33750504034 scopus 로고    scopus 로고
    • Community annotation: Procedures, protocols, and supporting tools
    • Elsik, C.G., Worley, K.C., Zhang, L. et al. (2006) Community annotation: procedures, protocols, and supporting tools. Genome Res., 16, 1329-1333.
    • (2006) Genome Res. , vol.16 , pp. 1329-1333
    • Elsik, C.G.1    Worley, K.C.2    Zhang, L.3
  • 6
    • 51349115095 scopus 로고    scopus 로고
    • Big data: The future of biocuration
    • Howe, D., Costanzo, M., Fey, P. et al. (2008) Big data: the future of biocuration. Nature, 455, 47-50.
    • (2008) Nature , vol.455 , pp. 47-50
    • Howe, D.1    Costanzo, M.2    Fey, P.3
  • 7
    • 49949099664 scopus 로고    scopus 로고
    • Towards a cyberinfrastructure for the biological sciences: Progress, visions and challenges
    • Stein, L.D. (2008) Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges. Nat. Rev. Genet., 9, 678-688.
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 678-688
    • Stein, L.D.1
  • 8
    • 31844453162 scopus 로고    scopus 로고
    • Gene-function wiki would let biologists pool worldwide resources
    • Wang, K. (2006) Gene-function wiki would let biologists pool worldwide resources. Nature, 439, 534.
    • (2006) Nature , vol.439 , pp. 534
    • Wang, K.1
  • 9
    • 33847132279 scopus 로고    scopus 로고
    • Key biology databases go wiki
    • Giles, J. (2007) Key biology databases go wiki. Nature, 445, 691.
    • (2007) Nature , vol.445 , pp. 691
    • Giles, J.1
  • 10
    • 34147162107 scopus 로고    scopus 로고
    • Genome re-annotation: A wiki solution?
    • Salzberg, S.L. (2007) Genome re-annotation: a wiki solution? Genome Biol., 8, 102.
    • (2007) Genome Biol. , vol.8 , pp. 102
    • Salzberg, S.L.1
  • 12
    • 22044443709 scopus 로고    scopus 로고
    • The sequence ontology: A tool for the unification of genome annotations
    • Eilbeck, K., Lewis, S.E., Mungall, C.J. et al. (2005) The sequence ontology: a tool for the unification of genome annotations. Genome Biol., 6, R44.
    • (2005) Genome Biol. , vol.6 , pp. R44
    • Eilbeck, K.1    Lewis, S.E.2    Mungall, C.J.3
  • 13
    • 58149202157 scopus 로고    scopus 로고
    • Human proteinpedia: A unified discovery resource for proteomics research
    • Kandasamy, K., Keerthikumar, S., Goel, R. et al. (2009) Human Proteinpedia: a unified discovery resource for proteomics research. Nucleic Acids Res., 37, D773-D781.
    • (2009) Nucleic Acids Res. , vol.37 , pp. D773-D781
    • Kandasamy, K.1    Keerthikumar, S.2    Goel, R.3
  • 15
    • 0029437874 scopus 로고
    • The worm community system, release 2.0 (WCSr2)
    • Shoman, L.M., Grossman, E., Powell, K. et al. (1995) The Worm Community System, release 2.0 (WCSr2). Methods Cell Biol., 48, 607-625.
    • (1995) Methods Cell Biol. , vol.48 , pp. 607-625
    • Shoman, L.M.1    Grossman, E.2    Powell, K.3
  • 16
    • 33645824515 scopus 로고    scopus 로고
    • The long tail
    • Anderson, C. (2004) The long tail. Wired, 12(10).
    • (2004) Wired , vol.12 , Issue.10
    • Anderson, C.1
  • 17
    • 47149084410 scopus 로고    scopus 로고
    • Calling on a million minds for community annotation in WikiProteins
    • Mons, B., Ashburner, M., Chichester, C. et al. (2008) Calling on a million minds for community annotation in WikiProteins. Genome Biol., 9, R89.
    • (2008) Genome Biol. , vol.9 , pp. R89
    • Mons, B.1    Ashburner, M.2    Chichester, C.3
  • 18
    • 48349105261 scopus 로고    scopus 로고
    • WikiPathways: Pathway editing for the people
    • Pico, A.R., Kelder, T., van Iersel, M.P. et al. (2008) WikiPathways: pathway editing for the people. PLoS Biol., 6, e184.
    • (2008) PLoS Biol. , vol.6 , pp. e184
    • Pico, A.R.1    Kelder, T.2    Van Iersel, M.P.3
  • 19
    • 48349115184 scopus 로고    scopus 로고
    • A gene wiki for community annotation of gene function
    • Huss, J.W. III, Orozco, C., Goodale, J. et al. (2008) A gene wiki for community annotation of gene function. PLoS Biol., 6, e175.
    • (2008) PLoS Biol. , vol.6 , pp. e175
    • Huss, J.W.1    Orozco, C.2    Goodale, J.3
  • 20
    • 65549095054 scopus 로고    scopus 로고
    • BOWiki: An ontology-based wiki for annotation of data and integration of knowledge in biology
    • Hoehndorf, R., Bacher, J., Backhaus, M. et al. (2009) BOWiki: an ontology-based wiki for annotation of data and integration of knowledge in biology. BMC Bioinformatics, 10, S5.
    • (2009) BMC Bioinformatics , vol.10 , pp. S5
    • Hoehndorf, R.1    Bacher, J.2    Backhaus, M.3
  • 21
    • 41149160103 scopus 로고    scopus 로고
    • Biological data integration using semantic web technologies
    • Pasquier, C. (2008) Biological data integration using semantic web technologies. Biochimie, 90, 584-594.
    • (2008) Biochimie , vol.90 , pp. 584-594
    • Pasquier, C.1
  • 22
    • 36448963071 scopus 로고    scopus 로고
    • A semantic web approach applied to integrative bioinformatics experimentation: A biological use case with genomics data
    • Post, L.J., Roos, M., Marshall, M.S. et al. (2007) A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data. Bioinformatics, 23, 3080-3087.
    • (2007) Bioinformatics , vol.23 , pp. 3080-3087
    • Post, L.J.1    Roos, M.2    Marshall, M.S.3
  • 24
    • 78651320424 scopus 로고    scopus 로고
    • The UCSC genome browser database: Update 2011
    • Fujita, P.A., Rhead, B., Zweig, A.S. et al. (2011) The UCSC Genome Browser database: update 2011. Nucleic Acids Res., 39, D876-D882.
    • (2011) Nucleic Acids Res. , vol.39 , pp. D876-D882
    • Fujita, P.A.1    Rhead, B.2    Zweig, A.S.3
  • 25
    • 78651364359 scopus 로고    scopus 로고
    • ZFIN: Enhancements and updates to the zebrafish model organism database
    • Bradford, Y., Conlin, T., Dunn, N. et al. (2011) ZFIN: enhancements and updates to the Zebrafish model organism database. Nucleic Acids Res., 39, D822-D829.
    • (2011) Nucleic Acids Res. , vol.39 , pp. D822-D829
    • Bradford, Y.1    Conlin, T.2    Dunn, N.3
  • 26
    • 84876273475 scopus 로고    scopus 로고
    • A sequence-based variation map of zebrafish
    • Patowary, A., Purkanti, R., Singh, M. et al. (2013) A sequence-based variation Map of Zebrafish. Zebrafish, 10, 15-20.
    • (2013) Zebrafish , vol.10 , pp. 15-20
    • Patowary, A.1    Purkanti, R.2    Singh, M.3
  • 27
    • 0033569405 scopus 로고    scopus 로고
    • A large-scale insertional mutagenesis screen in zebrafish
    • Amsterdam, A., Burgess, S., Golling, G. et al. (1999) A large-scale insertional mutagenesis screen in zebrafish. Genes Dev., 13, 2713-2724.
    • (1999) Genes Dev. , vol.13 , pp. 2713-2724
    • Amsterdam, A.1    Burgess, S.2    Golling, G.3
  • 28
    • 44949155482 scopus 로고    scopus 로고
    • Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases
    • Doyon, Y., McCammon, J.M., Miller, J.C. et al. (2008) Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases. Nat. Biotechnol., 26, 702-708.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 702-708
    • Doyon, Y.1    McCammon, J.M.2    Miller, J.C.3
  • 29
    • 77957920237 scopus 로고    scopus 로고
    • ZTrap: Zebrafish gene trap and enhancer trap database
    • Kawakami, K., Abe, G., Asada, T. et al. (2010) zTrap: zebrafish gene trap and enhancer trap database. BMC Dev. Biol., 10, 105.
    • (2010) BMC Dev. Biol. , vol.10 , pp. 105
    • Kawakami, K.1    Abe, G.2    Asada, T.3
  • 30
    • 33644650207 scopus 로고    scopus 로고
    • Zebrafish transgenic enhancer TRAP line database (ZETRAP)
    • Choo, B.G., Kondrichin, I., Parinov, S. et al. (2006) Zebrafish transgenic Enhancer TRAP line database (ZETRAP). BMC Dev. Biol., 6, 5.
    • (2006) BMC Dev. Biol. , vol.6 , pp. 5
    • Choo, B.G.1    Kondrichin, I.2    Parinov, S.3
  • 31
    • 79957812969 scopus 로고    scopus 로고
    • In vivo protein trapping produces a functional expression codex of the vertebrate proteome
    • Clark, K.J., Balciunas, D., Pogoda, H.M. et al. (2011) In vivo protein trapping produces a functional expression codex of the vertebrate proteome. Nat. Methods, 8, 506-515.
    • (2011) Nat. Methods , vol.8 , pp. 506-515
    • Clark, K.J.1    Balciunas, D.2    Pogoda, H.M.3
  • 32
    • 77953623103 scopus 로고    scopus 로고
    • FishMap zv8 update - A genomic regulatory map of zebrafish
    • Bhartiya, D., Maini, J., Sharma, M. et al. (2010) FishMap Zv8 update - a genomic regulatory map of zebrafish. Zebrafish, 7, 179-180.
    • (2010) Zebrafish , vol.7 , pp. 179-180
    • Bhartiya, D.1    Maini, J.2    Sharma, M.3
  • 33
    • 45549090297 scopus 로고    scopus 로고
    • FishMap: A community resource for zebrafish genomics
    • Meli, R., Prasad, A., Patowary, A. et al. (2008) FishMap: a community resource for zebrafish genomics. Zebrafish, 5, 125-130.
    • (2008) Zebrafish , vol.5 , pp. 125-130
    • Meli, R.1    Prasad, A.2    Patowary, A.3
  • 34
    • 50449088836 scopus 로고    scopus 로고
    • A wiki for the life sciences where authorship matters
    • Hoffmann, R. (2008) A wiki for the life sciences where authorship matters. Nat. Genet., 40, 1047-1051.
    • (2008) Nat. Genet. , vol.40 , pp. 1047-1051
    • Hoffmann, R.1
  • 36
    • 0031762950 scopus 로고    scopus 로고
    • GeneCards: A novel functional genomics compendium with automated data mining and query reformulation support
    • Rebhan, M., Chalifa-Caspi, V., Prilusky, J. et al. (1998) GeneCards: a novel functional genomics compendium with automated data mining and query reformulation support. Bioinformatics, 14, 656-664.
    • (1998) Bioinformatics , vol.14 , pp. 656-664
    • Rebhan, M.1    Chalifa-Caspi, V.2    Prilusky, J.3
  • 38
    • 79957605208 scopus 로고    scopus 로고
    • The role of a bioresource research impact factor as an incentive to share human bioresources
    • Cambon-Thomsen, A., Thorisson, G.A., Mabile, L. et al. (2011) The role of a Bioresource Research Impact Factor as an incentive to share human bioresources. Nat. Genet., 43, 503-504.
    • (2011) Nat. Genet. , vol.43 , pp. 503-504
    • Cambon-Thomsen, A.1    Thorisson, G.A.2    Mabile, L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.