FishMap Zv8 update - A genomic regulatory map of zebrafish

Zebrafish

Volumn 7, Issue 2, 2010, Pages 179-180

  Bhartiya, Deeksha ^a   Maini, Jayant ^a   Sharma, Meenakshi ^a   Joshi, Prateek ^a   Laddha, Saurabh V ^a   Jalali, Saakshi ^a   Patowary, Ashok ^a   Purkanti, Ramya ^a   Lalwani, Mukesh ^a   Singh, Angom Ramcharan ^a   Chauhan, Rajendra ^a   Singh, Naresh ^a   Bhardwaj, Anshu ^a   Scaria, Vinod ^a   Sivasubbu, Sridhar ^a  

^a CSIR INSTITUTE OF GENOMICS AND INTEGRATIVE BIOLOGY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; ARTICLE; BIOLOGY; COMPUTER PROGRAM; GENE REGULATORY NETWORK; GENETIC DATABASE; GENETICS; GENOMICS; INTERNET; METHODOLOGY; ZEBRA FISH; PROCEDURES;

ANIMALS; COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; GENE REGULATORY NETWORKS; GENOMICS; INTERNET; SOFTWARE; ZEBRAFISH;

DANIO RERIO; VERTEBRATA;

EID: 77953623103     PISSN: 15458547     EISSN: None     Source Type: Journal    
DOI: 10.1089/zeb.2009.0624     Document Type: Article

References (16)

1. Meli R, et al. FishMap: a community resource for zebrafish genomics. Zebrafish 2008;5:125-130.
2. Mattick JS. Non-coding RNAs: the architects of eukaryotic complexity. EMBO Rep 2001;2:986-991.
3. Begemann G. MicroRNAs and RNA interference in zebrafish development. Zebrafish 2008;5:111-119.
4. Giraldez AJ, et al. Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs. Science 2006; 312:75-79.
5. Giraldez AJ, et al. MicroRNAs regulate brain morphogenesis in zebrafish. Science 2005;308:833-838.
6. Lambert A, et al. The ERPIN server: an interface to profilebased RNA motif identification. Nucleic Acids Res 2004;32: W160-W165.
7. Kauppinen S, Vester B, Wengel J. Locked nucleic acid: highaffinity targeting of complementary RNA for RNomics. Handb Exp Pharmacol 2006;173:405-422.
8. Moulton JD, Yan YL. Using Morpholinos to control gene expression. Curr Protoc Mol Biol 2008;Chapter 26, Unit 26.8.
9. Achenbach JC, Chiuman W, Cruz RP, Li Y. DNAzymes: from creation in vitro to application in vivo. Curr Pharm Biotechnol 2004;5:321-336.
10. Jadhav VM, Scaria V, Maiti S. Antagomirzymes: oligonucleotide enzymes that specifically silence microRNA function. Angew Chem Int Ed Engl 2009;48:2557-2560.
11. Burge S, Parkinson GN, Hazel P, Todd AK, Neidle S. Quadruplex DNA: sequence, topology and structure. Nucleic Acids Res 2006;34:5402-5415.
12. Arora A, et al. Inhibition of translation in living eukaryotic cells by an RNA G-quadruplex motif. RNA 2008;14:1290-1296.
13. Wong HM, Payet L, Huppert JL. Function and targeting of G-quadruplexes. Curr Opin Mol Ther 2009;11:146-155.
14. Scaria V, Hariharan M, Arora A, Maiti S. Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences. Nucleic Acids Res 2006;34:W683-W685.
15. Luykx P, Bajic IV, Khuri S. NXSensor web tool for evaluating DNA for nucleosome exclusion sequences and accessibility to binding factors. Nucleic Acids Res 2006;34: W560-W565.
16. Reinartz J, et al. Massively parallel signature sequencing (MPSS) as a tool for in-depth quantitative gene expression profiling in all organisms. Brief Funct Genomics Proteomics 2002;1:95-104.