High-resolution structure of a virally encoded DNA-translocating conduit and the mechanism of DNA penetration

Journal of Virology

Volumn 88, Issue 18, 2014, Pages 10276-10279

  Sun, Lei ^a   Rossmann, Michael G ^a   Fane, Bentley A ^b  

^a PURDUE UNIVERSITY   (United States)

^b UNIVERSITY OF ARIZONA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CAPSID PROTEIN; DOUBLE STRANDED DNA; PROTEIN H; SINGLE STRANDED DNA; UNCLASSIFIED DRUG; VIRUS DNA; VIRUS PROTEIN;

AMINO ACID SUBSTITUTION; AMINO TERMINAL SEQUENCE; ARTICLE; BACTERIAL CELL WALL; BACTERIOPHAGE; CARBOXY TERMINAL SEQUENCE; CRYSTAL STRUCTURE; DNA CONTENT; DNA PENETRATION; DNA REPLICATION; DNA STRUCTURE; DNA TRANSFER; ESCHERICHIA COLI; IN VITRO STUDY; IN VIVO STUDY; LIPID BILAYER; MOLECULAR INTERACTION; NONHUMAN; NUCLEIC ACID STRUCTURE, METABOLISM AND FUNCTION; PRIORITY JOURNAL; STRUCTURE ANALYSIS; VIRUS CAPSID; BACTERIOPHAGE PHI X 174; CHEMICAL STRUCTURE; CHEMISTRY; GENETICS; METABOLISM; TRANSPORT AT THE CELLULAR LEVEL; VIROLOGY;

BACTERIOPHAGE PHI X 174; BIOLOGICAL TRANSPORT; DNA, VIRAL; ESCHERICHIA COLI; MODELS, MOLECULAR; VIRAL PROTEINS;

EID: 84906330881     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.00291-14     Document Type: Article

References (20)

1. Leiman PG, Shneider MM. 2012. Contractile tail machines of bacteriophages, p 93-114. In Rossmann MG, Rao VG (ed), Viral molecular machines. Springer, New York, NY.
2. Hu B, Margolin W, Molineux IJ, Liu J. 2013. The bacteriophage T7 virion undergoes extensive structural remodeling during infection. Science 339:576-579. http://dx.doi.org/10.1126/science.1231887.
3. Esquinas-Rychen M, Erni B. 2001. Facilitation of bacteriophage lambda DNAinjection by inner membrane proteins of the bacterial phosphoenolpyruvate: carbohydrate phosphotransferase system (PTS). J. Mol. Microbiol. Biotechnol. 3:361-370.
4. Russel M, Model P. 2006. Filamentous phage, p 146-160. In Calendar RL (ed), The bacteriophages, 2nd ed. Oxford University Press, London, United Kingdom.
5. Van Duin JT, N. 2006. Single-stranded RNA phages, p 175-196. In Calendar RL (ed), The bacteriophages, 2nd ed. Oxford University Press, London, United Kingdom.
6. Sun L, Young LN, Zhang X, Boudko SP, Fokine A, Zbornik E, Roznowski AP, Moulineux I, Rossmann MG, Fane BA. 2014. Icosahedral ΦX174 forms a tail for DNA transport. Nature 505:432-435. http: //dx.doi.org/10.1038/nature12816.
7. Michel A, Clermont O, Denamur E, Tenaillon O. 2010. Bacteriophage phiX174's ecological niche and the flexibility of its Escherichia coli lipopolysaccharide receptor. Appl. Environ. Microbiol. 76:7310-7313. http: //dx.doi.org/10.1128/AEM.02721-09.
8. Jazwinski SM, Lindberg AA, Kornberg A. 1975. The gene H spike protein of bacteriophages phiX174 and S13. I. Functions in phage-receptor recognition and in transfection. Virology 66:283-293.
9. Silhavy TJ, Kahne D, Walker S. 2010. The bacterial cell envelope. Cold Spring Harb. Perspect. Biol. 2(5):a000414. http://dx.doi.org/10.1101 /cshperspect.a000414.
10. Shepard W, Cruse WB, Fourme R, de la Fortelle E, Prange T. 1998. A zipper-like duplex in DNA: the crystal structure of d(GCGAAAGCT) at 2.1 A resolution. Structure 6:849-861. http://dx.doi.org/10.1016/S0969 -2126(98)00087-2.
11. Wang YA, Yu X, Overman S, Tsuboi M, Thomas GJ, Jr, Egelman EH. 2006. The structure of a filamentous bacteriophage. J. Mol. Biol. 361:209- 215. http://dx.doi.org/10.1016/j.jmb.2006.06.027.
12. Dokland T, McKenna R, Ilag LL, Bowman BR, Incardona NL, Fane BA, Rossmann MG. 1997. Structure of a viral procapsid with molecular scaffolding. Nature 389:308-313. http://dx.doi.org/10.1038/38537.
13. Cherwa JE, Jr, Organtini LJ, Ashley RE, Hafenstein SL, Fane BA. 2011. In vitro assembly of the oX174 procapsid from external scaffolding protein oligomers and early pentameric assembly intermediates. J. Mol. Biol. 412:387-396. http://dx.doi.org/10.1016/j.jmb.2011.07.070.
14. Cherwa JE, Jr, Young LN, Fane BA. 2011. Uncoupling the functions of a multifunctional protein: the isolation of a DNA pilot protein mutant that affects particle morphogenesis. Virology 411:9-14. http://dx.doi.org/10 .1016/j.virol.2010.12.026.
15. Gordon EB, Fane BA. 2013. The effects of an early conformational switch defect during ΦX174 morphogenesis are belatedly manifested late in the assembly pathway. J. Virol. 87:2518-2525. http://dx.doi.org/10.1128/JVI .02839-12.
16. Evilevitch A. 2013. Physical evolution of pressure-driven viral infection. Biophys. J. 104:2113-2114. http://dx.doi.org/10.1016/j.bpj.2013.03.062.
17. Peralta B, Gil-Carton D, Castano-Diez D, Bertin A, Boulogne C, Oksanen HM, Bamford DH, Abrescia NG. 2013. Mechanism of membranous tunnelling nanotube formation in viral genome delivery. PLoS Biol. 11(9):e1001667. http://dx.doi.org/10.1371/journal.pbio.1001667.
18. Luscombe NM, Laskowski RA, Thornton JM. 2001. Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level. Nucleic Acids Res. 29:2860-2874. http://dx.doi.org/10 .1093/nar/29.13.2860.
19. Mano Y, Sakai H, Komano T. 1979. Growth and DNA synthesis of bacteriophage phi x174 in a dnaP mutant of Escherichia coli. J. Virol. 30: 650-656.
20. Benevides JM, Stow PL, Ilag LL, Incardona NL, Thomas GJ, Jr. 1991. Differences in secondary structure between packaged and unpackaged single-stranded DNA of bacteriophage phi X174 determined by Raman spectroscopy: a model for phi X174 DNA packaging. Biochemistry 30: 4855-4863. http://dx.doi.org/10.1021/bi00234a004.